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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 380 |
| AcuI | CTGAAG | 1 cut(s) | 654 |
| AfaI | GTAC | 1 cut(s) | 764 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 146, 197, 565 |
| AflII | CTTAAG | 1 cut(s) | 299 |
| AgsI | TTSAA | 2 cut(s) | 500, 580 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 128, 160, 459, 491, 605, 611, 637, 643 |
| AluBI | AGCT | 7 cut(s) | 29, 35, 182, 392, 552, 649, 832 |
| AluI | AGCT | 7 cut(s) | 29, 35, 182, 392, 552, 649, 832 |
| Alw26I | GTCTC | 2 cut(s) | 256, 358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 493 |
| AoxI | GGCC | 2 cut(s) | 573, 597 |
| ApeKI | GCWGC | 3 cut(s) | 20, 182, 549 |
| AseI | ATTAAT | 2 cut(s) | 701, 705 |
| AsuHPI | GGTGA | 3 cut(s) | 110, 162, 495 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| BbvI | GCAGC | 3 cut(s) | 32, 169, 561 |
| BclI | TGATCA | 1 cut(s) | 778 |
| BcoDI | GTCTC | 2 cut(s) | 256, 358 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BfmI | CTRYAG | 1 cut(s) | 18 |
| BfrI | CTTAAG | 1 cut(s) | 299 |
| BisI | GCNGC | 3 cut(s) | 21, 183, 550 |
| BlsI | GCNGC | 3 cut(s) | 22, 184, 551 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 777 |
| BsaWI | WCCGGW | 1 cut(s) | 311 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 437, 467 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 146, 197, 565 |
| Bse1I | ACTGG | 3 cut(s) | 92, 512, 550 |
| Bse3DI | GCAATG | 2 cut(s) | 375, 685 |
| Bse8I | GATNNNNATC | 1 cut(s) | 777 |
| BseGI | GGATG | 1 cut(s) | 795 |
| BseJI | GATNNNNATC | 1 cut(s) | 777 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 146, 197, 565 |
| BseMI | GCAATG | 2 cut(s) | 375, 685 |
| BseMII | CTCAG | 1 cut(s) | 585 |
| BseNI | ACTGG | 3 cut(s) | 92, 512, 550 |
| BseRI | GAGGAG | 3 cut(s) | 398, 461, 725 |
| BseXI | GCAGC | 3 cut(s) | 32, 169, 561 |
| BsgI | GTGCAG | 1 cut(s) | 93 |
| BshFI | GGCC | 2 cut(s) | 575, 599 |
| BsiSI | CCGG | 1 cut(s) | 312 |
| BslFI | GGGAC | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 146, 197, 565 |
| BsmAI | GTCTC | 2 cut(s) | 256, 358 |
| BsmFI | GGGAC | 1 cut(s) | 413 |
| BsnI | GGCC | 2 cut(s) | 575, 599 |
| Bsp143I | GATC | 1 cut(s) | 778 |
| BspACI | CCGC | 1 cut(s) | 380 |
| BspANI | GGCC | 2 cut(s) | 575, 599 |
| BspCNI | CTCAG | 1 cut(s) | 586 |
| BspHI | TCATGA | 1 cut(s) | 781 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspMAI | CTGCAG | 1 cut(s) | 22 |
| BspTI | CTTAAG | 1 cut(s) | 299 |
| BsrDI | GCAATG | 2 cut(s) | 375, 685 |
| BsrI | ACTGG | 3 cut(s) | 92, 512, 550 |
| BssMI | GATC | 1 cut(s) | 778 |
| Bst6I | CTCTTC | 2 cut(s) | 62, 630 |
| BstAFI | CTTAAG | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 3 cut(s) | 320, 573, 685 |
| BstDEI | CTNAG | 3 cut(s) | 255, 393, 594 |
| BstF5I | GGATG | 1 cut(s) | 795 |
| BstKTI | GATC | 1 cut(s) | 781 |
| BstMAI | GTCTC | 2 cut(s) | 256, 358 |
| BstMBI | GATC | 1 cut(s) | 778 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 26, 638, 684 |
| BstNSI | RCATGY | 1 cut(s) | 125 |
| BstSFI | CTRYAG | 1 cut(s) | 18 |
| BstV1I | GCAGC | 3 cut(s) | 32, 169, 561 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BsuRI | GGCC | 2 cut(s) | 575, 599 |
| BtsCI | GGATG | 1 cut(s) | 795 |
| BtsI | GCAGTG | 2 cut(s) | 63, 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 63, 105, 519 |
| Cac8I | GCNNGC | 3 cut(s) | 320, 573, 685 |
| CaiI | CAGNNNCTG | 1 cut(s) | 493 |
| CciI | TCATGA | 1 cut(s) | 781 |
| Csp6I | GTAC | 1 cut(s) | 763 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 589, 624 |
| CviAII | CATG | 4 cut(s) | 122, 323, 439, 782 |
| CviQI | GTAC | 1 cut(s) | 763 |
| DdeI | CTNAG | 3 cut(s) | 255, 393, 594 |
