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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 168 |
| AccII | CGCG | 1 cut(s) | 261 |
| AciI | CCGC | 3 cut(s) | 166, 177, 248 |
| AclWI | GGATC | 1 cut(s) | 532 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AcyI | GRCGYC | 2 cut(s) | 411, 823 |
| AfaI | GTAC | 4 cut(s) | 287, 298, 351, 734 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 254, 279, 420, 819 |
| AgsI | TTSAA | 3 cut(s) | 37, 742, 775 |
| AjnI | CCWGG | 2 cut(s) | 314, 472 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 381, 413 |
| AluBI | AGCT | 6 cut(s) | 11, 137, 380, 559, 571, 780 |
| AluI | AGCT | 6 cut(s) | 11, 137, 380, 559, 571, 780 |
| Alw26I | GTCTC | 1 cut(s) | 830 |
| AlwI | GGATC | 1 cut(s) | 532 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 283 |
| Ama87I | CYCGRG | 1 cut(s) | 254 |
| AoxI | GGCC | 1 cut(s) | 358 |
| ApeKI | GCWGC | 3 cut(s) | 113, 250, 646 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 355, 387 |
| AspLEI | GCGC | 2 cut(s) | 113, 261 |
| AspS9I | GGNCC | 4 cut(s) | 23, 66, 358, 423 |
| AsuHPI | GGTGA | 3 cut(s) | 538, 611, 773 |
| AvaI | CYCGRG | 1 cut(s) | 254 |
| AvaII | GGWCC | 3 cut(s) | 23, 66, 423 |
| BbvCI | CCTCAGC | 1 cut(s) | 522 |
| BbvI | GCAGC | 3 cut(s) | 125, 237, 633 |
| BccI | CCATC | 2 cut(s) | 238, 715 |
| BceAI | ACGGC | 1 cut(s) | 836 |
| BciT130I | CCWGG | 2 cut(s) | 316, 474 |
| BcoDI | GTCTC | 1 cut(s) | 830 |
| BisI | GCNGC | 3 cut(s) | 114, 251, 647 |
| BlsI | GCNGC | 3 cut(s) | 115, 252, 648 |
| Bme1390I | CCNGG | 2 cut(s) | 316, 474 |
| Bme18I | GGWCC | 3 cut(s) | 23, 66, 423 |
| BmeT110I | CYCGRG | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 4 cut(s) | 23, 66, 358, 423 |
| BmiI | GGNNCC | 3 cut(s) | 25, 68, 271 |
| BmrFI | CCNGG | 2 cut(s) | 316, 474 |
| BmsI | GCATC | 2 cut(s) | 420, 793 |
| BpmI | CTGGAG | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 522 |
| BsaBI | GATNNNNATC | 1 cut(s) | 807 |
| BsaHI | GRCGYC | 2 cut(s) | 411, 823 |
| BsaJI | CCNNGG | 2 cut(s) | 473, 757 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 254, 279, 420, 819 |
| Bse1I | ACTGG | 2 cut(s) | 277, 307 |
| Bse3DI | GCAATG | 1 cut(s) | 14 |
| Bse8I | GATNNNNATC | 1 cut(s) | 807 |
| BseBI | CCWGG | 2 cut(s) | 316, 474 |
| BseDI | CCNNGG | 2 cut(s) | 473, 757 |
| BseGI | GGATG | 1 cut(s) | 540 |
| BseJI | GATNNNNATC | 1 cut(s) | 807 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 254, 279, 420, 819 |
