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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 50, 132, 938 |
| AclWI | GGATC | 4 cut(s) | 596, 761, 929, 942 |
| AcoI | YGGCCR | 2 cut(s) | 70, 555 |
| AcuI | CTGAAG | 2 cut(s) | 399, 634 |
| AfaI | GTAC | 1 cut(s) | 1003 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 966 |
| AflII | CTTAAG | 1 cut(s) | 545 |
| AgeI | ACCGGT | 1 cut(s) | 959 |
| AjnI | CCWGG | 2 cut(s) | 72, 850 |
| AluBI | AGCT | 5 cut(s) | 26, 116, 217, 520, 688 |
| AluI | AGCT | 5 cut(s) | 26, 116, 217, 520, 688 |
| AlwI | GGATC | 4 cut(s) | 596, 761, 929, 942 |
| AoxI | GGCC | 2 cut(s) | 70, 555 |
| ApeKI | GCWGC | 2 cut(s) | 520, 699 |
| AsiGI | ACCGGT | 1 cut(s) | 959 |
| AspS9I | GGNCC | 2 cut(s) | 169, 868 |
| AsuC2I | CCSGG | 1 cut(s) | 1178 |
| AsuHPI | GGTGA | 6 cut(s) | 24, 583, 623, 949, 974, 1058 |
| AvaII | GGWCC | 2 cut(s) | 169, 868 |
| AxyI | CCTNAGG | 1 cut(s) | 607 |
| BalI | TGGCCA | 2 cut(s) | 72, 557 |
| BamHI | GGATCC | 1 cut(s) | 934 |
| BbvI | GCAGC | 2 cut(s) | 507, 711 |
| BccI | CCATC | 4 cut(s) | 578, 602, 653, 1036 |
| BciT130I | CCWGG | 2 cut(s) | 74, 852 |
| BciVI | GTATCC | 1 cut(s) | 472 |
| BcnI | CCSGG | 1 cut(s) | 1178 |
| BfaI | CTAG | 1 cut(s) | 1219 |
| BfrI | CTTAAG | 1 cut(s) | 545 |
| BfuI | GTATCC | 1 cut(s) | 472 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 563 |
| BisI | GCNGC | 3 cut(s) | 132, 521, 700 |
| BlsI | GCNGC | 3 cut(s) | 133, 522, 701 |
| Bme1390I | CCNGG | 3 cut(s) | 74, 852, 1178 |
| Bme18I | GGWCC | 2 cut(s) | 169, 868 |
| BmgT120I | GGNCC | 2 cut(s) | 169, 868 |
| BmiI | GGNNCC | 2 cut(s) | 870, 936 |
| BmrFI | CCNGG | 3 cut(s) | 74, 852, 1178 |
| BmsI | GCATC | 3 cut(s) | 9, 87, 732 |
| BpmI | CTGGAG | 1 cut(s) | 1055 |
| BpuMI | CCSGG | 1 cut(s) | 1178 |
| BsaBI | GATNNNNATC | 2 cut(s) | 498, 593 |
| BsaJI | CCNNGG | 1 cut(s) | 73 |
| BsaWI | WCCGGW | 1 cut(s) | 959 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 966 |
| Bse118I | RCCGGY | 2 cut(s) | 695, 959 |
| Bse1I | ACTGG | 2 cut(s) | 331, 784 |
| Bse21I | CCTNAGG | 1 cut(s) | 607 |
| Bse3DI | GCAATG | 1 cut(s) | 437 |
| Bse8I | GATNNNNATC | 2 cut(s) | 498, 593 |
| BseBI | CCWGG | 2 cut(s) | 74, 852 |
| BseDI | CCNNGG | 1 cut(s) | 73 |
| BseGI | GGATG | 5 cut(s) | 406, 589, 594, 664, 900 |
| BseJI | GATNNNNATC | 2 cut(s) | 498, 593 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 966 |
| BseMI | GCAATG | 1 cut(s) | 437 |
| BseNI | ACTGG | 2 cut(s) | 331, 784 |
| BseRI | GAGGAG | 3 cut(s) | 260, 263, 478 |
| BseXI | GCAGC | 2 cut(s) | 507, 711 |
| BshFI | GGCC | 2 cut(s) | 72, 557 |
| BshTI | ACCGGT | 1 cut(s) | 959 |
