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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 7 cut(s) | 110, 225, 284, 329, 408, 480, 489 |
| AclWI | GGATC | 5 cut(s) | 182, 195, 210, 344, 464 |
| AcoI | YGGCCR | 1 cut(s) | 272 |
| AfaI | GTAC | 1 cut(s) | 718 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 140, 568, 599, 614, 615 |
| AgsI | TTSAA | 4 cut(s) | 67, 102, 232, 623 |
| AjnI | CCWGG | 2 cut(s) | 190, 343 |
| AluBI | AGCT | 1 cut(s) | 61 |
| AluI | AGCT | 1 cut(s) | 61 |
| AlwI | GGATC | 5 cut(s) | 182, 195, 210, 344, 464 |
| Ama87I | CYCGRG | 2 cut(s) | 452, 608 |
| AoxI | GGCC | 3 cut(s) | 22, 272, 708 |
| ApaI | GGGCCC | 1 cut(s) | 712 |
| ApeKI | GCWGC | 2 cut(s) | 76, 572 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 472 |
| AspS9I | GGNCC | 4 cut(s) | 296, 679, 708, 709 |
| AsuC2I | CCSGG | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 3 cut(s) | 266, 413, 454 |
| AvaI | CYCGRG | 2 cut(s) | 452, 608 |
| AvaII | GGWCC | 2 cut(s) | 296, 679 |
| BaeGI | GKGCMC | 2 cut(s) | 46, 712 |
| BamHI | GGATCC | 1 cut(s) | 187 |
| BanII | GRGCYC | 3 cut(s) | 592, 704, 712 |
| BbsI | GAAGAC | 1 cut(s) | 550 |
| BbvI | GCAGC | 2 cut(s) | 63, 559 |
| BccI | CCATC | 2 cut(s) | 398, 650 |
| BceAI | ACGGC | 1 cut(s) | 287 |
| BciT130I | CCWGG | 2 cut(s) | 192, 345 |
| BcnI | CCSGG | 1 cut(s) | 135 |
| BfaI | CTAG | 2 cut(s) | 525, 705 |
| BisI | GCNGC | 4 cut(s) | 77, 481, 490, 573 |
| BlsI | GCNGC | 4 cut(s) | 78, 482, 491, 574 |
| BmcAI | AGTACT | 1 cut(s) | 718 |
| Bme1390I | CCNGG | 3 cut(s) | 135, 192, 345 |
| Bme18I | GGWCC | 2 cut(s) | 296, 679 |
| BmeT110I | CYCGRG | 2 cut(s) | 452, 608 |
| BmgT120I | GGNCC | 4 cut(s) | 296, 679, 708, 709 |
| BmiI | GGNNCC | 6 cut(s) | 54, 189, 297, 591, 681, 710 |
| BmrFI | CCNGG | 3 cut(s) | 135, 192, 345 |
| BpiI | GAAGAC | 1 cut(s) | 550 |
| BpmI | CTGGAG | 1 cut(s) | 567 |
| Bpu10I | CCTNAGC | 1 cut(s) | 83 |
| BpuMI | CCSGG | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 4 cut(s) | 134, 220, 344, 598 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 540, 570 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 140, 568, 599, 614, 615 |
| Bse1I | ACTGG | 1 cut(s) | 451 |
| BseBI | CCWGG | 2 cut(s) | 192, 345 |
| BseDI | CCNNGG | 4 cut(s) | 134, 220, 344, 598 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 140, 568, 599, 614, 615 |
| BseMII | CTCAG | 1 cut(s) | 269 |
| BseNI | ACTGG | 1 cut(s) | 451 |
| BseRI | GAGGAG | 1 cut(s) | 17 |
| BseSI | GKGCMC | 2 cut(s) | 46, 712 |
