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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 313 |
| AclWI | GGATC | 3 cut(s) | 20, 179, 192 |
| AcuI | CTGAAG | 1 cut(s) | 186 |
| AfaI | GTAC | 2 cut(s) | 43, 146 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AgsI | TTSAA | 1 cut(s) | 290 |
| AleI | CACNNNNGTG | 1 cut(s) | 49 |
| Alw21I | GWGCWC | 1 cut(s) | 177 |
| Alw44I | GTGCAC | 1 cut(s) | 173 |
| AlwI | GGATC | 3 cut(s) | 20, 179, 192 |
| Ama87I | CYCGRG | 1 cut(s) | 139 |
| Aor13HI | TCCGGA | 1 cut(s) | 313 |
| ApaLI | GTGCAC | 1 cut(s) | 173 |
| AvaI | CYCGRG | 1 cut(s) | 139 |
| BaeGI | GKGCMC | 1 cut(s) | 177 |
| BamHI | GGATCC | 1 cut(s) | 184 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| Bbv12I | GWGCWC | 1 cut(s) | 177 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfmI | CTRYAG | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 1 cut(s) | 139 |
| BmiI | GGNNCC | 2 cut(s) | 129, 186 |
| BmrI | ACTGGG | 1 cut(s) | 219 |
| BmsI | GCATC | 1 cut(s) | 170 |
| BmuI | ACTGGG | 1 cut(s) | 219 |
| BsaAI | YACGTR | 1 cut(s) | 148 |
| BsaBI | GATNNNNATC | 1 cut(s) | 30 |
| BsaWI | WCCGGW | 1 cut(s) | 313 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| Bse1I | ACTGG | 2 cut(s) | 43, 214 |
| Bse8I | GATNNNNATC | 1 cut(s) | 30 |
| BseAI | TCCGGA | 1 cut(s) | 313 |
| BseJI | GATNNNNATC | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseNI | ACTGG | 2 cut(s) | 43, 214 |
| BseSI | GKGCMC | 1 cut(s) | 177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 177 |
| BsiHKCI | CYCGRG | 1 cut(s) | 139 |
| BsiSI | CCGG | 1 cut(s) | 314 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsoBI | CYCGRG | 1 cut(s) | 139 |
| Bsp1286I | GDGCHC | 2 cut(s) | 76, 177 |
| Bsp13I | TCCGGA | 1 cut(s) | 313 |
| Bsp143I | GATC | 4 cut(s) | 25, 31, 88, 184 |
| BspEI | TCCGGA | 1 cut(s) | 313 |
| BspLI | GGNNCC | 2 cut(s) | 129, 186 |
| BspPI | GGATC | 3 cut(s) | 20, 179, 192 |
| BsrI | ACTGG | 2 cut(s) | 43, 214 |
| BssMI | GATC | 4 cut(s) | 25, 31, 88, 184 |
| BstBAI | YACGTR | 1 cut(s) | 148 |
| BstKTI | GATC | 4 cut(s) | 28, 34, 91, 187 |
| BstMBI | GATC | 4 cut(s) | 25, 31, 88, 184 |
| BstSFI | CTRYAG | 1 cut(s) | 94 |
| BstSLI | GKGCMC | 1 cut(s) | 177 |
| BstSNI | TACGTA | 1 cut(s) | 148 |
| BstX2I | RGATCY | 2 cut(s) | 25, 184 |
| BstYI | RGATCY | 2 cut(s) | 25, 184 |
| BtsIMutI | CAGTG | 1 cut(s) | 63 |
| Csp6I | GTAC | 2 cut(s) | 42, 145 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 319, 354 |
| CviAII | CATG | 2 cut(s) | 181, 361 |
| CviJI | RGCY | 1 cut(s) | 74 |
| CviKI_1 | RGCY | 1 cut(s) | 74 |
| CviQI | GTAC | 2 cut(s) | 42, 145 |
| DpnI | GATC | 4 cut(s) | 27, 33, 90, 186 |
| DpnII | GATC | 4 cut(s) | 25, 31, 88, 184 |
| Eco105I | TACGTA | 1 cut(s) | 148 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 186 |
| Eco88I | CYCGRG | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| FaeI | CATG | 2 cut(s) | 184, 364 |
