transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1701, 2637 |
| AarI | CACCTGC | 1 cut(s) | 1759 |
| Acc36I | ACCTGC | 2 cut(s) | 1362, 1759 |
| Acc65I | GGTACC | 1 cut(s) | 1511 |
| AccB1I | GGYRCC | 3 cut(s) | 76, 1511, 1747 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 86, 2027 |
| AccI | GTMKAC | 1 cut(s) | 2051 |
| AccIII | TCCGGA | 1 cut(s) | 2374 |
| AciI | CCGC | 3 cut(s) | 200, 203, 308 |
| AclWI | GGATC | 9 cut(s) | 42, 463, 829, 1765, 1901, 1919, 2338, 2433, 2617 |
| AcoI | YGGCCR | 2 cut(s) | 715, 1922 |
| AcsI | RAATTY | 2 cut(s) | 145, 549 |
| AcuI | CTGAAG | 2 cut(s) | 303, 437 |
| AcyI | GRCGYC | 1 cut(s) | 374 |
| AdeI | CACNNNGTG | 1 cut(s) | 2837 |
| AfaI | GTAC | 8 cut(s) | 697, 782, 892, 1137, 1513, 1789, 1977, 2151 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 86, 369, 370, 790, 1587, 2027, 2031, 2675 |
| AflII | CTTAAG | 1 cut(s) | 598 |
| AflIII | ACRYGT | 2 cut(s) | 1138, 2831 |
| AgeI | ACCGGT | 1 cut(s) | 835 |
| AhlI | ACTAGT | 1 cut(s) | 1354 |
| AjnI | CCWGG | 6 cut(s) | 473, 702, 712, 945, 1085, 1628 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2370, 2402 |
| Alw21I | GWGCWC | 2 cut(s) | 1415, 2486 |
| Alw26I | GTCTC | 4 cut(s) | 733, 1612, 1847, 2398 |
| AlwI | GGATC | 9 cut(s) | 42, 463, 829, 1765, 1901, 1919, 2338, 2433, 2617 |
| Ama87I | CYCGRG | 2 cut(s) | 178, 1507 |
| Aor13HI | TCCGGA | 1 cut(s) | 2374 |
| AoxI | GGCC | 4 cut(s) | 476, 715, 939, 1922 |
| ApoI | RAATTY | 2 cut(s) | 145, 549 |
| AsiGI | ACCGGT | 1 cut(s) | 835 |
| Asp718I | GGTACC | 1 cut(s) | 1511 |
| AspS9I | GGNCC | 3 cut(s) | 814, 940, 963 |
| AsuC2I | CCSGG | 2 cut(s) | 179, 180 |
| AvaI | CYCGRG | 2 cut(s) | 178, 1507 |
| AvaII | GGWCC | 2 cut(s) | 814, 963 |
| AxyI | CCTNAGG | 1 cut(s) | 785 |
| BalI | TGGCCA | 1 cut(s) | 1924 |
| BanI | GGYRCC | 3 cut(s) | 76, 1511, 1747 |
| BanII | GRGCYC | 1 cut(s) | 2486 |
| BbsI | GAAGAC | 2 cut(s) | 42, 528 |
| Bbv12I | GWGCWC | 2 cut(s) | 1415, 2486 |
| BceAI | ACGGC | 2 cut(s) | 702, 1057 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 140, 174, 569, 603 |
| BciT130I | CCWGG | 6 cut(s) | 475, 704, 714, 947, 1087, 1630 |
| BciVI | GTATCC | 1 cut(s) | 219 |
| BcnI | CCSGG | 2 cut(s) | 179, 180 |
| BcoDI | GTCTC | 4 cut(s) | 733, 1612, 1847, 2398 |
| BcuI | ACTAGT | 1 cut(s) | 1354 |
| BfaI | CTAG | 3 cut(s) | 699, 1355, 2750 |
| BfmI | CTRYAG | 4 cut(s) | 54, 678, 1820, 1897 |
| BfrI | CTTAAG | 1 cut(s) | 598 |
| BfuAI | ACCTGC | 2 cut(s) | 1362, 1759 |
| BfuI | GTATCC | 1 cut(s) | 219 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 947 |