| BseXI | GCAGC | 2 cut(s) | 63, 559 |
| BseYI | CCCAGC | 1 cut(s) | 174 |
| BshFI | GGCC | 3 cut(s) | 24, 274, 710 |
| BsiHKCI | CYCGRG | 2 cut(s) | 452, 608 |
| BsiSI | CCGG | 1 cut(s) | 134 |
| BslFI | GGGAC | 2 cut(s) | 160, 434 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 140, 568, 599, 614, 615 |
| BsmFI | GGGAC | 2 cut(s) | 160, 434 |
| BsnI | GGCC | 3 cut(s) | 24, 274, 710 |
| BsoBI | CYCGRG | 2 cut(s) | 452, 608 |
| Bsp120I | GGGCCC | 1 cut(s) | 708 |
| Bsp1286I | GDGCHC | 4 cut(s) | 46, 592, 704, 712 |
| Bsp143I | GATC | 4 cut(s) | 187, 202, 336, 456 |
| Bsp19I | CCATGG | 1 cut(s) | 220 |
| BspACI | CCGC | 7 cut(s) | 110, 225, 284, 329, 408, 480, 489 |
| BspANI | GGCC | 3 cut(s) | 24, 274, 710 |
| BspCNI | CTCAG | 1 cut(s) | 270 |
| BspLI | GGNNCC | 6 cut(s) | 54, 189, 297, 591, 681, 710 |
| BspPI | GGATC | 5 cut(s) | 182, 195, 210, 344, 464 |
| BsrI | ACTGG | 1 cut(s) | 451 |
| BssECI | CCNNGG | 4 cut(s) | 134, 220, 344, 598 |
| BssMI | GATC | 4 cut(s) | 187, 202, 336, 456 |
| BssT1I | CCWWGG | 2 cut(s) | 220, 598 |
| Bst2UI | CCWGG | 2 cut(s) | 192, 345 |
| Bst6I | CTCTTC | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 1 cut(s) | 648 |
| BstDEI | CTNAG | 2 cut(s) | 83, 278 |
| BstDSI | CCRYGG | 1 cut(s) | 220 |
| BstKTI | GATC | 4 cut(s) | 190, 205, 339, 459 |
| BstMBI | GATC | 4 cut(s) | 187, 202, 336, 456 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 328, 486, 489, 498, 521 |
| BstNI | CCWGG | 2 cut(s) | 192, 345 |
| BstNSI | RCATGY | 1 cut(s) | 654 |
| BstSCI | CCNGG | 3 cut(s) | 133, 190, 343 |
| BstSLI | GKGCMC | 2 cut(s) | 46, 712 |
| BstV1I | GCAGC | 2 cut(s) | 63, 559 |
| BstV2I | GAAGAC | 1 cut(s) | 550 |
| BstX2I | RGATCY | 2 cut(s) | 187, 202 |
| BstYI | RGATCY | 2 cut(s) | 187, 202 |
| BsuRI | GGCC | 3 cut(s) | 24, 274, 710 |
| BtgI | CCRYGG | 1 cut(s) | 220 |
| BtsI | GCAGTG | 1 cut(s) | 490 |
| BtsIMutI | CAGTG | 2 cut(s) | 275, 490 |
| Cac8I | GCNNGC | 1 cut(s) | 648 |
| Cfr13I | GGNCC | 4 cut(s) | 296, 679, 708, 709 |
| Csp6I | GTAC | 1 cut(s) | 717 |
| CviAII | CATG | 4 cut(s) | 125, 221, 382, 651 |
| CviQI | GTAC | 1 cut(s) | 717 |
| DdeI | CTNAG | 2 cut(s) | 83, 278 |
| DpnI | GATC | 4 cut(s) | 189, 204, 338, 458 |
| DpnII | GATC | 4 cut(s) | 187, 202, 336, 456 |
| EaeI | YGGCCR | 1 cut(s) | 272 |
| Eam1104I | CTCTTC | 1 cut(s) | 463 |
| EarI | CTCTTC | 1 cut(s) | 463 |
| EciI | GGCGGA | 1 cut(s) | 299 |
| Eco130I | CCWWGG | 2 cut(s) | 220, 598 |
| Eco24I | GRGCYC | 3 cut(s) | 592, 704, 712 |
| Eco47I | GGWCC | 2 cut(s) | 296, 679 |
