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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 712 |
| Acc36I | ACCTGC | 1 cut(s) | 359 |
| AccII | CGCG | 2 cut(s) | 28, 137 |
| AciI | CCGC | 3 cut(s) | 135, 411, 527 |
| AcoI | YGGCCR | 1 cut(s) | 238 |
| AcsI | RAATTY | 3 cut(s) | 68, 449, 615 |
| AflIII | ACRYGT | 1 cut(s) | 509 |
| AgsI | TTSAA | 3 cut(s) | 328, 346, 607 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AluBI | AGCT | 4 cut(s) | 169, 373, 472, 691 |
| AluI | AGCT | 4 cut(s) | 169, 373, 472, 691 |
| Alw26I | GTCTC | 1 cut(s) | 144 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 373 |
| AoxI | GGCC | 3 cut(s) | 238, 395, 419 |
| ApeKI | GCWGC | 2 cut(s) | 370, 530 |
| ApoI | RAATTY | 3 cut(s) | 68, 449, 615 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 341 |
| AspS9I | GGNCC | 2 cut(s) | 395, 419 |
| AsuHPI | GGTGA | 1 cut(s) | 213 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 158, 190 |
| BbsI | GAAGAC | 1 cut(s) | 614 |
| BbvI | GCAGC | 2 cut(s) | 382, 517 |
| BccI | CCATC | 2 cut(s) | 192, 409 |
| BceAI | ACGGC | 1 cut(s) | 55 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BciVI | GTATCC | 1 cut(s) | 666 |
| BcoDI | GTCTC | 1 cut(s) | 144 |
| BfaI | CTAG | 2 cut(s) | 250, 520 |
| BfmI | CTRYAG | 1 cut(s) | 263 |
| BfuAI | ACCTGC | 1 cut(s) | 359 |
| BfuI | GTATCC | 1 cut(s) | 666 |
| BisI | GCNGC | 3 cut(s) | 371, 528, 531 |
| BlsI | GCNGC | 3 cut(s) | 372, 529, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 78 |
| BmgT120I | GGNCC | 2 cut(s) | 395, 419 |
| BmiI | GGNNCC | 1 cut(s) | 420 |
| BmrFI | CCNGG | 1 cut(s) | 78 |
| BmsI | GCATC | 3 cut(s) | 204, 261, 432 |
| BpiI | GAAGAC | 1 cut(s) | 614 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 35, 67 |
| Bpu10I | CCTNAGC | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 2 cut(s) | 77, 500 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bse1I | ACTGG | 1 cut(s) | 9 |
| Bse3DI | GCAATG | 1 cut(s) | 254 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseDI | CCNNGG | 2 cut(s) | 77, 500 |
| BseGI | GGATG | 3 cut(s) | 219, 420, 459 |
| BseMI | GCAATG | 1 cut(s) | 254 |
| BseMII | CTCAG | 2 cut(s) | 66, 536 |
| BseNI | ACTGG | 1 cut(s) | 9 |
| BseXI | GCAGC | 2 cut(s) | 382, 517 |
| BseYI | CCCAGC | 1 cut(s) | 366 |
| Bsh1236I | CGCG | 2 cut(s) | 28, 137 |
| BshFI | GGCC | 3 cut(s) | 240, 397, 421 |
| BslFI | GGGAC | 2 cut(s) | 237, 652 |
| BsmAI | GTCTC | 1 cut(s) | 144 |
| BsmBI | CGTCTC | 1 cut(s) | 144 |
| BsmFI | GGGAC | 2 cut(s) | 237, 652 |
| BsnI | GGCC | 3 cut(s) | 240, 397, 421 |
| Bsp19I | CCATGG | 1 cut(s) | 500 |
| Bsp68I | TCGCGA | 1 cut(s) | 28 |
| BspACI | CCGC | 3 cut(s) | 135, 411, 527 |
| BspANI | GGCC | 3 cut(s) | 240, 397, 421 |
| BspCNI | CTCAG | 2 cut(s) | 65, 537 |
| BspFNI | CGCG | 2 cut(s) | 28, 137 |
| BspHI | TCATGA | 1 cut(s) | 162 |
| BspLI | GGNNCC | 1 cut(s) | 420 |
| BspMAI | CTGCAG | 1 cut(s) | 267 |