| FaiI | YATR | 7 cut(s) | 11, 96, 135, 182, 252, 353, 362 |
| FatI | CATG | 2 cut(s) | 180, 360 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| HapII | CCGG | 1 cut(s) | 314 |
| Hin1II | CATG | 2 cut(s) | 184, 364 |
| HincII | GTYRAC | 1 cut(s) | 232 |
| HindII | GTYRAC | 1 cut(s) | 232 |
| HinfI | GANTC | 3 cut(s) | 201, 265, 298 |
| HpaII | CCGG | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 3 cut(s) | 44, 175, 232 |
| Hpy188I | TCNGA | 4 cut(s) | 36, 88, 166, 270 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 314 |
| Hpy8I | GTNNAC | 3 cut(s) | 44, 175, 232 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 1 cut(s) | 175 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 184, 364 |
| Kpn2I | TCCGGA | 1 cut(s) | 313 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 4 cut(s) | 25, 31, 88, 184 |
| LmnI | GCTCC | 1 cut(s) | 316 |
| LpnPI | CCDG | 5 cut(s) | 24, 42, 195, 291, 327 |
| LweI | GCATC | 1 cut(s) | 170 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 1 cut(s) | 356 |
| MalI | GATC | 4 cut(s) | 27, 33, 90, 186 |
| MboI | GATC | 4 cut(s) | 25, 31, 88, 184 |
| MboII | GAAGA | 1 cut(s) | 307 |
| MflI | RGATCY | 2 cut(s) | 25, 184 |
| MhlI | GDGCHC | 2 cut(s) | 76, 177 |
| MluCI | AATT | 3 cut(s) | 153, 285, 369 |
| MlyI | GAGTC | 1 cut(s) | 195 |
| MnlI | CCTC | 2 cut(s) | 99, 370 |
| MroI | TCCGGA | 1 cut(s) | 313 |
| MseI | TTAA | 4 cut(s) | 156, 192, 243, 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 49 |
| MspI | CCGG | 1 cut(s) | 314 |
| NdeII | GATC | 4 cut(s) | 25, 31, 88, 184 |
| NlaIII | CATG | 2 cut(s) | 184, 364 |
| NlaIV | GGNNCC | 2 cut(s) | 129, 186 |
| OliI | CACNNNNGTG | 1 cut(s) | 49 |
| PfeI | GAWTC | 2 cut(s) | 265, 298 |
| PleI | GAGTC | 1 cut(s) | 195 |
| PpsI | GAGTC | 1 cut(s) | 195 |
| Ppu21I | YACGTR | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 2 cut(s) | 129, 186 |
| PsuI | RGATCY | 2 cut(s) | 25, 184 |
| RsaI | GTAC | 2 cut(s) | 43, 146 |
| RsaNI | GTAC | 2 cut(s) | 42, 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 49 |
| SaqAI | TTAA | 4 cut(s) | 156, 192, 243, 402 |
| Sau3AI | GATC | 4 cut(s) | 25, 31, 88, 184 |
| SchI | GAGTC | 1 cut(s) | 195 |
| SduI | GDGCHC | 2 cut(s) | 76, 177 |
| SetI | ASST | 2 cut(s) | 110, 150 |
| SfaNI | GCATC | 1 cut(s) | 170 |
| SfcI | CTRYAG | 1 cut(s) | 94 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 49 |
| SnaBI | TACGTA | 1 cut(s) | 148 |
| Sse9I | AATT | 3 cut(s) | 153, 285, 369 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 1 cut(s) | 204 |
| TaqII | GACCGA | 1 cut(s) | 66 |
| TasI | AATT | 3 cut(s) | 153, 285, 369 |
| TfiI | GAWTC | 2 cut(s) | 265, 298 |
| Tru1I | TTAA | 4 cut(s) | 156, 192, 243, 402 |
| Tru9I | TTAA | 4 cut(s) | 156, 192, 243, 402 |
| TscAI | CASTG | 1 cut(s) | 70 |
| TspDTI | ATGAA | 3 cut(s) | 169, 337, 377 |
| TspRI | CASTG | 1 cut(s) | 70 |
| VneI | GTGCAC | 1 cut(s) | 173 |