| BsiSI | CCGG | 3 cut(s) | 696, 960, 1177 |
| BslFI | GGGAC | 1 cut(s) | 854 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 966 |
| BsmFI | GGGAC | 1 cut(s) | 854 |
| BsmI | GAATGC | 1 cut(s) | 1029 |
| BsnI | GGCC | 2 cut(s) | 72, 557 |
| Bsp143I | GATC | 4 cut(s) | 588, 708, 766, 934 |
| BspACI | CCGC | 3 cut(s) | 50, 132, 938 |
| BspANI | GGCC | 2 cut(s) | 72, 557 |
| BspHI | TCATGA | 1 cut(s) | 502 |
| BspLI | GGNNCC | 2 cut(s) | 870, 936 |
| BspPI | GGATC | 4 cut(s) | 596, 761, 929, 942 |
| BspTI | CTTAAG | 1 cut(s) | 545 |
| BsrDI | GCAATG | 1 cut(s) | 437 |
| BsrFI | RCCGGY | 2 cut(s) | 695, 959 |
| BsrI | ACTGG | 2 cut(s) | 331, 784 |
| BssAI | RCCGGY | 2 cut(s) | 695, 959 |
| BssECI | CCNNGG | 1 cut(s) | 73 |
| BssMI | GATC | 4 cut(s) | 588, 708, 766, 934 |
| Bst2UI | CCWGG | 2 cut(s) | 74, 852 |
| Bst4CI | ACNGT | 1 cut(s) | 1148 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstAFI | CTTAAG | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 3 cut(s) | 24, 416, 697 |
| BstDEI | CTNAG | 2 cut(s) | 607, 1122 |
| BstF5I | GGATG | 5 cut(s) | 406, 589, 594, 664, 900 |
| BstKTI | GATC | 4 cut(s) | 591, 711, 769, 937 |
| BstMBI | GATC | 4 cut(s) | 588, 708, 766, 934 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 140, 448, 563, 946, 1187 |
| BstNI | CCWGG | 2 cut(s) | 74, 852 |
| BstSCI | CCNGG | 3 cut(s) | 72, 850, 1176 |
| BstV1I | GCAGC | 2 cut(s) | 507, 711 |
| BstX2I | RGATCY | 2 cut(s) | 766, 934 |
| BstYI | RGATCY | 2 cut(s) | 766, 934 |
| Bsu36I | CCTNAGG | 1 cut(s) | 607 |
| BsuI | GTATCC | 1 cut(s) | 472 |
| BsuRI | GGCC | 2 cut(s) | 72, 557 |
| BtsCI | GGATG | 5 cut(s) | 406, 589, 594, 664, 900 |
| BtsIMutI | CAGTG | 1 cut(s) | 1144 |
| Cac8I | GCNNGC | 3 cut(s) | 24, 416, 697 |
| CciI | TCATGA | 1 cut(s) | 502 |
| Cfr10I | RCCGGY | 2 cut(s) | 695, 959 |
| Cfr13I | GGNCC | 2 cut(s) | 169, 868 |
| Csp6I | GTAC | 1 cut(s) | 1002 |
| CspAI | ACCGGT | 1 cut(s) | 959 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 307, 342, 513, 548 |
| CviAII | CATG | 8 cut(s) | 428, 503, 561, 670, 679, 751, 931, 1081 |
| CviQI | GTAC | 1 cut(s) | 1002 |
| DdeI | CTNAG | 2 cut(s) | 607, 1122 |
| DpnI | GATC | 4 cut(s) | 590, 710, 768, 936 |
| DpnII | GATC | 4 cut(s) | 588, 708, 766, 934 |
| EaeI | YGGCCR | 2 cut(s) | 70, 555 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco32I | GATATC | 1 cut(s) | 629 |
| Eco47I | GGWCC | 2 cut(s) | 169, 868 |
| Eco57I | CTGAAG | 2 cut(s) | 399, 634 |
| Eco81I | CCTNAGG | 1 cut(s) | 607 |
| EcoRII | CCWGG | 2 cut(s) | 72, 850 |
| EcoRV | GATATC | 1 cut(s) | 629 |
| EcoT22I | ATGCAT | 1 cut(s) | 1077 |