| BspMI | ACCTGC | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 254 |
| BsrI | ACTGG | 1 cut(s) | 9 |
| BssECI | CCNNGG | 2 cut(s) | 77, 500 |
| BssT1I | CCWWGG | 1 cut(s) | 500 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 2 cut(s) | 207, 315 |
| Bst6I | CTCTTC | 1 cut(s) | 556 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 271 |
| BstC8I | GCNNGC | 1 cut(s) | 525 |
| BstDEI | CTNAG | 3 cut(s) | 52, 545, 632 |
| BstDSI | CCRYGG | 1 cut(s) | 500 |
| BstF5I | GGATG | 3 cut(s) | 219, 420, 459 |
| BstFNI | CGCG | 2 cut(s) | 28, 137 |
| BstMAI | GTCTC | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 271, 697 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstNSI | RCATGY | 2 cut(s) | 513, 709 |
| BstSCI | CCNGG | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 1 cut(s) | 263 |
| BstUI | CGCG | 2 cut(s) | 28, 137 |
| BstV1I | GCAGC | 2 cut(s) | 382, 517 |
| BstV2I | GAAGAC | 1 cut(s) | 614 |
| BsuI | GTATCC | 1 cut(s) | 666 |
| BsuRI | GGCC | 3 cut(s) | 240, 397, 421 |
| BtgI | CCRYGG | 1 cut(s) | 500 |
| BtsCI | GGATG | 3 cut(s) | 219, 420, 459 |
| BtsIMutI | CAGTG | 2 cut(s) | 320, 401 |
| BtuMI | TCGCGA | 1 cut(s) | 28 |
| BveI | ACCTGC | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 1 cut(s) | 525 |
| CaiI | CAGNNNCTG | 1 cut(s) | 373 |
| CciI | TCATGA | 1 cut(s) | 162 |
| Cfr13I | GGNCC | 2 cut(s) | 395, 419 |
| CseI | GACGC | 1 cut(s) | 126 |
| CviAII | CATG | 6 cut(s) | 106, 163, 501, 510, 591, 706 |
| CviJI | RGCY | 8 cut(s) | 169, 240, 373, 397, 421, 472, 530, 691 |
| CviKI_1 | RGCY | 8 cut(s) | 169, 240, 373, 397, 421, 472, 530, 691 |
| DdeI | CTNAG | 3 cut(s) | 52, 545, 632 |
| EaeI | YGGCCR | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 1 cut(s) | 556 |
| EarI | CTCTTC | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 1 cut(s) | 500 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 500 |
| ErhI | CCWWGG | 1 cut(s) | 500 |
| Esp3I | CGTCTC | 1 cut(s) | 144 |
| FaeI | CATG | 6 cut(s) | 109, 166, 504, 513, 594, 709 |
| FaqI | GGGAC | 2 cut(s) | 237, 652 |
| FatI | CATG | 6 cut(s) | 105, 162, 500, 509, 590, 705 |
| FauI | CCCGC | 1 cut(s) | 404 |
| Fnu4HI | GCNGC | 3 cut(s) | 371, 528, 531 |
| FokI | GGATG | 3 cut(s) | 226, 427, 446 |
| Fsp4HI | GCNGC | 3 cut(s) | 371, 528, 531 |
| FspBI | CTAG | 2 cut(s) | 250, 520 |
| GluI | GCNGC | 3 cut(s) | 371, 528, 531 |
| GsaI | CCCAGC | 1 cut(s) | 370 |
| HaeIII | GGCC | 3 cut(s) | 240, 397, 421 |
| HgaI | GACGC | 1 cut(s) | 126 |
| Hin1II | CATG | 6 cut(s) | 109, 166, 504, 513, 594, 709 |
| HindIII | AAGCTT | 1 cut(s) | 167 |
| HinfI | GANTC | 1 cut(s) | 159 |
| HphI | GGTGA | 1 cut(s) | 213 |
| Hpy166II | GTNNAC | 1 cut(s) | 660 |
| Hpy188I | TCNGA | 1 cut(s) | 152 |
| Hpy188III | TCNNGA | 3 cut(s) | 27, 163, 544 |
| Hpy8I | GTNNAC | 1 cut(s) | 660 |
| HpyAV | CCTTC | 1 cut(s) | 588 |
| HpyCH4III | ACNGT | 2 cut(s) | 207, 315 |
| HpyCH4V | TGCA | 4 cut(s) | 105, 265, 389, 533 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 271, 697 |