| BseMI | GCAATG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 513 |
| BseNI | ACTGG | 2 cut(s) | 277, 307 |
| BseRI | GAGGAG | 4 cut(s) | 160, 163, 197, 470 |
| BseXI | GCAGC | 3 cut(s) | 125, 237, 633 |
| BsgI | GTGCAG | 1 cut(s) | 695 |
| Bsh1236I | CGCG | 1 cut(s) | 261 |
| BshFI | GGCC | 1 cut(s) | 360 |
| BsiHKCI | CYCGRG | 1 cut(s) | 254 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 254, 279, 420, 819 |
| BsmAI | GTCTC | 1 cut(s) | 830 |
| BsmBI | CGTCTC | 1 cut(s) | 830 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 360 |
| BsoBI | CYCGRG | 1 cut(s) | 254 |
| Bsp1407I | TGTACA | 1 cut(s) | 285 |
| Bsp143I | GATC | 1 cut(s) | 537 |
| BspACI | CCGC | 3 cut(s) | 166, 177, 248 |
| BspANI | GGCC | 1 cut(s) | 360 |
| BspCNI | CTCAG | 1 cut(s) | 514 |
| BspFNI | CGCG | 1 cut(s) | 261 |
| BspLI | GGNNCC | 3 cut(s) | 25, 68, 271 |
| BspPI | GGATC | 1 cut(s) | 532 |
| BspQI | GCTCTTC | 1 cut(s) | 182 |
| BsrBI | CCGCTC | 1 cut(s) | 168 |
| BsrDI | GCAATG | 1 cut(s) | 14 |
| BsrGI | TGTACA | 1 cut(s) | 285 |
| BsrI | ACTGG | 2 cut(s) | 277, 307 |
| BssECI | CCNNGG | 2 cut(s) | 473, 757 |
| BssMI | GATC | 1 cut(s) | 537 |
| BssNI | GRCGYC | 2 cut(s) | 411, 823 |
| BssT1I | CCWWGG | 1 cut(s) | 757 |
| Bst2UI | CCWGG | 2 cut(s) | 316, 474 |
| Bst4CI | ACNGT | 3 cut(s) | 354, 427, 449 |
| Bst6I | CTCTTC | 2 cut(s) | 182, 226 |
| BstACI | GRCGYC | 2 cut(s) | 411, 823 |
| BstAUI | TGTACA | 1 cut(s) | 285 |
| BstC8I | GCNNGC | 2 cut(s) | 326, 492 |
| BstDEI | CTNAG | 2 cut(s) | 501, 522 |
| BstF5I | GGATG | 1 cut(s) | 540 |
| BstFNI | CGCG | 1 cut(s) | 261 |
| BstHHI | GCGC | 2 cut(s) | 113, 261 |
| BstKTI | GATC | 1 cut(s) | 540 |
| BstMAI | GTCTC | 1 cut(s) | 830 |
| BstMBI | GATC | 1 cut(s) | 537 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 256, 487, 506 |
| BstNI | CCWGG | 2 cut(s) | 316, 474 |
| BstSCI | CCNGG | 2 cut(s) | 314, 472 |
| BstUI | CGCG | 1 cut(s) | 261 |
| BstV1I | GCAGC | 3 cut(s) | 125, 237, 633 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 39, 63 |
| BsuRI | GGCC | 1 cut(s) | 360 |
| BtgZI | GCGATG | 1 cut(s) | 456 |
| BtsCI | GGATG | 1 cut(s) | 540 |
| BtsI | GCAGTG | 1 cut(s) | 606 |
| BtsIMutI | CAGTG | 3 cut(s) | 284, 606, 651 |
| Cac8I | GCNNGC | 2 cut(s) | 326, 492 |
| CaiI | CAGNNNCTG | 1 cut(s) | 283 |
| CfoI | GCGC | 2 cut(s) | 113, 261 |
| Cfr13I | GGNCC | 4 cut(s) | 23, 66, 358, 423 |
