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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 781 |
| Acc36I | ACCTGC | 1 cut(s) | 404 |
| AciI | CCGC | 4 cut(s) | 35, 284, 479, 671 |
| AcoI | YGGCCR | 2 cut(s) | 3, 457 |
| AcuI | CTGAAG | 4 cut(s) | 237, 309, 333, 561 |
| AcyI | GRCGYC | 1 cut(s) | 490 |
| AfaI | GTAC | 1 cut(s) | 441 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 47 |
| AgsI | TTSAA | 6 cut(s) | 19, 167, 368, 422, 635, 656 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 167, 199, 627, 659 |
| AluBI | AGCT | 2 cut(s) | 236, 311 |
| AluI | AGCT | 2 cut(s) | 236, 311 |
| Alw26I | GTCTC | 2 cut(s) | 136, 497 |
| AoxI | GGCC | 2 cut(s) | 3, 457 |
| ApeKI | GCWGC | 1 cut(s) | 638 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 538, 570 |
| AspLEI | GCGC | 1 cut(s) | 583 |
| AspS9I | GGNCC | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| AvaII | GGWCC | 1 cut(s) | 38 |
| BalI | TGGCCA | 2 cut(s) | 5, 459 |
| BbsI | GAAGAC | 1 cut(s) | 605 |
| BbvI | GCAGC | 1 cut(s) | 650 |
| BccI | CCATC | 1 cut(s) | 559 |
| BciVI | GTATCC | 1 cut(s) | 86 |
| BcoDI | GTCTC | 2 cut(s) | 136, 497 |
| BfaI | CTAG | 2 cut(s) | 360, 746 |
| BfuAI | ACCTGC | 1 cut(s) | 404 |
| BfuI | GTATCC | 1 cut(s) | 86 |
| BisI | GCNGC | 3 cut(s) | 285, 480, 639 |
| BlsI | GCNGC | 3 cut(s) | 286, 481, 640 |
| Bme18I | GGWCC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 1 cut(s) | 38 |
| BmiI | GGNNCC | 1 cut(s) | 39 |
| BmsI | GCATC | 2 cut(s) | 344, 685 |
| BpiI | GAAGAC | 1 cut(s) | 605 |
| BpuEI | CTTGAG | 1 cut(s) | 479 |
| BsaAI | YACGTR | 1 cut(s) | 773 |
| BsaBI | GATNNNNATC | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 1 cut(s) | 490 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 179, 209, 519, 549, 560, 590 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 47 |
| Bse1I | ACTGG | 1 cut(s) | 52 |
| Bse3DI | GCAATG | 1 cut(s) | 705 |
| Bse8I | GATNNNNATC | 1 cut(s) | 260 |
| BseGI | GGATG | 2 cut(s) | 196, 565 |
| BseJI | GATNNNNATC | 1 cut(s) | 260 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 47 |
| BseMI | GCAATG | 1 cut(s) | 705 |
| BseNI | ACTGG | 1 cut(s) | 52 |
| BseRI | GAGGAG | 1 cut(s) | 185 |
| BseXI | GCAGC | 1 cut(s) | 650 |
| Bsh1285I | CGRYCG | 1 cut(s) | 264 |
| BshFI | GGCC | 2 cut(s) | 5, 459 |
| BsiEI | CGRYCG | 1 cut(s) | 264 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 47 |
| BsmAI | GTCTC | 2 cut(s) | 136, 497 |
| BsmBI | CGTCTC | 1 cut(s) | 497 |
| BsnI | GGCC | 2 cut(s) | 5, 459 |
| Bsp143I | GATC | 2 cut(s) | 261, 484 |
| BspACI | CCGC | 4 cut(s) | 35, 284, 479, 671 |
| BspANI | GGCC | 2 cut(s) | 5, 459 |
| BspLI | GGNNCC | 1 cut(s) | 39 |
| BspMI | ACCTGC | 1 cut(s) | 404 |
| BsrDI | GCAATG | 1 cut(s) | 705 |
| BsrI | ACTGG | 1 cut(s) | 52 |
| BssMI | GATC | 2 cut(s) | 261, 484 |
| BssNI | GRCGYC | 1 cut(s) | 490 |
| Bst4CI | ACNGT | 1 cut(s) | 418 |