| Eco88I | CYCGRG | 2 cut(s) | 452, 608 |
| EcoO109I | RGGNCCY | 1 cut(s) | 708 |
| EcoRII | CCWGG | 2 cut(s) | 190, 343 |
| EcoT14I | CCWWGG | 2 cut(s) | 220, 598 |
| EcoT38I | GRGCYC | 3 cut(s) | 592, 704, 712 |
| ErhI | CCWWGG | 2 cut(s) | 220, 598 |
| FaeI | CATG | 4 cut(s) | 128, 224, 385, 654 |
| FaiI | YATR | 6 cut(s) | 126, 222, 383, 425, 652, 714 |
| FaqI | GGGAC | 2 cut(s) | 160, 434 |
| FatI | CATG | 4 cut(s) | 124, 220, 381, 650 |
| FauI | CCCGC | 1 cut(s) | 103 |
| Fnu4HI | GCNGC | 4 cut(s) | 77, 481, 490, 573 |
| FriOI | GRGCYC | 3 cut(s) | 592, 704, 712 |
| Fsp4HI | GCNGC | 4 cut(s) | 77, 481, 490, 573 |
| FspBI | CTAG | 2 cut(s) | 525, 705 |
| GluI | GCNGC | 4 cut(s) | 77, 481, 490, 573 |
| GsaI | CCCAGC | 1 cut(s) | 178 |
| GsuI | CTGGAG | 1 cut(s) | 567 |
| HaeIII | GGCC | 3 cut(s) | 24, 274, 710 |
| HapII | CCGG | 1 cut(s) | 134 |
| Hin1II | CATG | 4 cut(s) | 128, 224, 385, 654 |
| HindIII | AAGCTT | 1 cut(s) | 59 |
| HinfI | GANTC | 5 cut(s) | 130, 242, 370, 450, 473 |
| HpaII | CCGG | 1 cut(s) | 134 |
| HphI | GGTGA | 3 cut(s) | 266, 413, 454 |
| Hpy166II | GTNNAC | 1 cut(s) | 679 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 663 |
| Hpy188III | TCNNGA | 1 cut(s) | 454 |
| Hpy8I | GTNNAC | 1 cut(s) | 679 |
| Hpy99I | CGWCG | 4 cut(s) | 92, 95, 464, 467 |
| HpyAV | CCTTC | 1 cut(s) | 173 |
| HpyCH4IV | ACGT | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 3 cut(s) | 124, 381, 575 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 328, 486, 489, 498, 521 |
| HpyF3I | CTNAG | 2 cut(s) | 83, 278 |
| HpySE526I | ACGT | 1 cut(s) | 97 |
| Hsp92II | CATG | 4 cut(s) | 128, 224, 385, 654 |
| Kzo9I | GATC | 4 cut(s) | 187, 202, 336, 456 |
| LmnI | GCTCC | 2 cut(s) | 84, 595 |
| Lsp1109I | GCAGC | 2 cut(s) | 63, 559 |
| MaeI | CTAG | 2 cut(s) | 525, 705 |
| MaeII | ACGT | 1 cut(s) | 97 |
| MaeIII | GTNAC | 2 cut(s) | 254, 442 |
| MalI | GATC | 4 cut(s) | 189, 204, 338, 458 |
| MboI | GATC | 4 cut(s) | 187, 202, 336, 456 |
| MboII | GAAGA | 2 cut(s) | 480, 550 |
| MfeI | CAATTG | 1 cut(s) | 576 |
| MflI | RGATCY | 2 cut(s) | 187, 202 |
| MhlI | GDGCHC | 4 cut(s) | 46, 592, 704, 712 |
| MluCI | AATT | 1 cut(s) | 576 |
| MlyI | GAGTC | 1 cut(s) | 444 |
| MmeI | TCCRAC | 5 cut(s) | 139, 165, 219, 323, 641 |
| MnlI | CCTC | 9 cut(s) | 35, 38, 253, 273, 327, 421, 425, 502, 626 |
| MroXI | GAANNNNTTC | 1 cut(s) | 472 |
| MseI | TTAA | 1 cut(s) | 724 |
| MspI | CCGG | 1 cut(s) | 134 |
| MspR9I | CCNGG | 3 cut(s) | 135, 192, 345 |
