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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 82 |
| AccII | CGCG | 2 cut(s) | 145, 287 |
| AciI | CCGC | 6 cut(s) | 8, 143, 183, 203, 285, 287 |
| AclWI | GGATC | 1 cut(s) | 500 |
| AcoI | YGGCCR | 1 cut(s) | 459 |
| AcuI | CTGAAG | 2 cut(s) | 114, 538 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 88, 132, 212 |
| AflII | CTTAAG | 2 cut(s) | 332, 449 |
| AgsI | TTSAA | 1 cut(s) | 484 |
| AjnI | CCWGG | 1 cut(s) | 185 |
| AluBI | AGCT | 2 cut(s) | 158, 424 |
| AluI | AGCT | 2 cut(s) | 158, 424 |
| Alw26I | GTCTC | 1 cut(s) | 43 |
| AlwI | GGATC | 1 cut(s) | 500 |
| AoxI | GGCC | 1 cut(s) | 459 |
| ApeKI | GCWGC | 3 cut(s) | 346, 424, 603 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 233, 263, 265, 295 |
| AspA2I | CCTAGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 487, 538 |
| AvrII | CCTAGG | 1 cut(s) | 131 |
| AxyI | CCTNAGG | 1 cut(s) | 511 |
| BalI | TGGCCA | 1 cut(s) | 461 |
| BbsI | GAAGAC | 1 cut(s) | 233 |
| BbvI | GCAGC | 3 cut(s) | 358, 411, 590 |
| BccI | CCATC | 3 cut(s) | 482, 506, 557 |
| BciT130I | CCWGG | 1 cut(s) | 187 |
| BclI | TGATCA | 1 cut(s) | 403 |
| BcoDI | GTCTC | 1 cut(s) | 43 |
| BfaI | CTAG | 1 cut(s) | 132 |
| BfrI | CTTAAG | 2 cut(s) | 332, 449 |
| BfuAI | ACCTGC | 1 cut(s) | 82 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 119, 467 |
| BisI | GCNGC | 3 cut(s) | 347, 425, 604 |
| BlnI | CCTAGG | 1 cut(s) | 131 |
| BlsI | GCNGC | 3 cut(s) | 348, 426, 605 |
| Bme1390I | CCNGG | 1 cut(s) | 187 |
| BmrFI | CCNGG | 1 cut(s) | 187 |
| BmsI | GCATC | 2 cut(s) | 166, 333 |
| BpiI | GAAGAC | 1 cut(s) | 233 |
| BsaBI | GATNNNNATC | 2 cut(s) | 402, 497 |
| BsaJI | CCNNGG | 2 cut(s) | 131, 285 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 88, 132, 212 |
| Bse118I | RCCGGY | 1 cut(s) | 599 |
| Bse1I | ACTGG | 2 cut(s) | 255, 319 |
| Bse21I | CCTNAGG | 1 cut(s) | 511 |
| Bse8I | GATNNNNATC | 2 cut(s) | 402, 497 |
| BseBI | CCWGG | 1 cut(s) | 187 |
| BseDI | CCNNGG | 2 cut(s) | 131, 285 |
| BseGI | GGATG | 6 cut(s) | 181, 281, 348, 493, 498, 568 |
| BseJI | GATNNNNATC | 2 cut(s) | 402, 497 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 88, 132, 212 |
| BseMII | CTCAG | 1 cut(s) | 176 |
| BseNI | ACTGG | 2 cut(s) | 255, 319 |
| BseRI | GAGGAG | 1 cut(s) | 382 |
| BseXI | GCAGC | 3 cut(s) | 358, 411, 590 |
| BsgI | GTGCAG | 1 cut(s) | 32 |
| Bsh1236I | CGCG | 2 cut(s) | 145, 287 |
| BshFI | GGCC | 1 cut(s) | 461 |
| BsiSI | CCGG | 1 cut(s) | 600 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 88, 132, 212 |
| BsmAI | GTCTC | 1 cut(s) | 43 |
| BsnI | GGCC | 1 cut(s) | 461 |
| Bsp143I | GATC | 2 cut(s) | 403, 492 |
| BspACI | CCGC | 6 cut(s) | 8, 143, 183, 203, 285, 287 |
| BspANI | GGCC | 1 cut(s) | 461 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspFNI | CGCG | 2 cut(s) | 145, 287 |
| BspHI | TCATGA | 1 cut(s) | 406 |
| BspMI | ACCTGC | 1 cut(s) | 82 |
| BspPI | GGATC | 1 cut(s) | 500 |
| BspTI | CTTAAG | 2 cut(s) | 332, 449 |
| BsrFI | RCCGGY | 1 cut(s) | 599 |
| BsrI | ACTGG | 2 cut(s) | 255, 319 |
| BssAI | RCCGGY | 1 cut(s) | 599 |
| BssECI | CCNNGG | 2 cut(s) | 131, 285 |
| BssMI | GATC | 2 cut(s) | 403, 492 |
