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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 29, 41 |
| AciI | CCGC | 4 cut(s) | 29, 32, 41, 139 |
| AclWI | GGATC | 1 cut(s) | 195 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AgsI | TTSAA | 2 cut(s) | 79, 186 |
| AlwI | GGATC | 1 cut(s) | 195 |
| ApeKI | GCWGC | 1 cut(s) | 193 |
| AspA2I | CCTAGG | 1 cut(s) | 172 |
| AspLEI | GCGC | 1 cut(s) | 29 |
| AsuHPI | GGTGA | 1 cut(s) | 68 |
| AvrII | CCTAGG | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 205 |
| BfaI | CTAG | 1 cut(s) | 173 |
| BisI | GCNGC | 2 cut(s) | 30, 194 |
| BlnI | CCTAGG | 1 cut(s) | 172 |
| BlsI | GCNGC | 2 cut(s) | 31, 195 |
| BsaJI | CCNNGG | 2 cut(s) | 16, 172 |
| BseDI | CCNNGG | 2 cut(s) | 16, 172 |
| BseGI | GGATG | 2 cut(s) | 52, 232 |
| BseRI | GAGGAG | 1 cut(s) | 33 |
| BseXI | GCAGC | 1 cut(s) | 205 |
| Bsh1236I | CGCG | 2 cut(s) | 29, 41 |
| BsiSI | CCGG | 1 cut(s) | 98 |
| BslFI | GGGAC | 1 cut(s) | 20 |
| BsmFI | GGGAC | 1 cut(s) | 20 |
| Bsp143I | GATC | 2 cut(s) | 72, 200 |
| BspACI | CCGC | 4 cut(s) | 29, 32, 41, 139 |
| BspFNI | CGCG | 2 cut(s) | 29, 41 |
| BspPI | GGATC | 1 cut(s) | 195 |
| BssECI | CCNNGG | 2 cut(s) | 16, 172 |
| BssMI | GATC | 2 cut(s) | 72, 200 |
| BssT1I | CCWWGG | 1 cut(s) | 172 |
| Bst4CI | ACNGT | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 1 cut(s) | 255 |
| BstF5I | GGATG | 2 cut(s) | 52, 232 |
| BstFNI | CGCG | 2 cut(s) | 29, 41 |
| BstHHI | GCGC | 1 cut(s) | 29 |
| BstKTI | GATC | 2 cut(s) | 75, 203 |
| BstMBI | GATC | 2 cut(s) | 72, 200 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 33, 38 |
| BstUI | CGCG | 2 cut(s) | 29, 41 |
| BstV1I | GCAGC | 1 cut(s) | 205 |
| BtsCI | GGATG | 2 cut(s) | 52, 232 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 29 |
| CseI | GACGC | 1 cut(s) | 47 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviAII | CATG | 2 cut(s) | 136, 145 |
| CviJI | RGCY | 1 cut(s) | 254 |
| CviKI_1 | RGCY | 1 cut(s) | 254 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DdeI | CTNAG | 1 cut(s) | 255 |
| DpnI | GATC | 2 cut(s) | 74, 202 |
| DpnII | GATC | 2 cut(s) | 72, 200 |
| Eco130I | CCWWGG | 1 cut(s) | 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 172 |
| FaeI | CATG | 2 cut(s) | 139, 148 |
| FaiI | YATR | 6 cut(s) | 113, 128, 137, 146, 276, 283 |
| FaqI | GGGAC | 1 cut(s) | 20 |
| FatI | CATG | 2 cut(s) | 135, 144 |
| FauI | CCCGC | 1 cut(s) | 25 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 194 |
| FokI | GGATG | 2 cut(s) | 59, 239 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 194 |
| FspBI | CTAG | 1 cut(s) | 173 |
| GlaI | GCGC | 1 cut(s) | 28 |
| GluI | GCNGC | 2 cut(s) | 30, 194 |
| HapII | CCGG | 1 cut(s) | 98 |
| HgaI | GACGC | 1 cut(s) | 47 |
| HhaI | GCGC | 1 cut(s) | 29 |
| Hin1II | CATG | 2 cut(s) | 139, 148 |
| Hin6I | GCGC | 1 cut(s) | 27 |
| HinP1I | GCGC | 1 cut(s) | 27 |
| HinfI | GANTC | 1 cut(s) | 12 |
| HpaII | CCGG | 1 cut(s) | 98 |
| HphI | GGTGA | 1 cut(s) | 68 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 53, 205, 247 |
| Hpy99I | CGWCG | 2 cut(s) | 41, 201 |
| HpyAV | CCTTC | 2 cut(s) | 109, 142 |
| HpyCH4III | ACNGT | 1 cut(s) | 122 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 33, 38 |
| HpyF3I | CTNAG | 1 cut(s) | 255 |
| Hsp92II | CATG | 2 cut(s) | 139, 148 |
| HspAI | GCGC | 1 cut(s) | 27 |
| Kzo9I | GATC | 2 cut(s) | 72, 200 |
| LpnPI | CCDG | 1 cut(s) | 111 |
| Lsp1109I | GCAGC | 1 cut(s) | 205 |
| MaeI | CTAG | 1 cut(s) | 173 |
| MalI | GATC | 2 cut(s) | 74, 202 |
| MboI | GATC | 2 cut(s) | 72, 200 |
| MboII | GAAGA | 1 cut(s) | 67 |
| MluCI | AATT | 2 cut(s) | 156, 206 |
| MlyI | GAGTC | 1 cut(s) | 6 |
| MnlI | CCTC | 4 cut(s) | 11, 47, 154, 234 |
| MspI | CCGG | 1 cut(s) | 98 |
| MvnI | CGCG | 2 cut(s) | 29, 41 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 33, 38 |
| NdeII | GATC | 2 cut(s) | 72, 200 |
| NlaIII | CATG | 2 cut(s) | 139, 148 |
| PkrI | GCNGC | 2 cut(s) | 31, 195 |
| PleI | GAGTC | 1 cut(s) | 6 |
| PpsI | GAGTC | 1 cut(s) | 6 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| SatI | GCNGC | 2 cut(s) | 30, 194 |
| Sau3AI | GATC | 2 cut(s) | 72, 200 |
| SchI | GAGTC | 1 cut(s) | 6 |
| SetI | ASST | 5 cut(s) | 58, 68, 174, 178, 245 |
| Sse9I | AATT | 2 cut(s) | 156, 206 |
| SsiI | CCGC | 4 cut(s) | 29, 32, 41, 139 |
| SspMI | CTAG | 1 cut(s) | 173 |
| StyI | CCWWGG | 1 cut(s) | 172 |
| TaaI | ACNGT | 1 cut(s) | 122 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TasI | AATT | 2 cut(s) | 156, 206 |
| TauI | GCSGC | 1 cut(s) | 32 |
| TseI | GCWGC | 1 cut(s) | 193 |
| TspDTI | ATGAA | 4 cut(s) | 121, 128, 161, 281 |
| TspGWI | ACGGA | 1 cut(s) | 24 |
| XmaJI | CCTAGG | 1 cut(s) | 172 |
| XspI | CTAG | 1 cut(s) | 173 |