| MunI | CAATTG | 1 cut(s) | 576 |
| MvaI | CCWGG | 2 cut(s) | 192, 345 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 328, 486, 489, 498, 521 |
| NciI | CCSGG | 1 cut(s) | 135 |
| NcoI | CCATGG | 1 cut(s) | 220 |
| NdeII | GATC | 4 cut(s) | 187, 202, 336, 456 |
| NlaIII | CATG | 4 cut(s) | 128, 224, 385, 654 |
| NlaIV | GGNNCC | 6 cut(s) | 54, 189, 297, 591, 681, 710 |
| NmuCI | GTSAC | 2 cut(s) | 254, 442 |
| NspI | RCATGY | 1 cut(s) | 654 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 459 |
| PdmI | GAANNNNTTC | 1 cut(s) | 472 |
| PfeI | GAWTC | 4 cut(s) | 130, 242, 370, 473 |
| PkrI | GCNGC | 4 cut(s) | 78, 482, 491, 574 |
| PleI | GAGTC | 1 cut(s) | 444 |
| PpsI | GAGTC | 1 cut(s) | 444 |
| Psp6I | CCWGG | 2 cut(s) | 190, 343 |
| PspFI | CCCAGC | 1 cut(s) | 174 |
| PspGI | CCWGG | 2 cut(s) | 190, 343 |
| PspN4I | GGNNCC | 6 cut(s) | 54, 189, 297, 591, 681, 710 |
| PspOMI | GGGCCC | 1 cut(s) | 708 |
| PspPI | GGNCC | 4 cut(s) | 296, 679, 708, 709 |
| PsuI | RGATCY | 2 cut(s) | 187, 202 |
| RsaI | GTAC | 1 cut(s) | 718 |
| RsaNI | GTAC | 1 cut(s) | 717 |
| SaqAI | TTAA | 1 cut(s) | 724 |
| SatI | GCNGC | 4 cut(s) | 77, 481, 490, 573 |
| Sau3AI | GATC | 4 cut(s) | 187, 202, 336, 456 |
| Sau96I | GGNCC | 4 cut(s) | 296, 679, 708, 709 |
| ScaI | AGTACT | 1 cut(s) | 718 |
| SchI | GAGTC | 1 cut(s) | 444 |
| ScrFI | CCNGG | 3 cut(s) | 135, 192, 345 |
| SduI | GDGCHC | 4 cut(s) | 46, 592, 704, 712 |
| SetI | ASST | 7 cut(s) | 63, 100, 196, 395, 513, 637, 670 |
| SinI | GGWCC | 2 cut(s) | 296, 679 |
| Sse9I | AATT | 1 cut(s) | 576 |
| SsiI | CCGC | 7 cut(s) | 110, 225, 284, 329, 408, 480, 489 |
| SspMI | CTAG | 2 cut(s) | 525, 705 |
| StyD4I | CCNGG | 3 cut(s) | 133, 190, 343 |
| StyI | CCWWGG | 2 cut(s) | 220, 598 |
| TaiI | ACGT | 1 cut(s) | 100 |
| TaqI | TCGA | 1 cut(s) | 459 |
| TasI | AATT | 1 cut(s) | 576 |
| TatI | WGTACW | 1 cut(s) | 716 |
| TauI | GCSGC | 2 cut(s) | 483, 492 |
| TfiI | GAWTC | 4 cut(s) | 130, 242, 370, 473 |
| Tru1I | TTAA | 1 cut(s) | 724 |
| Tru9I | TTAA | 1 cut(s) | 724 |
| TscAI | CASTG | 2 cut(s) | 282, 490 |
| TseFI | GTSAC | 2 cut(s) | 254, 442 |
| TseI | GCWGC | 2 cut(s) | 76, 572 |
| Tsp45I | GTSAC | 2 cut(s) | 254, 442 |
| TspDTI | ATGAA | 1 cut(s) | 234 |
| TspGWI | ACGGA | 3 cut(s) | 108, 164, 480 |
| TspRI | CASTG | 2 cut(s) | 282, 490 |
| VpaK11BI | GGWCC | 2 cut(s) | 296, 679 |
| XceI | RCATGY | 1 cut(s) | 654 |
| XmnI | GAANNNNTTC | 1 cut(s) | 472 |
| XspI | CTAG | 2 cut(s) | 525, 705 |
| ZrmI | AGTACT | 1 cut(s) | 718 |