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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 147, 861 |
| AcsI | RAATTY | 3 cut(s) | 568, 677, 736 |
| AcuI | CTGAAG | 3 cut(s) | 94, 506, 758 |
| AcyI | GRCGYC | 1 cut(s) | 335 |
| AdeI | CACNNNGTG | 1 cut(s) | 135 |
| AfaI | GTAC | 1 cut(s) | 53 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 378, 379 |
| AflII | CTTAAG | 1 cut(s) | 374 |
| AflIII | ACRYGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 2 cut(s) | 313, 832 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 2 cut(s) | 165, 556 |
| AluI | AGCT | 2 cut(s) | 165, 556 |
| Alw21I | GWGCWC | 1 cut(s) | 766 |
| Alw26I | GTCTC | 1 cut(s) | 310 |
| Alw44I | GTGCAC | 1 cut(s) | 762 |
| AoxI | GGCC | 1 cut(s) | 714 |
| ApaLI | GTGCAC | 1 cut(s) | 762 |
| ApeKI | GCWGC | 4 cut(s) | 401, 497, 574, 617 |
| ApoI | RAATTY | 3 cut(s) | 568, 677, 736 |
| AspLEI | GCGC | 1 cut(s) | 155 |
| AspS9I | GGNCC | 1 cut(s) | 219 |
| AsuHPI | GGTGA | 4 cut(s) | 379, 458, 579, 757 |
| AvaII | GGWCC | 1 cut(s) | 219 |
| BaeGI | GKGCMC | 2 cut(s) | 414, 766 |
| BanII | GRGCYC | 1 cut(s) | 636 |
| BbsI | GAAGAC | 1 cut(s) | 172 |
| Bbv12I | GWGCWC | 1 cut(s) | 766 |
| BbvI | GCAGC | 4 cut(s) | 388, 484, 561, 604 |
| BccI | CCATC | 1 cut(s) | 182 |
| BceAI | ACGGC | 1 cut(s) | 322 |
| BciVI | GTATCC | 1 cut(s) | 539 |
| BcoDI | GTCTC | 1 cut(s) | 310 |
| BfaI | CTAG | 2 cut(s) | 438, 602 |
| BfrI | CTTAAG | 1 cut(s) | 374 |
| BfuI | GTATCC | 1 cut(s) | 539 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 722 |
| BisI | GCNGC | 4 cut(s) | 402, 498, 575, 618 |
| BlsI | GCNGC | 4 cut(s) | 403, 499, 576, 619 |
| Bme18I | GGWCC | 1 cut(s) | 219 |
| BmgT120I | GGNCC | 1 cut(s) | 219 |
| BmiI | GGNNCC | 2 cut(s) | 221, 633 |
| BmrI | ACTGGG | 1 cut(s) | 217 |
| BmuI | ACTGGG | 1 cut(s) | 217 |
| BpiI | GAAGAC | 1 cut(s) | 172 |
| BpmI | CTGGAG | 1 cut(s) | 444 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| BsaHI | GRCGYC | 1 cut(s) | 335 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 378, 379 |
| Bse1I | ACTGG | 2 cut(s) | 223, 427 |
| Bse3DI | GCAATG | 1 cut(s) | 793 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 378, 379 |
| BseMI | GCAATG | 1 cut(s) | 793 |
| BseMII | CTCAG | 2 cut(s) | 175, 304 |
| BseNI | ACTGG | 2 cut(s) | 223, 427 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BseSI | GKGCMC | 2 cut(s) | 414, 766 |
| BseXI | GCAGC | 4 cut(s) | 388, 484, 561, 604 |
| BsgI | GTGCAG | 1 cut(s) | 603 |
| BshFI | GGCC | 1 cut(s) | 716 |
| BsiHKAI | GWGCWC | 1 cut(s) | 766 |
| BslFI | GGGAC | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 378, 379 |
| BsmAI | GTCTC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 1 cut(s) | 205 |
| BsnI | GGCC | 1 cut(s) | 716 |
| Bsp1286I | GDGCHC | 3 cut(s) | 414, 636, 766 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| BspACI | CCGC | 2 cut(s) | 147, 861 |
| BspANI | GGCC | 1 cut(s) | 716 |
| BspCNI | CTCAG | 2 cut(s) | 174, 303 |
| BspLI | GGNNCC | 2 cut(s) | 221, 633 |
| BspTI | CTTAAG | 1 cut(s) | 374 |
| BsrDI | GCAATG | 1 cut(s) | 793 |