| Bme1390I | CCNGG | 8 cut(s) | 179, 180, 475, 704, 714, 947, 1087, 1630 |
| Bme18I | GGWCC | 2 cut(s) | 814, 963 |
| BmeT110I | CYCGRG | 2 cut(s) | 178, 1507 |
| BmgT120I | GGNCC | 3 cut(s) | 814, 940, 963 |
| BmiI | GGNNCC | 6 cut(s) | 78, 570, 1513, 1579, 1749, 2235 |
| BmrFI | CCNGG | 8 cut(s) | 179, 180, 475, 704, 714, 947, 1087, 1630 |
| BmrI | ACTGGG | 2 cut(s) | 985, 1596 |
| BmuI | ACTGGG | 2 cut(s) | 985, 1596 |
| BpiI | GAAGAC | 2 cut(s) | 42, 528 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 211, 243, 1592, 1624, 1624, 1656 |
| BpmI | CTGGAG | 3 cut(s) | 42, 929, 2049 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2253 |
| BpuEI | CTTGAG | 6 cut(s) | 1280, 1829, 1831, 1900, 2726, 2828 |
| BpuMI | CCSGG | 2 cut(s) | 179, 180 |
| BsaAI | YACGTR | 2 cut(s) | 1139, 2834 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1924 |
| BsaHI | GRCGYC | 1 cut(s) | 374 |
| BsaI | GGTCTC | 1 cut(s) | 2398 |
| BsaJI | CCNNGG | 5 cut(s) | 178, 473, 703, 817, 1628 |
| BsaWI | WCCGGW | 2 cut(s) | 835, 2374 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 104, 134, 958, 988, 2022, 2052 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 86, 369, 370, 790, 1587, 2027, 2031, 2675 |
| Bse118I | RCCGGY | 1 cut(s) | 835 |
| Bse1I | ACTGG | 8 cut(s) | 10, 87, 991, 1426, 1591, 2032, 2126, 2141 |
| Bse21I | CCTNAGG | 1 cut(s) | 785 |
| Bse3DI | GCAATG | 3 cut(s) | 129, 269, 1067 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1924 |
| BseAI | TCCGGA | 1 cut(s) | 2374 |
| BseBI | CCWGG | 6 cut(s) | 475, 704, 714, 947, 1087, 1630 |
| BseDI | CCNNGG | 5 cut(s) | 178, 473, 703, 817, 1628 |
| BseJI | GATNNNNATC | 1 cut(s) | 1924 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 86, 369, 370, 790, 1587, 2027, 2031, 2675 |
| BseMI | GCAATG | 3 cut(s) | 129, 269, 1067 |
| BseMII | CTCAG | 9 cut(s) | 126, 776, 846, 1098, 1655, 1668, 2085, 2126, 2567 |
| BseNI | ACTGG | 8 cut(s) | 10, 87, 991, 1426, 1591, 2032, 2126, 2141 |
| BseRI | GAGGAG | 1 cut(s) | 2579 |
| BseYI | CCCAGC | 2 cut(s) | 59, 1280 |
| BsgI | GTGCAG | 2 cut(s) | 190, 1266 |
| BshFI | GGCC | 4 cut(s) | 478, 717, 941, 1924 |
| BshNI | GGYRCC | 3 cut(s) | 76, 1511, 1747 |
| BshTI | ACCGGT | 1 cut(s) | 835 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1415, 2486 |
| BsiHKCI | CYCGRG | 2 cut(s) | 178, 1507 |
| BsiSI | CCGG | 4 cut(s) | 179, 836, 2375, 2883 |
| BslFI | GGGAC | 2 cut(s) | 307, 2842 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 86, 369, 370, 790, 1587, 2027, 2031, 2675 |
| BsmAI | GTCTC | 4 cut(s) | 733, 1612, 1847, 2398 |
| BsmFI | GGGAC | 2 cut(s) | 307, 2842 |