| CseI | GACGC | 3 cut(s) | 359, 419, 812 |
| Csp6I | GTAC | 4 cut(s) | 286, 297, 350, 733 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 182, 217 |
| CviAII | CATG | 3 cut(s) | 71, 289, 814 |
| CviQI | GTAC | 4 cut(s) | 286, 297, 350, 733 |
| DdeI | CTNAG | 2 cut(s) | 501, 522 |
| DpnI | GATC | 1 cut(s) | 539 |
| DpnII | GATC | 1 cut(s) | 537 |
| Eam1104I | CTCTTC | 2 cut(s) | 182, 226 |
| EarI | CTCTTC | 2 cut(s) | 182, 226 |
| Eco130I | CCWWGG | 1 cut(s) | 757 |
| Eco47I | GGWCC | 3 cut(s) | 23, 66, 423 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco88I | CYCGRG | 1 cut(s) | 254 |
| EcoRII | CCWGG | 2 cut(s) | 314, 472 |
| EcoT14I | CCWWGG | 1 cut(s) | 757 |
| EcoT22I | ATGCAT | 1 cut(s) | 808 |
| ErhI | CCWWGG | 1 cut(s) | 757 |
| Esp3I | CGTCTC | 1 cut(s) | 830 |
| FaeI | CATG | 3 cut(s) | 74, 292, 817 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 3 cut(s) | 70, 288, 813 |
| Fnu4HI | GCNGC | 3 cut(s) | 114, 251, 647 |
| FokI | GGATG | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 3 cut(s) | 114, 251, 647 |
| GlaI | GCGC | 2 cut(s) | 112, 260 |
| GluI | GCNGC | 3 cut(s) | 114, 251, 647 |
| GsuI | CTGGAG | 1 cut(s) | 260 |
| HaeIII | GGCC | 1 cut(s) | 360 |
| HgaI | GACGC | 3 cut(s) | 359, 419, 812 |
| HhaI | GCGC | 2 cut(s) | 113, 261 |
| Hin1I | GRCGYC | 2 cut(s) | 411, 823 |
| Hin1II | CATG | 3 cut(s) | 74, 292, 817 |
| Hin6I | GCGC | 2 cut(s) | 111, 259 |
| HinP1I | GCGC | 2 cut(s) | 111, 259 |
| HindIII | AAGCTT | 2 cut(s) | 378, 569 |
| HphI | GGTGA | 3 cut(s) | 538, 611, 773 |
| Hpy166II | GTNNAC | 2 cut(s) | 90, 350 |
| Hpy188I | TCNGA | 2 cut(s) | 23, 402 |
| Hpy8I | GTNNAC | 2 cut(s) | 90, 350 |
| Hpy99I | CGWCG | 2 cut(s) | 375, 413 |
| HpyAV | CCTTC | 2 cut(s) | 499, 613 |
| HpyCH4III | ACNGT | 3 cut(s) | 354, 427, 449 |
| HpyCH4V | TGCA | 2 cut(s) | 712, 806 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 256, 487, 506 |
| HpyF3I | CTNAG | 2 cut(s) | 501, 522 |
| Hsp92I | GRCGYC | 2 cut(s) | 411, 823 |
| Hsp92II | CATG | 3 cut(s) | 74, 292, 817 |
| HspAI | GCGC | 2 cut(s) | 111, 259 |
| Kzo9I | GATC | 1 cut(s) | 537 |
| LguI | GCTCTTC | 1 cut(s) | 182 |
| LmnI | GCTCC | 2 cut(s) | 173, 457 |
| Lsp1109I | GCAGC | 3 cut(s) | 125, 237, 633 |
| LweI | GCATC | 2 cut(s) | 420, 793 |
| MaeIII | GTNAC | 2 cut(s) | 579, 784 |
| MalI | GATC | 1 cut(s) | 539 |
| MbiI | CCGCTC | 1 cut(s) | 168 |