| BssT1I | CCWWGG | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 1 cut(s) | 187 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 232 |
| BstAFI | CTTAAG | 2 cut(s) | 332, 449 |
| BstDEI | CTNAG | 2 cut(s) | 162, 511 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstEII | GGTNACC | 1 cut(s) | 544 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 130, 210 |
| BstF5I | GGATG | 6 cut(s) | 181, 281, 348, 493, 498, 568 |
| BstFNI | CGCG | 2 cut(s) | 145, 287 |
| BstKTI | GATC | 2 cut(s) | 406, 495 |
| BstMAI | GTCTC | 1 cut(s) | 43 |
| BstMBI | GATC | 2 cut(s) | 403, 492 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 119, 343, 352, 467 |
| BstNI | CCWGG | 1 cut(s) | 187 |
| BstPI | GGTNACC | 1 cut(s) | 544 |
| BstSCI | CCNGG | 1 cut(s) | 185 |
| BstUI | CGCG | 2 cut(s) | 145, 287 |
| BstV1I | GCAGC | 3 cut(s) | 358, 411, 590 |
| BstV2I | GAAGAC | 1 cut(s) | 233 |
| Bsu36I | CCTNAGG | 1 cut(s) | 511 |
| BsuRI | GGCC | 1 cut(s) | 461 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtsCI | GGATG | 6 cut(s) | 181, 281, 348, 493, 498, 568 |
| BtsIMutI | CAGTG | 1 cut(s) | 312 |
| BveI | ACCTGC | 1 cut(s) | 82 |
| CciI | TCATGA | 1 cut(s) | 406 |
| Cfr10I | RCCGGY | 1 cut(s) | 599 |
| Cfr42I | CCGCGG | 1 cut(s) | 288 |
| CseI | GACGC | 1 cut(s) | 168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 417, 452 |
| CviAII | CATG | 4 cut(s) | 407, 465, 574, 583 |
| CviJI | RGCY | 8 cut(s) | 92, 113, 122, 158, 424, 461, 470, 603 |
| CviKI_1 | RGCY | 8 cut(s) | 92, 113, 122, 158, 424, 461, 470, 603 |
| DdeI | CTNAG | 2 cut(s) | 162, 511 |
| DpnI | GATC | 2 cut(s) | 405, 494 |
| DpnII | GATC | 2 cut(s) | 403, 492 |
| DraI | TTTAAA | 1 cut(s) | 640 |
| EaeI | YGGCCR | 1 cut(s) | 459 |
| EciI | GGCGGA | 1 cut(s) | 172 |
| Eco130I | CCWWGG | 1 cut(s) | 131 |
| Eco32I | GATATC | 1 cut(s) | 533 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 538 |
| Eco81I | CCTNAGG | 1 cut(s) | 511 |
| Eco91I | GGTNACC | 1 cut(s) | 544 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 130, 210 |
| EcoO65I | GGTNACC | 1 cut(s) | 544 |
| EcoRII | CCWGG | 1 cut(s) | 185 |
| EcoRV | GATATC | 1 cut(s) | 533 |
| EcoT14I | CCWWGG | 1 cut(s) | 131 |
| EcoT22I | ATGCAT | 1 cut(s) | 636 |
| ErhI | CCWWGG | 1 cut(s) | 131 |
| FaeI | CATG | 4 cut(s) | 410, 468, 577, 586 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 110, 142 |
| FatI | CATG | 4 cut(s) | 406, 464, 573, 582 |
| FbaI | TGATCA | 1 cut(s) | 403 |
| Fnu4HI | GCNGC | 3 cut(s) | 347, 425, 604 |
| FokI | GGATG | 6 cut(s) | 188, 268, 355, 485, 500, 575 |
| Fsp4HI | GCNGC | 3 cut(s) | 347, 425, 604 |
| FspBI | CTAG | 1 cut(s) | 132 |
| GluI | GCNGC | 3 cut(s) | 347, 425, 604 |
| HaeIII | GGCC | 1 cut(s) | 461 |
| HapII | CCGG | 1 cut(s) | 600 |
| HgaI | GACGC | 1 cut(s) | 168 |
| Hin1II | CATG | 4 cut(s) | 410, 468, 577, 586 |
| HinfI | GANTC | 2 cut(s) | 218, 290 |
| HpaII | CCGG | 1 cut(s) | 600 |
| HphI | GGTGA | 2 cut(s) | 487, 538 |
| Hpy166II | GTNNAC | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 295, 557 |
| Hpy188III | TCNNGA | 1 cut(s) | 407 |
| Hpy8I | GTNNAC | 1 cut(s) | 71 |
| Hpy99I | CGWCG | 2 cut(s) | 253, 342 |
| HpyAV | CCTTC | 6 cut(s) | 82, 136, 373, 478, 552, 580 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 232 |
| HpyCH4IV | ACGT | 2 cut(s) | 22, 455 |