| BsmI | GAATGC | 1 cut(s) | 1618 |
| BsnI | GGCC | 4 cut(s) | 478, 717, 941, 1924 |
| Bso31I | GGTCTC | 1 cut(s) | 2398 |
| BsoBI | CYCGRG | 2 cut(s) | 178, 1507 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1415, 2486 |
| Bsp13I | TCCGGA | 1 cut(s) | 2374 |
| BspACI | CCGC | 3 cut(s) | 200, 203, 308 |
| BspANI | GGCC | 4 cut(s) | 478, 717, 941, 1924 |
| BspCNI | CTCAG | 9 cut(s) | 127, 777, 847, 1099, 1654, 1669, 2086, 2125, 2566 |
| BspEI | TCCGGA | 1 cut(s) | 2374 |
| BspHI | TCATGA | 2 cut(s) | 397, 1318 |
| BspLI | GGNNCC | 6 cut(s) | 78, 570, 1513, 1579, 1749, 2235 |
| BspMAI | CTGCAG | 3 cut(s) | 58, 682, 1901 |
| BspMI | ACCTGC | 2 cut(s) | 1362, 1759 |
| BspPI | GGATC | 9 cut(s) | 42, 463, 829, 1765, 1901, 1919, 2338, 2433, 2617 |
| BspQI | GCTCTTC | 1 cut(s) | 2491 |
| BspT107I | GGYRCC | 3 cut(s) | 76, 1511, 1747 |
| BspTI | CTTAAG | 1 cut(s) | 598 |
| BspTNI | GGTCTC | 1 cut(s) | 2398 |
| BsrDI | GCAATG | 3 cut(s) | 129, 269, 1067 |
| BsrFI | RCCGGY | 1 cut(s) | 835 |
| BsrI | ACTGG | 8 cut(s) | 10, 87, 991, 1426, 1591, 2032, 2126, 2141 |
| BssAI | RCCGGY | 1 cut(s) | 835 |
| BssECI | CCNNGG | 5 cut(s) | 178, 473, 703, 817, 1628 |
| BssNI | GRCGYC | 1 cut(s) | 374 |
| Bst2UI | CCWGG | 6 cut(s) | 475, 704, 714, 947, 1087, 1630 |
| Bst4CI | ACNGT | 5 cut(s) | 263, 464, 1546, 1975, 2691 |
| Bst6I | CTCTTC | 5 cut(s) | 1126, 1702, 2193, 2253, 2491 |
| BstACI | GRCGYC | 1 cut(s) | 374 |
| BstAFI | CTTAAG | 1 cut(s) | 598 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1182 |
| BstBAI | YACGTR | 2 cut(s) | 1139, 2834 |
| BstC8I | GCNNGC | 4 cut(s) | 1239, 1369, 2109, 2339 |
| BstDSI | CCRYGG | 1 cut(s) | 817 |
| BstMAI | GTCTC | 4 cut(s) | 733, 1612, 1847, 2398 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 401, 622, 947, 1182, 1286, 1394, 2249, 2883 |
| BstNI | CCWGG | 6 cut(s) | 475, 704, 714, 947, 1087, 1630 |
| BstNSI | RCATGY | 3 cut(s) | 800, 1241, 1245 |
| BstSCI | CCNGG | 8 cut(s) | 177, 178, 473, 702, 712, 945, 1085, 1628 |
| BstSFI | CTRYAG | 4 cut(s) | 54, 678, 1820, 1897 |
| BstV2I | GAAGAC | 2 cut(s) | 42, 528 |
| BstX2I | RGATCY | 2 cut(s) | 1893, 1911 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 486 |
| BstYI | RGATCY | 2 cut(s) | 1893, 1911 |
| Bsu36I | CCTNAGG | 1 cut(s) | 785 |
| BsuI | GTATCC | 1 cut(s) | 219 |
| BsuRI | GGCC | 4 cut(s) | 478, 717, 941, 1924 |
| BtgI | CCRYGG | 1 cut(s) | 817 |
| BtgZI | GCGATG | 1 cut(s) | 1235 |
| BtsIMutI | CAGTG | 7 cut(s) | 80, 998, 1419, 1551, 1584, 2025, 2788 |
| BveI | ACCTGC | 2 cut(s) | 1362, 1759 |
| Cac8I | GCNNGC | 4 cut(s) | 1239, 1369, 2109, 2339 |