| MboI | GATC | 1 cut(s) | 537 |
| MboII | GAAGA | 7 cut(s) | 55, 198, 199, 213, 231, 234, 745 |
| MfeI | CAATTG | 2 cut(s) | 57, 99 |
| MluCI | AATT | 7 cut(s) | 57, 99, 140, 329, 584, 768, 835 |
| MmeI | TCCRAC | 1 cut(s) | 776 |
| MnlI | CCTC | 8 cut(s) | 61, 90, 175, 181, 184, 284, 448, 517 |
| Mph1103I | ATGCAT | 1 cut(s) | 808 |
| MseI | TTAA | 3 cut(s) | 123, 150, 834 |
| MslI | CAYNNNNRTG | 1 cut(s) | 37 |
| MspA1I | CMGCKG | 1 cut(s) | 250 |
| MspR9I | CCNGG | 2 cut(s) | 316, 474 |
| MunI | CAATTG | 2 cut(s) | 57, 99 |
| MvaI | CCWGG | 2 cut(s) | 316, 474 |
| MvnI | CGCG | 1 cut(s) | 261 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 256, 487, 506 |
| NdeII | GATC | 1 cut(s) | 537 |
| NlaIII | CATG | 3 cut(s) | 74, 292, 817 |
| NlaIV | GGNNCC | 3 cut(s) | 25, 68, 271 |
| NsiI | ATGCAT | 1 cut(s) | 808 |
| PciSI | GCTCTTC | 1 cut(s) | 182 |
| PkrI | GCNGC | 3 cut(s) | 115, 252, 648 |
| Psp6I | CCWGG | 2 cut(s) | 314, 472 |
| PspGI | CCWGG | 2 cut(s) | 314, 472 |
| PspN4I | GGNNCC | 3 cut(s) | 25, 68, 271 |
| PspPI | GGNCC | 4 cut(s) | 23, 66, 358, 423 |
| PstNI | CAGNNNCTG | 1 cut(s) | 283 |
| RsaI | GTAC | 4 cut(s) | 287, 298, 351, 734 |
| RsaNI | GTAC | 4 cut(s) | 286, 297, 350, 733 |
| RseI | CAYNNNNRTG | 1 cut(s) | 37 |
| SapI | GCTCTTC | 1 cut(s) | 182 |
| SaqAI | TTAA | 3 cut(s) | 123, 150, 834 |
| SatI | GCNGC | 3 cut(s) | 114, 251, 647 |
| Sau3AI | GATC | 1 cut(s) | 537 |
| Sau96I | GGNCC | 4 cut(s) | 23, 66, 358, 423 |
| ScrFI | CCNGG | 2 cut(s) | 316, 474 |
| SfaNI | GCATC | 2 cut(s) | 420, 793 |
| SinI | GGWCC | 3 cut(s) | 23, 66, 423 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 37 |
| Sse9I | AATT | 7 cut(s) | 57, 99, 140, 329, 584, 768, 835 |
| SsiI | CCGC | 3 cut(s) | 166, 177, 248 |
| StyD4I | CCNGG | 2 cut(s) | 314, 472 |
| StyI | CCWWGG | 1 cut(s) | 757 |
| TaaI | ACNGT | 3 cut(s) | 354, 427, 449 |
| TaqI | TCGA | 1 cut(s) | 408 |
| TasI | AATT | 7 cut(s) | 57, 99, 140, 329, 584, 768, 835 |
| TatI | WGTACW | 3 cut(s) | 285, 296, 732 |
| Tru1I | TTAA | 3 cut(s) | 123, 150, 834 |
| Tru9I | TTAA | 3 cut(s) | 123, 150, 834 |
| TscAI | CASTG | 3 cut(s) | 284, 613, 658 |
| TseI | GCWGC | 3 cut(s) | 113, 250, 646 |
| TspDTI | ATGAA | 3 cut(s) | 198, 581, 672 |
| TspGWI | ACGGA | 1 cut(s) | 547 |
| TspRI | CASTG | 3 cut(s) | 284, 613, 658 |
| VpaK11BI | GGWCC | 3 cut(s) | 23, 66, 423 |
| XapI | RAATTY | 1 cut(s) | 140 |
| Zsp2I | ATGCAT | 1 cut(s) | 808 |