| Bst6I | CTCTTC | 7 cut(s) | 46, 162, 213, 237, 261, 285, 309 |
| BstACI | GRCGYC | 1 cut(s) | 490 |
| BstBAI | YACGTR | 1 cut(s) | 773 |
| BstF5I | GGATG | 2 cut(s) | 196, 565 |
| BstHHI | GCGC | 1 cut(s) | 583 |
| BstKTI | GATC | 2 cut(s) | 264, 487 |
| BstMAI | GTCTC | 2 cut(s) | 136, 497 |
| BstMBI | GATC | 2 cut(s) | 261, 484 |
| BstMCI | CGRYCG | 1 cut(s) | 264 |
| BstNSI | RCATGY | 2 cut(s) | 479, 692 |
| BstV1I | GCAGC | 1 cut(s) | 650 |
| BstV2I | GAAGAC | 1 cut(s) | 605 |
| BsuI | GTATCC | 1 cut(s) | 86 |
| BsuRI | GGCC | 2 cut(s) | 5, 459 |
| BtsCI | GGATG | 2 cut(s) | 196, 565 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 414 |
| BveI | ACCTGC | 1 cut(s) | 404 |
| CfoI | GCGC | 1 cut(s) | 583 |
| Cfr13I | GGNCC | 1 cut(s) | 38 |
| CseI | GACGC | 1 cut(s) | 479 |
| Csp6I | GTAC | 1 cut(s) | 440 |
| CviAII | CATG | 3 cut(s) | 401, 476, 689 |
| CviJI | RGCY | 5 cut(s) | 5, 236, 287, 311, 459 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 236, 287, 311, 459 |
| CviQI | GTAC | 1 cut(s) | 440 |
| DpnI | GATC | 2 cut(s) | 263, 486 |
| DpnII | GATC | 2 cut(s) | 261, 484 |
| DraI | TTTAAA | 1 cut(s) | 606 |
| EaeI | YGGCCR | 2 cut(s) | 3, 457 |
| Eam1104I | CTCTTC | 7 cut(s) | 46, 162, 213, 237, 261, 285, 309 |
| EarI | CTCTTC | 7 cut(s) | 46, 162, 213, 237, 261, 285, 309 |
| Eco47I | GGWCC | 1 cut(s) | 38 |
| Eco57I | CTGAAG | 4 cut(s) | 237, 309, 333, 561 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| Esp3I | CGTCTC | 1 cut(s) | 497 |
| FaeI | CATG | 3 cut(s) | 404, 479, 692 |
| FaiI | YATR | 9 cut(s) | 75, 211, 213, 305, 402, 477, 690, 766, 781 |
| FatI | CATG | 3 cut(s) | 400, 475, 688 |
| FauI | CCCGC | 2 cut(s) | 28, 664 |
| Fnu4HI | GCNGC | 3 cut(s) | 285, 480, 639 |
| FokI | GGATG | 2 cut(s) | 203, 572 |
| Fsp4HI | GCNGC | 3 cut(s) | 285, 480, 639 |
| FspBI | CTAG | 2 cut(s) | 360, 746 |
| GlaI | GCGC | 1 cut(s) | 582 |
| GluI | GCNGC | 3 cut(s) | 285, 480, 639 |
| HaeIII | GGCC | 2 cut(s) | 5, 459 |
| HgaI | GACGC | 1 cut(s) | 479 |
| HhaI | GCGC | 1 cut(s) | 583 |
| Hin1I | GRCGYC | 1 cut(s) | 490 |
| Hin1II | CATG | 3 cut(s) | 404, 479, 692 |
| Hin6I | GCGC | 1 cut(s) | 581 |
| HinP1I | GCGC | 1 cut(s) | 581 |
| HinfI | GANTC | 3 cut(s) | 134, 679, 725 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 473 |
| Hpy188I | TCNGA | 2 cut(s) | 340, 541 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 496 |
| Hpy8I | GTNNAC | 1 cut(s) | 473 |
| HpyAV | CCTTC | 1 cut(s) | 419 |
| HpyCH4III | ACNGT | 1 cut(s) | 418 |
| HpyCH4IV | ACGT | 1 cut(s) | 772 |
| HpyCH4V | TGCA | 3 cut(s) | 688, 698, 776 |
| HpySE526I | ACGT | 1 cut(s) | 772 |
| Hsp92I | GRCGYC | 1 cut(s) | 490 |
| Hsp92II | CATG | 3 cut(s) | 404, 479, 692 |
| HspAI | GCGC | 1 cut(s) | 581 |
| Kzo9I | GATC | 2 cut(s) | 261, 484 |
| LmnI | GCTCC | 1 cut(s) | 527 |
| LpnPI | CCDG | 6 cut(s) | 24, 33, 54, 402, 409, 441 |
| Lsp1109I | GCAGC | 1 cut(s) | 650 |