| CciI | TCATGA | 2 cut(s) | 397, 1318 |
| Cfr10I | RCCGGY | 1 cut(s) | 835 |
| Cfr13I | GGNCC | 3 cut(s) | 814, 940, 963 |
| Cfr9I | CCCGGG | 1 cut(s) | 178 |
| CseI | GACGC | 2 cut(s) | 363, 2509 |
| Csp6I | GTAC | 8 cut(s) | 696, 781, 891, 1136, 1512, 1788, 1976, 2150 |
| CspAI | ACCGGT | 1 cut(s) | 835 |
| CviQI | GTAC | 8 cut(s) | 696, 781, 891, 1136, 1512, 1788, 1976, 2150 |
| DraIII | CACNNNGTG | 1 cut(s) | 2837 |
| EaeI | YGGCCR | 2 cut(s) | 715, 1922 |
| Eam1104I | CTCTTC | 5 cut(s) | 1126, 1702, 2193, 2253, 2491 |
| EarI | CTCTTC | 5 cut(s) | 1126, 1702, 2193, 2253, 2491 |
| Ecl136II | GAGCTC | 1 cut(s) | 2484 |
| Eco24I | GRGCYC | 1 cut(s) | 2486 |
| Eco31I | GGTCTC | 1 cut(s) | 2398 |
| Eco47I | GGWCC | 2 cut(s) | 814, 963 |
| Eco53kI | GAGCTC | 1 cut(s) | 2484 |
| Eco57I | CTGAAG | 2 cut(s) | 303, 437 |
| Eco81I | CCTNAGG | 1 cut(s) | 785 |
| Eco88I | CYCGRG | 2 cut(s) | 178, 1507 |
| EcoICRI | GAGCTC | 1 cut(s) | 2484 |
| EcoO109I | RGGNCCY | 1 cut(s) | 940 |
| EcoRII | CCWGG | 6 cut(s) | 473, 702, 712, 945, 1085, 1628 |
| EcoT22I | ATGCAT | 4 cut(s) | 1178, 1187, 1243, 2535 |
| EcoT38I | GRGCYC | 1 cut(s) | 2486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1003, 1035 |
| FaqI | GGGAC | 2 cut(s) | 307, 2842 |
| FauI | CCCGC | 1 cut(s) | 301 |
| FblI | GTMKAC | 1 cut(s) | 2051 |
| FriOI | GRGCYC | 1 cut(s) | 2486 |
| FspBI | CTAG | 3 cut(s) | 699, 1355, 2750 |
| GsaI | CCCAGC | 2 cut(s) | 63, 1284 |
| GsuI | CTGGAG | 3 cut(s) | 42, 929, 2049 |
| HaeIII | GGCC | 4 cut(s) | 478, 717, 941, 1924 |
| HapII | CCGG | 4 cut(s) | 179, 836, 2375, 2883 |
| HgaI | GACGC | 2 cut(s) | 363, 2509 |
| Hin1I | GRCGYC | 1 cut(s) | 374 |
| HincII | GTYRAC | 3 cut(s) | 378, 1674, 2416 |
| HindII | GTYRAC | 3 cut(s) | 378, 1674, 2416 |
| HpaI | GTTAAC | 1 cut(s) | 1674 |
| HpaII | CCGG | 4 cut(s) | 179, 836, 2375, 2883 |
| Hpy166II | GTNNAC | 7 cut(s) | 378, 669, 747, 1674, 2052, 2270, 2416 |
| Hpy8I | GTNNAC | 7 cut(s) | 378, 669, 747, 1674, 2052, 2270, 2416 |
| Hpy99I | CGWCG | 2 cut(s) | 49, 2548 |
| HpyCH4III | ACNGT | 5 cut(s) | 263, 464, 1546, 1975, 2691 |
| HpyCH4IV | ACGT | 4 cut(s) | 1138, 1649, 2224, 2833 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 401, 622, 947, 1182, 1286, 1394, 2249, 2883 |
| HpySE526I | ACGT | 4 cut(s) | 1138, 1649, 2224, 2833 |
| Hsp92I | GRCGYC | 1 cut(s) | 374 |
| Kpn2I | TCCGGA | 1 cut(s) | 2374 |
| KpnI | GGTACC | 1 cut(s) | 1515 |
| KspAI | GTTAAC | 1 cut(s) | 1674 |
| LguI | GCTCTTC | 1 cut(s) | 2491 |
| LmnI | GCTCC | 6 cut(s) | 190, 232, 596, 1410, 1583, 2566 |