| BsrI | ACTGG | 2 cut(s) | 223, 427 |
| BssMI | GATC | 1 cut(s) | 234 |
| BssNI | GRCGYC | 1 cut(s) | 335 |
| Bst4CI | ACNGT | 2 cut(s) | 847, 877 |
| BstACI | GRCGYC | 1 cut(s) | 335 |
| BstAFI | CTTAAG | 1 cut(s) | 374 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 497, 797 |
| BstC8I | GCNNGC | 2 cut(s) | 151, 615 |
| BstDEI | CTNAG | 2 cut(s) | 161, 290 |
| BstEII | GGTNACC | 2 cut(s) | 367, 391 |
| BstHHI | GCGC | 1 cut(s) | 155 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 1 cut(s) | 310 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 326, 356, 497, 503, 722, 797 |
| BstNSI | RCATGY | 1 cut(s) | 145 |
| BstPI | GGTNACC | 2 cut(s) | 367, 391 |
| BstSLI | GKGCMC | 2 cut(s) | 414, 766 |
| BstV1I | GCAGC | 4 cut(s) | 388, 484, 561, 604 |
| BstV2I | GAAGAC | 1 cut(s) | 172 |
| BsuI | GTATCC | 1 cut(s) | 539 |
| BsuRI | GGCC | 1 cut(s) | 716 |
| BtsI | GCAGTG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 2 cut(s) | 345, 843 |
| Cac8I | GCNNGC | 2 cut(s) | 151, 615 |
| CfoI | GCGC | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 1 cut(s) | 219 |
| CseI | GACGC | 1 cut(s) | 343 |
| Csp6I | GTAC | 1 cut(s) | 52 |
| CviAII | CATG | 4 cut(s) | 142, 478, 682, 868 |
| CviQI | GTAC | 1 cut(s) | 52 |
| DdeI | CTNAG | 2 cut(s) | 161, 290 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| DraI | TTTAAA | 1 cut(s) | 511 |
| DraIII | CACNNNGTG | 1 cut(s) | 135 |
| EciI | GGCGGA | 1 cut(s) | 136 |
| Eco24I | GRGCYC | 1 cut(s) | 636 |
| Eco47I | GGWCC | 1 cut(s) | 219 |
| Eco57I | CTGAAG | 3 cut(s) | 94, 506, 758 |
| Eco91I | GGTNACC | 2 cut(s) | 367, 391 |
| EcoO65I | GGTNACC | 2 cut(s) | 367, 391 |
| EcoT38I | GRGCYC | 1 cut(s) | 636 |
| FaeI | CATG | 4 cut(s) | 145, 481, 685, 871 |
| FaqI | GGGAC | 1 cut(s) | 205 |
| FatI | CATG | 4 cut(s) | 141, 477, 681, 867 |
| Fnu4HI | GCNGC | 4 cut(s) | 402, 498, 575, 618 |
| FriOI | GRGCYC | 1 cut(s) | 636 |
| Fsp4HI | GCNGC | 4 cut(s) | 402, 498, 575, 618 |
| FspBI | CTAG | 2 cut(s) | 438, 602 |
| GlaI | GCGC | 1 cut(s) | 154 |
| GluI | GCNGC | 4 cut(s) | 402, 498, 575, 618 |
| GsuI | CTGGAG | 1 cut(s) | 444 |
| HaeIII | GGCC | 1 cut(s) | 716 |
| HgaI | GACGC | 1 cut(s) | 343 |
| HhaI | GCGC | 1 cut(s) | 155 |
| Hin1I | GRCGYC | 1 cut(s) | 335 |
| Hin1II | CATG | 4 cut(s) | 145, 481, 685, 871 |
| Hin6I | GCGC | 1 cut(s) | 153 |
| HinP1I | GCGC | 1 cut(s) | 153 |
| HinfI | GANTC | 1 cut(s) | 114 |
| HphI | GGTGA | 4 cut(s) | 379, 458, 579, 757 |
| Hpy166II | GTNNAC | 1 cut(s) | 764 |
| Hpy188I | TCNGA | 4 cut(s) | 113, 293, 544, 665 |
| Hpy188III | TCNNGA | 3 cut(s) | 187, 232, 832 |
| Hpy8I | GTNNAC | 1 cut(s) | 764 |
| Hpy99I | CGWCG | 1 cut(s) | 337 |
| HpyAV | CCTTC | 2 cut(s) | 660, 906 |
| HpyCH4III | ACNGT | 2 cut(s) | 847, 877 |
| HpyCH4IV | ACGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 7 cut(s) | 202, 483, 491, 500, 620, 764, 791 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 326, 356, 497, 503, 722, 797 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 290 |
| HpySE526I | ACGT | 1 cut(s) | 168 |