| HpyF3I | CTNAG | 3 cut(s) | 52, 545, 632 |
| Hsp92II | CATG | 6 cut(s) | 109, 166, 504, 513, 594, 709 |
| LpnPI | CCDG | 8 cut(s) | 63, 90, 275, 364, 380, 509, 557, 655 |
| Lsp1109I | GCAGC | 2 cut(s) | 382, 517 |
| LweI | GCATC | 3 cut(s) | 204, 261, 432 |
| MaeI | CTAG | 2 cut(s) | 250, 520 |
| MaeIII | GTNAC | 4 cut(s) | 201, 375, 487, 586 |
| MboII | GAAGA | 5 cut(s) | 255, 340, 573, 619, 656 |
| MluCI | AATT | 5 cut(s) | 68, 83, 406, 449, 615 |
| MmeI | TCCRAC | 1 cut(s) | 494 |
| MnlI | CCTC | 5 cut(s) | 34, 37, 299, 550, 557 |
| MroXI | GAANNNNTTC | 1 cut(s) | 341 |
| MseI | TTAA | 2 cut(s) | 86, 209 |
| MspA1I | CMGCKG | 1 cut(s) | 373 |
| MspR9I | CCNGG | 1 cut(s) | 78 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| MvnI | CGCG | 2 cut(s) | 28, 137 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 271, 697 |
| NcoI | CCATGG | 1 cut(s) | 500 |
| NlaIII | CATG | 6 cut(s) | 109, 166, 504, 513, 594, 709 |
| NlaIV | GGNNCC | 1 cut(s) | 420 |
| NmuCI | GTSAC | 2 cut(s) | 201, 487 |
| NruI | TCGCGA | 1 cut(s) | 28 |
| NspI | RCATGY | 2 cut(s) | 513, 709 |
| PagI | TCATGA | 1 cut(s) | 162 |
| PciI | ACATGT | 1 cut(s) | 509 |
| PdmI | GAANNNNTTC | 1 cut(s) | 341 |
| PfeI | GAWTC | 1 cut(s) | 159 |
| PkrI | GCNGC | 3 cut(s) | 372, 529, 532 |
| PscI | ACATGT | 1 cut(s) | 509 |
| PsiI | TTATAA | 1 cut(s) | 712 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspFI | CCCAGC | 1 cut(s) | 366 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 1 cut(s) | 420 |
| PspPI | GGNCC | 2 cut(s) | 395, 419 |
| PstI | CTGCAG | 1 cut(s) | 267 |
| PstNI | CAGNNNCTG | 1 cut(s) | 373 |
| PvuII | CAGCTG | 1 cut(s) | 373 |
| RruI | TCGCGA | 1 cut(s) | 28 |
| SaqAI | TTAA | 2 cut(s) | 86, 209 |
| SatI | GCNGC | 3 cut(s) | 371, 528, 531 |
| Sau96I | GGNCC | 2 cut(s) | 395, 419 |
| ScrFI | CCNGG | 1 cut(s) | 78 |
| SetI | ASST | 8 cut(s) | 171, 251, 353, 375, 385, 474, 568, 693 |
| SfaNI | GCATC | 3 cut(s) | 204, 261, 432 |
| SfcI | CTRYAG | 1 cut(s) | 263 |
| Sse9I | AATT | 5 cut(s) | 68, 83, 406, 449, 615 |
| SsiI | CCGC | 3 cut(s) | 135, 411, 527 |
| SspI | AATATT | 1 cut(s) | 18 |
| SspMI | CTAG | 2 cut(s) | 250, 520 |
| StyD4I | CCNGG | 1 cut(s) | 76 |
| StyI | CCWWGG | 1 cut(s) | 500 |
| TaaI | ACNGT | 2 cut(s) | 207, 315 |
| TaqI | TCGA | 1 cut(s) | 687 |
| TasI | AATT | 5 cut(s) | 68, 83, 406, 449, 615 |
| TauI | GCSGC | 1 cut(s) | 530 |
| TfiI | GAWTC | 1 cut(s) | 159 |
| Tru1I | TTAA | 2 cut(s) | 86, 209 |
| Tru9I | TTAA | 2 cut(s) | 86, 209 |
| TscAI | CASTG | 2 cut(s) | 320, 408 |
| TseFI | GTSAC | 2 cut(s) | 201, 487 |
| TseI | GCWGC | 2 cut(s) | 370, 530 |
| Tsp45I | GTSAC | 2 cut(s) | 201, 487 |
| TspDTI | ATGAA | 5 cut(s) | 151, 179, 350, 607, 695 |
| TspRI | CASTG | 2 cut(s) | 320, 408 |
| XapI | RAATTY | 3 cut(s) | 68, 449, 615 |
| XceI | RCATGY | 2 cut(s) | 513, 709 |
| XmnI | GAANNNNTTC | 1 cut(s) | 341 |
| XspI | CTAG | 2 cut(s) | 250, 520 |