| MaeI | CTAG | 3 cut(s) | 699, 1355, 2750 |
| MaeII | ACGT | 4 cut(s) | 1138, 1649, 2224, 2833 |
| MaeIII | GTNAC | 3 cut(s) | 277, 329, 489 |
| MfeI | CAATTG | 2 cut(s) | 825, 2319 |
| MflI | RGATCY | 2 cut(s) | 1893, 1911 |
| MhlI | GDGCHC | 2 cut(s) | 1415, 2486 |
| MlsI | TGGCCA | 1 cut(s) | 1924 |
| MluNI | TGGCCA | 1 cut(s) | 1924 |
| MlyI | GAGTC | 5 cut(s) | 542, 1728, 1849, 1878, 2449 |
| MmeI | TCCRAC | 3 cut(s) | 45, 1605, 2175 |
| Mox20I | TGGCCA | 1 cut(s) | 1924 |
| Mph1103I | ATGCAT | 4 cut(s) | 1178, 1187, 1243, 2535 |
| MroI | TCCGGA | 1 cut(s) | 2374 |
| MscI | TGGCCA | 1 cut(s) | 1924 |
| MseI | TTAA | 9 cut(s) | 123, 495, 599, 1022, 1496, 1538, 1673, 2685, 2841 |
| MslI | CAYNNNNRTG | 6 cut(s) | 396, 452, 484, 562, 1242, 2282 |
| Msp20I | TGGCCA | 1 cut(s) | 1924 |
| MspA1I | CMGCKG | 3 cut(s) | 59, 407, 2240 |
| MspCI | CTTAAG | 1 cut(s) | 598 |
| MspI | CCGG | 4 cut(s) | 179, 836, 2375, 2883 |
| MspR9I | CCNGG | 8 cut(s) | 179, 180, 475, 704, 714, 947, 1087, 1630 |
| MunI | CAATTG | 2 cut(s) | 825, 2319 |
| Mva1269I | GAATGC | 1 cut(s) | 1618 |
| MvaI | CCWGG | 6 cut(s) | 475, 704, 714, 947, 1087, 1630 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 401, 622, 947, 1182, 1286, 1394, 2249, 2883 |
| NciI | CCSGG | 2 cut(s) | 179, 180 |
| NlaIV | GGNNCC | 6 cut(s) | 78, 570, 1513, 1579, 1749, 2235 |
| NmuCI | GTSAC | 3 cut(s) | 277, 329, 489 |
| NsiI | ATGCAT | 4 cut(s) | 1178, 1187, 1243, 2535 |
| NspI | RCATGY | 3 cut(s) | 800, 1241, 1245 |
| PaeI | GCATGC | 1 cut(s) | 1241 |
| PagI | TCATGA | 2 cut(s) | 397, 1318 |
| PaqCI | CACCTGC | 1 cut(s) | 1759 |
| PciSI | GCTCTTC | 1 cut(s) | 2491 |
| PctI | GAATGC | 1 cut(s) | 1618 |
| PfeI | GAWTC | 8 cut(s) | 152, 383, 1090, 1637, 1948, 1982, 2303, 2912 |
| PflFI | GACNNNGTC | 2 cut(s) | 1546, 1648 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 86, 2027 |
| PinAI | ACCGGT | 1 cut(s) | 835 |
| PleI | GAGTC | 5 cut(s) | 541, 1727, 1848, 1877, 2448 |
| PpsI | GAGTC | 5 cut(s) | 541, 1727, 1848, 1877, 2448 |
| Ppu21I | YACGTR | 2 cut(s) | 1139, 2834 |
| PsiI | TTATAA | 2 cut(s) | 1701, 2637 |
| Psp124BI | GAGCTC | 1 cut(s) | 2486 |
| Psp6I | CCWGG | 6 cut(s) | 473, 702, 712, 945, 1085, 1628 |
| PspFI | CCCAGC | 2 cut(s) | 59, 1280 |
| PspGI | CCWGG | 6 cut(s) | 473, 702, 712, 945, 1085, 1628 |
| PspN4I | GGNNCC | 6 cut(s) | 78, 570, 1513, 1579, 1749, 2235 |
| PspPI | GGNCC | 3 cut(s) | 814, 940, 963 |
| PstI | CTGCAG | 3 cut(s) | 58, 682, 1901 |
| PsuI | RGATCY | 2 cut(s) | 1893, 1911 |
| PsyI | GACNNNGTC | 2 cut(s) | 1546, 1648 |
| PvuII | CAGCTG | 3 cut(s) | 59, 407, 2240 |