| LweI | GCATC | 2 cut(s) | 344, 685 |
| MaeI | CTAG | 2 cut(s) | 360, 746 |
| MaeII | ACGT | 1 cut(s) | 772 |
| MaeIII | GTNAC | 5 cut(s) | 43, 391, 514, 544, 709 |
| MalI | GATC | 2 cut(s) | 263, 486 |
| MboI | GATC | 2 cut(s) | 261, 484 |
| MfeI | CAATTG | 2 cut(s) | 371, 642 |
| MlsI | TGGCCA | 2 cut(s) | 5, 459 |
| MluCI | AATT | 2 cut(s) | 371, 642 |
| MluNI | TGGCCA | 2 cut(s) | 5, 459 |
| MlyI | GAGTC | 1 cut(s) | 143 |
| MmeI | TCCRAC | 2 cut(s) | 165, 645 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 459 |
| MscI | TGGCCA | 2 cut(s) | 5, 459 |
| MseI | TTAA | 2 cut(s) | 129, 605 |
| MslI | CAYNNNNRTG | 1 cut(s) | 693 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 459 |
| MspA1I | CMGCKG | 1 cut(s) | 311 |
| MunI | CAATTG | 2 cut(s) | 371, 642 |
| NdeII | GATC | 2 cut(s) | 261, 484 |
| NlaIII | CATG | 3 cut(s) | 404, 479, 692 |
| NlaIV | GGNNCC | 1 cut(s) | 39 |
| NmuCI | GTSAC | 3 cut(s) | 43, 514, 544 |
| NspI | RCATGY | 2 cut(s) | 479, 692 |
| PfeI | GAWTC | 2 cut(s) | 679, 725 |
| PkrI | GCNGC | 3 cut(s) | 286, 481, 640 |
| Ple19I | CGATCG | 1 cut(s) | 264 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| Ppu21I | YACGTR | 1 cut(s) | 773 |
| PpuMI | RGGWCCY | 1 cut(s) | 38 |
| PsiI | TTATAA | 1 cut(s) | 781 |
| Psp5II | RGGWCCY | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 1 cut(s) | 39 |
| PspPI | GGNCC | 1 cut(s) | 38 |
| PspPPI | RGGWCCY | 1 cut(s) | 38 |
| PvuI | CGATCG | 1 cut(s) | 264 |
| PvuII | CAGCTG | 1 cut(s) | 311 |
| RsaI | GTAC | 1 cut(s) | 441 |
| RsaNI | GTAC | 1 cut(s) | 440 |
| RseI | CAYNNNNRTG | 1 cut(s) | 693 |
| SaqAI | TTAA | 2 cut(s) | 129, 605 |
| SatI | GCNGC | 3 cut(s) | 285, 480, 639 |
| Sau3AI | GATC | 2 cut(s) | 261, 484 |
| Sau96I | GGNCC | 1 cut(s) | 38 |
| SchI | GAGTC | 1 cut(s) | 143 |
| SetI | ASST | 9 cut(s) | 24, 105, 238, 313, 398, 408, 612, 765, 775 |
| SfaNI | GCATC | 2 cut(s) | 344, 685 |
| SinI | GGWCC | 1 cut(s) | 38 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 693 |
| SmlI | CTYRAG | 1 cut(s) | 494 |
| SmoI | CTYRAG | 1 cut(s) | 494 |
| Sse9I | AATT | 2 cut(s) | 371, 642 |
| SsiI | CCGC | 4 cut(s) | 35, 284, 479, 671 |
| SspMI | CTAG | 2 cut(s) | 360, 746 |
| TaaI | ACNGT | 1 cut(s) | 418 |
| TaiI | ACGT | 1 cut(s) | 775 |
| TaqI | TCGA | 2 cut(s) | 240, 264 |
| TasI | AATT | 2 cut(s) | 371, 642 |
| TatI | WGTACW | 1 cut(s) | 439 |
| TauI | GCSGC | 2 cut(s) | 287, 482 |
| TfiI | GAWTC | 2 cut(s) | 679, 725 |
| Tru1I | TTAA | 2 cut(s) | 129, 605 |
| Tru9I | TTAA | 2 cut(s) | 129, 605 |
| TscAI | CASTG | 2 cut(s) | 52, 421 |
| TseFI | GTSAC | 3 cut(s) | 43, 514, 544 |
| TseI | GCWGC | 1 cut(s) | 638 |
| Tsp45I | GTSAC | 3 cut(s) | 43, 514, 544 |
| TspDTI | ATGAA | 2 cut(s) | 675, 716 |
| TspRI | CASTG | 2 cut(s) | 52, 421 |
| VpaK11BI | GGWCC | 1 cut(s) | 38 |
| XceI | RCATGY | 2 cut(s) | 479, 692 |
| XspI | CTAG | 2 cut(s) | 360, 746 |