| FaeI | CATG | 8 cut(s) | 431, 506, 564, 673, 682, 754, 934, 1084 |
| FaqI | GGGAC | 1 cut(s) | 854 |
| FatI | CATG | 8 cut(s) | 427, 502, 560, 669, 678, 750, 930, 1080 |
| FauNDI | CATATG | 1 cut(s) | 484 |
| Fnu4HI | GCNGC | 3 cut(s) | 132, 521, 700 |
| FokI | GGATG | 5 cut(s) | 413, 581, 596, 671, 907 |
| Fsp4HI | GCNGC | 3 cut(s) | 132, 521, 700 |
| FspBI | CTAG | 1 cut(s) | 1219 |
| GluI | GCNGC | 3 cut(s) | 132, 521, 700 |
| GsuI | CTGGAG | 1 cut(s) | 1055 |
| HaeIII | GGCC | 2 cut(s) | 72, 557 |
| HapII | CCGG | 3 cut(s) | 696, 960, 1177 |
| Hin1II | CATG | 8 cut(s) | 431, 506, 564, 673, 682, 754, 934, 1084 |
| HincII | GTYRAC | 1 cut(s) | 900 |
| HindII | GTYRAC | 1 cut(s) | 900 |
| HinfI | GANTC | 4 cut(s) | 29, 356, 407, 951 |
| HpaII | CCGG | 3 cut(s) | 696, 960, 1177 |
| HphI | GGTGA | 6 cut(s) | 24, 583, 623, 949, 974, 1058 |
| Hpy166II | GTNNAC | 4 cut(s) | 318, 344, 900, 982 |
| Hpy188I | TCNGA | 4 cut(s) | 273, 653, 804, 858 |
| Hpy188III | TCNNGA | 2 cut(s) | 503, 1034 |
| Hpy8I | GTNNAC | 4 cut(s) | 318, 344, 900, 982 |
| HpyAV | CCTTC | 6 cut(s) | 374, 469, 574, 631, 648, 676 |
| HpyCH4III | ACNGT | 1 cut(s) | 1148 |
| HpyCH4IV | ACGT | 1 cut(s) | 551 |
| HpyCH4V | TGCA | 5 cut(s) | 284, 301, 350, 442, 1075 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 140, 448, 563, 946, 1187 |
| HpyF3I | CTNAG | 2 cut(s) | 607, 1122 |
| HpySE526I | ACGT | 1 cut(s) | 551 |
| Hsp92II | CATG | 8 cut(s) | 431, 506, 564, 673, 682, 754, 934, 1084 |
| KroI | GCCGGC | 1 cut(s) | 695 |
| KroNI | GCCGGC | 1 cut(s) | 697 |
| Kzo9I | GATC | 4 cut(s) | 588, 708, 766, 934 |
| LmnI | GCTCC | 4 cut(s) | 214, 292, 685, 1036 |
| Lsp1109I | GCAGC | 2 cut(s) | 507, 711 |
| LweI | GCATC | 3 cut(s) | 9, 87, 732 |
| MaeI | CTAG | 1 cut(s) | 1219 |
| MaeII | ACGT | 1 cut(s) | 551 |
| MaeIII | GTNAC | 2 cut(s) | 43, 1148 |
| MalI | GATC | 4 cut(s) | 590, 710, 768, 936 |
| MboI | GATC | 4 cut(s) | 588, 708, 766, 934 |
| MboII | GAAGA | 7 cut(s) | 160, 200, 640, 703, 742, 751, 926 |
| MflI | RGATCY | 2 cut(s) | 766, 934 |
| MlsI | TGGCCA | 2 cut(s) | 72, 557 |
| MluCI | AATT | 5 cut(s) | 123, 456, 529, 617, 877 |
| MluNI | TGGCCA | 2 cut(s) | 72, 557 |
| MlyI | GAGTC | 2 cut(s) | 23, 945 |
| Mox20I | TGGCCA | 2 cut(s) | 72, 557 |
| Mph1103I | ATGCAT | 1 cut(s) | 1077 |
| MroNI | GCCGGC | 1 cut(s) | 695 |
| MscI | TGGCCA | 2 cut(s) | 72, 557 |
| MseI | TTAA | 3 cut(s) | 6, 266, 546 |
| MslI | CAYNNNNRTG | 2 cut(s) | 395, 504 |
| Msp20I | TGGCCA | 2 cut(s) | 72, 557 |
| MspA1I | CMGCKG | 2 cut(s) | 26, 52 |
| MspCI | CTTAAG | 1 cut(s) | 545 |
| MspI | CCGG | 3 cut(s) | 696, 960, 1177 |
| MspR9I | CCNGG | 3 cut(s) | 74, 852, 1178 |