| Hsp92I | GRCGYC | 1 cut(s) | 335 |
| Hsp92II | CATG | 4 cut(s) | 145, 481, 685, 871 |
| HspAI | GCGC | 1 cut(s) | 153 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LmnI | GCTCC | 2 cut(s) | 631, 670 |
| LpnPI | CCDG | 9 cut(s) | 34, 163, 236, 302, 408, 509, 627, 761, 852 |
| Lsp1109I | GCAGC | 4 cut(s) | 388, 484, 561, 604 |
| MaeI | CTAG | 2 cut(s) | 438, 602 |
| MaeII | ACGT | 1 cut(s) | 168 |
| MalI | GATC | 1 cut(s) | 236 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 5 cut(s) | 115, 172, 512, 531, 815 |
| MfeI | CAATTG | 1 cut(s) | 591 |
| MhlI | GDGCHC | 3 cut(s) | 414, 636, 766 |
| MluCI | AATT | 7 cut(s) | 568, 591, 677, 703, 727, 736, 819 |
| MmeI | TCCRAC | 1 cut(s) | 123 |
| MseI | TTAA | 3 cut(s) | 375, 510, 702 |
| MslI | CAYNNNNRTG | 1 cut(s) | 759 |
| MspCI | CTTAAG | 1 cut(s) | 374 |
| MunI | CAATTG | 1 cut(s) | 591 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 326, 356, 497, 503, 722, 797 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 4 cut(s) | 145, 481, 685, 871 |
| NlaIV | GGNNCC | 2 cut(s) | 221, 633 |
| NmeAIII | GCCGAG | 1 cut(s) | 477 |
| NmuCI | GTSAC | 6 cut(s) | 367, 585, 649, 657, 745, 841 |
| NspI | RCATGY | 1 cut(s) | 145 |
| PciI | ACATGT | 1 cut(s) | 141 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 114 |
| PkrI | GCNGC | 4 cut(s) | 403, 499, 576, 619 |
| PscI | ACATGT | 1 cut(s) | 141 |
| PspEI | GGTNACC | 2 cut(s) | 367, 391 |
| PspN4I | GGNNCC | 2 cut(s) | 221, 633 |
| PspPI | GGNCC | 1 cut(s) | 219 |
| RsaI | GTAC | 1 cut(s) | 53 |
| RsaNI | GTAC | 1 cut(s) | 52 |
| RseI | CAYNNNNRTG | 1 cut(s) | 759 |
| SaqAI | TTAA | 3 cut(s) | 375, 510, 702 |
| SatI | GCNGC | 4 cut(s) | 402, 498, 575, 618 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 1 cut(s) | 219 |
| SduI | GDGCHC | 3 cut(s) | 414, 636, 766 |
| SetI | ASST | 9 cut(s) | 167, 171, 300, 398, 558, 651, 780, 799, 917 |
| SinI | GGWCC | 1 cut(s) | 219 |
| SmiI | ATTTAAAT | 1 cut(s) | 511 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 759 |
| SmlI | CTYRAG | 2 cut(s) | 185, 374 |
| SmoI | CTYRAG | 2 cut(s) | 185, 374 |
| Sse9I | AATT | 7 cut(s) | 568, 591, 677, 703, 727, 736, 819 |
| SsiI | CCGC | 2 cut(s) | 147, 861 |
| SspMI | CTAG | 2 cut(s) | 438, 602 |
| SwaI | ATTTAAAT | 1 cut(s) | 511 |
| TaaI | ACNGT | 2 cut(s) | 847, 877 |
| TaiI | ACGT | 1 cut(s) | 171 |
| TaqII | GACCGA | 1 cut(s) | 207 |
| TasI | AATT | 7 cut(s) | 568, 591, 677, 703, 727, 736, 819 |
| TfiI | GAWTC | 1 cut(s) | 114 |
| Tru1I | TTAA | 3 cut(s) | 375, 510, 702 |
| Tru9I | TTAA | 3 cut(s) | 375, 510, 702 |
| TscAI | CASTG | 2 cut(s) | 352, 850 |
| TseFI | GTSAC | 6 cut(s) | 367, 585, 649, 657, 745, 841 |
| TseI | GCWGC | 4 cut(s) | 401, 497, 574, 617 |
| Tsp45I | GTSAC | 6 cut(s) | 367, 585, 649, 657, 745, 841 |
| TspDTI | ATGAA | 3 cut(s) | 16, 581, 670 |
| TspRI | CASTG | 2 cut(s) | 352, 850 |
| Vha464I | CTTAAG | 1 cut(s) | 374 |
| VneI | GTGCAC | 1 cut(s) | 762 |
| VpaK11BI | GGWCC | 1 cut(s) | 219 |
| XapI | RAATTY | 3 cut(s) | 568, 677, 736 |
| XceI | RCATGY | 1 cut(s) | 145 |
| XspI | CTAG | 2 cut(s) | 438, 602 |