| RsaI | GTAC | 8 cut(s) | 697, 782, 892, 1137, 1513, 1789, 1977, 2151 |
| RsaNI | GTAC | 8 cut(s) | 696, 781, 891, 1136, 1512, 1788, 1976, 2150 |
| RseI | CAYNNNNRTG | 6 cut(s) | 396, 452, 484, 562, 1242, 2282 |
| SacI | GAGCTC | 1 cut(s) | 2486 |
| SapI | GCTCTTC | 1 cut(s) | 2491 |
| SaqAI | TTAA | 9 cut(s) | 123, 495, 599, 1022, 1496, 1538, 1673, 2685, 2841 |
| Sau96I | GGNCC | 3 cut(s) | 814, 940, 963 |
| SchI | GAGTC | 5 cut(s) | 542, 1728, 1849, 1878, 2449 |
| ScrFI | CCNGG | 8 cut(s) | 179, 180, 475, 704, 714, 947, 1087, 1630 |
| SduI | GDGCHC | 2 cut(s) | 1415, 2486 |
| SfcI | CTRYAG | 4 cut(s) | 54, 678, 1820, 1897 |
| SinI | GGWCC | 2 cut(s) | 814, 963 |
| SmaI | CCCGGG | 1 cut(s) | 180 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 396, 452, 484, 562, 1242, 2282 |
| SmlI | CTYRAG | 7 cut(s) | 598, 1259, 1810, 1844, 1915, 2741, 2807 |
| SmoI | CTYRAG | 7 cut(s) | 598, 1259, 1810, 1844, 1915, 2741, 2807 |
| SpeI | ACTAGT | 1 cut(s) | 1354 |
| SphI | GCATGC | 1 cut(s) | 1241 |
| SsiI | CCGC | 3 cut(s) | 200, 203, 308 |
| SspI | AATATT | 1 cut(s) | 2119 |
| SspMI | CTAG | 3 cut(s) | 699, 1355, 2750 |
| SstI | GAGCTC | 1 cut(s) | 2486 |
| StyD4I | CCNGG | 8 cut(s) | 177, 178, 473, 702, 712, 945, 1085, 1628 |
| TaaI | ACNGT | 5 cut(s) | 263, 464, 1546, 1975, 2691 |
| TaiI | ACGT | 4 cut(s) | 1141, 1652, 2227, 2836 |
| TaqI | TCGA | 6 cut(s) | 104, 150, 1144, 1610, 2546, 2612 |
| TatI | WGTACW | 3 cut(s) | 890, 1787, 1975 |
| TauI | GCSGC | 2 cut(s) | 203, 206 |
| TfiI | GAWTC | 8 cut(s) | 152, 383, 1090, 1637, 1948, 1982, 2303, 2912 |
| Tru1I | TTAA | 9 cut(s) | 123, 495, 599, 1022, 1496, 1538, 1673, 2685, 2841 |
| Tru9I | TTAA | 9 cut(s) | 123, 495, 599, 1022, 1496, 1538, 1673, 2685, 2841 |
| TscAI | CASTG | 7 cut(s) | 87, 998, 1426, 1551, 1591, 2032, 2788 |
| TseFI | GTSAC | 3 cut(s) | 277, 329, 489 |
| Tsp45I | GTSAC | 3 cut(s) | 277, 329, 489 |
| TspGWI | ACGGA | 1 cut(s) | 806 |
| TspMI | CCCGGG | 1 cut(s) | 178 |
| TspRI | CASTG | 7 cut(s) | 87, 998, 1426, 1551, 1591, 2032, 2788 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1546, 1648 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 86, 2027 |
| Vha464I | CTTAAG | 1 cut(s) | 598 |
| VpaK11BI | GGWCC | 2 cut(s) | 814, 963 |
| XapI | RAATTY | 2 cut(s) | 145, 549 |
| XbaI | TCTAGA | 1 cut(s) | 2749 |
| XceI | RCATGY | 3 cut(s) | 800, 1241, 1245 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 17 |
| XmaI | CCCGGG | 1 cut(s) | 178 |
| XmiI | GTMKAC | 1 cut(s) | 2051 |
| XspI | CTAG | 3 cut(s) | 699, 1355, 2750 |
| Zsp2I | ATGCAT | 4 cut(s) | 1178, 1187, 1243, 2535 |