| HpyCH4V | TGCA | 5 cut(s) | 13, 269, 346, 606, 634 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 119, 343, 352, 467 |
| HpyF3I | CTNAG | 2 cut(s) | 162, 511 |
| HpySE526I | ACGT | 2 cut(s) | 22, 455 |
| Hsp92II | CATG | 4 cut(s) | 410, 468, 577, 586 |
| Ksp22I | TGATCA | 1 cut(s) | 403 |
| KspI | CCGCGG | 1 cut(s) | 288 |
| Kzo9I | GATC | 2 cut(s) | 403, 492 |
| LpnPI | CCDG | 8 cut(s) | 87, 172, 181, 198, 199, 268, 300, 613 |
| Lsp1109I | GCAGC | 3 cut(s) | 358, 411, 590 |
| LweI | GCATC | 2 cut(s) | 166, 333 |
| MaeI | CTAG | 1 cut(s) | 132 |
| MaeII | ACGT | 2 cut(s) | 22, 455 |
| MaeIII | GTNAC | 1 cut(s) | 544 |
| MalI | GATC | 2 cut(s) | 405, 494 |
| MboI | GATC | 2 cut(s) | 403, 492 |
| MboII | GAAGA | 2 cut(s) | 238, 544 |
| MlsI | TGGCCA | 1 cut(s) | 461 |
| MluCI | AATT | 3 cut(s) | 360, 433, 521 |
| MluNI | TGGCCA | 1 cut(s) | 461 |
| MnlI | CCTC | 7 cut(s) | 360, 363, 388, 450, 511, 583, 615 |
| Mox20I | TGGCCA | 1 cut(s) | 461 |
| Mph1103I | ATGCAT | 1 cut(s) | 636 |
| MscI | TGGCCA | 1 cut(s) | 461 |
| MseI | TTAA | 3 cut(s) | 333, 450, 639 |
| MslI | CAYNNNNRTG | 1 cut(s) | 611 |
| Msp20I | TGGCCA | 1 cut(s) | 461 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MspCI | CTTAAG | 2 cut(s) | 332, 449 |
| MspI | CCGG | 1 cut(s) | 600 |
| MspR9I | CCNGG | 1 cut(s) | 187 |
| MvaI | CCWGG | 1 cut(s) | 187 |
| MvnI | CGCG | 2 cut(s) | 145, 287 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 119, 343, 352, 467 |
| NdeII | GATC | 2 cut(s) | 403, 492 |
| NlaIII | CATG | 4 cut(s) | 410, 468, 577, 586 |
| NmuCI | GTSAC | 1 cut(s) | 544 |
| NsiI | ATGCAT | 1 cut(s) | 636 |
| PagI | TCATGA | 1 cut(s) | 406 |
| PfeI | GAWTC | 2 cut(s) | 218, 290 |
| PkrI | GCNGC | 3 cut(s) | 348, 426, 605 |
| Psp6I | CCWGG | 1 cut(s) | 185 |
| PspEI | GGTNACC | 1 cut(s) | 544 |
| PspGI | CCWGG | 1 cut(s) | 185 |
| RseI | CAYNNNNRTG | 1 cut(s) | 611 |
| SacII | CCGCGG | 1 cut(s) | 288 |
| SaqAI | TTAA | 3 cut(s) | 333, 450, 639 |
| SatI | GCNGC | 3 cut(s) | 347, 425, 604 |
| Sau3AI | GATC | 2 cut(s) | 403, 492 |
| ScrFI | CCNGG | 1 cut(s) | 187 |
| SfaNI | GCATC | 2 cut(s) | 166, 333 |
| Sfr303I | CCGCGG | 1 cut(s) | 288 |
| SgrBI | CCGCGG | 1 cut(s) | 288 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 611 |
| SmlI | CTYRAG | 2 cut(s) | 332, 449 |
| SmoI | CTYRAG | 2 cut(s) | 332, 449 |
| Sse9I | AATT | 3 cut(s) | 360, 433, 521 |
| SsiI | CCGC | 6 cut(s) | 8, 143, 183, 203, 285, 287 |
| SspMI | CTAG | 1 cut(s) | 132 |
| StyD4I | CCNGG | 1 cut(s) | 185 |
| StyI | CCWWGG | 1 cut(s) | 131 |
| TaaI | ACNGT | 2 cut(s) | 37, 232 |
| TaiI | ACGT | 2 cut(s) | 25, 458 |
| TasI | AATT | 3 cut(s) | 360, 433, 521 |
| TfiI | GAWTC | 2 cut(s) | 218, 290 |
| Tru1I | TTAA | 3 cut(s) | 333, 450, 639 |
| Tru9I | TTAA | 3 cut(s) | 333, 450, 639 |
| TscAI | CASTG | 1 cut(s) | 319 |
| TseFI | GTSAC | 1 cut(s) | 544 |
| TseI | GCWGC | 3 cut(s) | 346, 424, 603 |
| Tsp45I | GTSAC | 1 cut(s) | 544 |
| TspDTI | ATGAA | 3 cut(s) | 17, 32, 599 |
| TspGWI | ACGGA | 1 cut(s) | 355 |
| TspRI | CASTG | 1 cut(s) | 319 |
| Vha464I | CTTAAG | 2 cut(s) | 332, 449 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 130, 210 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XmaJI | CCTAGG | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 132 |
| Zsp2I | ATGCAT | 1 cut(s) | 636 |