| Mva1269I | GAATGC | 1 cut(s) | 1029 |
| MvaI | CCWGG | 2 cut(s) | 74, 852 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 140, 448, 563, 946, 1187 |
| NaeI | GCCGGC | 1 cut(s) | 697 |
| NciI | CCSGG | 1 cut(s) | 1178 |
| NdeI | CATATG | 1 cut(s) | 484 |
| NdeII | GATC | 4 cut(s) | 588, 708, 766, 934 |
| NgoMIV | GCCGGC | 1 cut(s) | 695 |
| NlaIII | CATG | 8 cut(s) | 431, 506, 564, 673, 682, 754, 934, 1084 |
| NlaIV | GGNNCC | 2 cut(s) | 870, 936 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| NsiI | ATGCAT | 1 cut(s) | 1077 |
| PagI | TCATGA | 1 cut(s) | 502 |
| PctI | GAATGC | 1 cut(s) | 1029 |
| PdiI | GCCGGC | 1 cut(s) | 697 |
| PfeI | GAWTC | 2 cut(s) | 356, 407 |
| PinAI | ACCGGT | 1 cut(s) | 959 |
| PkrI | GCNGC | 3 cut(s) | 133, 522, 701 |
| PleI | GAGTC | 2 cut(s) | 23, 945 |
| PpsI | GAGTC | 2 cut(s) | 23, 945 |
| Psp6I | CCWGG | 2 cut(s) | 72, 850 |
| PspGI | CCWGG | 2 cut(s) | 72, 850 |
| PspN4I | GGNNCC | 2 cut(s) | 870, 936 |
| PspPI | GGNCC | 2 cut(s) | 169, 868 |
| PsuI | RGATCY | 2 cut(s) | 766, 934 |
| PvuII | CAGCTG | 1 cut(s) | 26 |
| RsaI | GTAC | 1 cut(s) | 1003 |
| RsaNI | GTAC | 1 cut(s) | 1002 |
| RseI | CAYNNNNRTG | 2 cut(s) | 395, 504 |
| SaqAI | TTAA | 3 cut(s) | 6, 266, 546 |
| SatI | GCNGC | 3 cut(s) | 132, 521, 700 |
| Sau3AI | GATC | 4 cut(s) | 588, 708, 766, 934 |
| Sau96I | GGNCC | 2 cut(s) | 169, 868 |
| SchI | GAGTC | 2 cut(s) | 23, 945 |
| ScrFI | CCNGG | 3 cut(s) | 74, 852, 1178 |
| SfaNI | GCATC | 3 cut(s) | 9, 87, 732 |
| SgrAI | CRCCGGYG | 1 cut(s) | 959 |
| SinI | GGWCC | 2 cut(s) | 169, 868 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 395, 504 |
| SmlI | CTYRAG | 1 cut(s) | 545 |
| SmoI | CTYRAG | 1 cut(s) | 545 |
| Sse9I | AATT | 5 cut(s) | 123, 456, 529, 617, 877 |
| SsiI | CCGC | 3 cut(s) | 50, 132, 938 |
| SspI | AATATT | 2 cut(s) | 325, 1012 |
| SspMI | CTAG | 1 cut(s) | 1219 |
| StyD4I | CCNGG | 3 cut(s) | 72, 850, 1176 |
| TaaI | ACNGT | 1 cut(s) | 1148 |
| TaiI | ACGT | 1 cut(s) | 554 |
| TaqI | TCGA | 3 cut(s) | 236, 737, 1060 |
| TasI | AATT | 5 cut(s) | 123, 456, 529, 617, 877 |
| TauI | GCSGC | 1 cut(s) | 134 |
| TfiI | GAWTC | 2 cut(s) | 356, 407 |
| Tru1I | TTAA | 3 cut(s) | 6, 266, 546 |
| Tru9I | TTAA | 3 cut(s) | 6, 266, 546 |
| TscAI | CASTG | 1 cut(s) | 1151 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 2 cut(s) | 520, 699 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 7 cut(s) | 210, 348, 488, 695, 852, 919, 1217 |
| TspRI | CASTG | 1 cut(s) | 1151 |
| Vha464I | CTTAAG | 1 cut(s) | 545 |
| VpaK11BI | GGWCC | 2 cut(s) | 169, 868 |
| XspI | CTAG | 1 cut(s) | 1219 |
| Zsp2I | ATGCAT | 1 cut(s) | 1077 |