| DpnI | GATC | 1 cut(s) | 780 |
| DpnII | GATC | 1 cut(s) | 778 |
| Eam1104I | CTCTTC | 2 cut(s) | 62, 630 |
| EarI | CTCTTC | 2 cut(s) | 62, 630 |
| Eco147I | AGGCCT | 1 cut(s) | 575 |
| Eco57I | CTGAAG | 1 cut(s) | 654 |
| FaeI | CATG | 4 cut(s) | 125, 326, 442, 785 |
| FaiI | YATR | 8 cut(s) | 38, 123, 164, 230, 324, 440, 761, 783 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FaqI | GGGAC | 1 cut(s) | 413 |
| FatI | CATG | 4 cut(s) | 121, 322, 438, 781 |
| FbaI | TGATCA | 1 cut(s) | 778 |
| Fnu4HI | GCNGC | 3 cut(s) | 21, 183, 550 |
| FokI | GGATG | 1 cut(s) | 782 |
| Fsp4HI | GCNGC | 3 cut(s) | 21, 183, 550 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GluI | GCNGC | 3 cut(s) | 21, 183, 550 |
| HaeIII | GGCC | 2 cut(s) | 575, 599 |
| HapII | CCGG | 1 cut(s) | 312 |
| Hin1II | CATG | 4 cut(s) | 125, 326, 442, 785 |
| HinfI | GANTC | 2 cut(s) | 467, 500 |
| HpaII | CCGG | 1 cut(s) | 312 |
| HphI | GGTGA | 3 cut(s) | 110, 162, 495 |
| Hpy166II | GTNNAC | 1 cut(s) | 295 |
| Hpy188I | TCNGA | 1 cut(s) | 589 |
| Hpy188III | TCNNGA | 2 cut(s) | 558, 782 |
| Hpy8I | GTNNAC | 1 cut(s) | 295 |
| HpyAV | CCTTC | 7 cut(s) | 46, 277, 321, 403, 421, 574, 709 |
| HpyCH4V | TGCA | 5 cut(s) | 20, 61, 110, 185, 542 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 26, 638, 684 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 393, 594 |
| Hsp92II | CATG | 4 cut(s) | 125, 326, 442, 785 |
| Ksp22I | TGATCA | 1 cut(s) | 778 |
| Kzo9I | GATC | 1 cut(s) | 778 |
| LmnI | GCTCC | 5 cut(s) | 10, 330, 568, 718, 829 |
| LpnPI | CCDG | 8 cut(s) | 105, 325, 354, 473, 479, 525, 531, 557 |
| Lsp1109I | GCAGC | 3 cut(s) | 32, 169, 561 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MaeIII | GTNAC | 2 cut(s) | 168, 514 |
| MalI | GATC | 1 cut(s) | 780 |
| MboI | GATC | 1 cut(s) | 778 |
| MboII | GAAGA | 5 cut(s) | 79, 113, 625, 628, 647 |
| MluCI | AATT | 5 cut(s) | 141, 420, 606, 702, 735 |
| MmeI | TCCRAC | 2 cut(s) | 258, 603 |
| MnlI | CCTC | 9 cut(s) | 319, 376, 439, 444, 450, 589, 631, 703, 747 |
| MseI | TTAA | 3 cut(s) | 300, 701, 705 |
| MspA1I | CMGCKG | 1 cut(s) | 552 |
| MspCI | CTTAAG | 1 cut(s) | 299 |
| MspI | CCGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 26, 638, 684 |
| NdeII | GATC | 1 cut(s) | 778 |
| NlaIII | CATG | 4 cut(s) | 125, 326, 442, 785 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 2 cut(s) | 168, 514 |
| NspI | RCATGY | 1 cut(s) | 125 |
| PacI | TTAATTAA | 1 cut(s) | 705 |
| PagI | TCATGA | 1 cut(s) | 781 |
| PceI | AGGCCT | 1 cut(s) | 575 |
| PfeI | GAWTC | 2 cut(s) | 467, 500 |
| PkrI | GCNGC | 3 cut(s) | 22, 184, 551 |
| PshBI | ATTAAT | 2 cut(s) | 701, 705 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PstI | CTGCAG | 1 cut(s) | 22 |
| PstNI | CAGNNNCTG | 1 cut(s) | 493 |
| PvuII | CAGCTG | 1 cut(s) | 552 |
| RsaI | GTAC | 1 cut(s) | 764 |
| RsaNI | GTAC | 1 cut(s) | 763 |
| SaqAI | TTAA | 3 cut(s) | 300, 701, 705 |
| SatI | GCNGC | 3 cut(s) | 21, 183, 550 |
| Sau3AI | GATC | 1 cut(s) | 778 |
| SfcI | CTRYAG | 1 cut(s) | 18 |
| SmlI | CTYRAG | 1 cut(s) | 299 |
| SmoI | CTYRAG | 1 cut(s) | 299 |
| Sse9I | AATT | 5 cut(s) | 141, 420, 606, 702, 735 |
| SseBI | AGGCCT | 1 cut(s) | 575 |
| SsiI | CCGC | 1 cut(s) | 380 |
| SspMI | CTAG | 1 cut(s) | 174 |
| StuI | AGGCCT | 1 cut(s) | 575 |
| TaqI | TCGA | 2 cut(s) | 86, 212 |
| TasI | AATT | 5 cut(s) | 141, 420, 606, 702, 735 |
| TfiI | GAWTC | 2 cut(s) | 467, 500 |
| Tru1I | TTAA | 3 cut(s) | 300, 701, 705 |
| Tru9I | TTAA | 3 cut(s) | 300, 701, 705 |
| TscAI | CASTG | 3 cut(s) | 63, 112, 519 |
| TseFI | GTSAC | 2 cut(s) | 168, 514 |
| TseI | GCWGC | 3 cut(s) | 20, 182, 549 |
| Tsp45I | GTSAC | 2 cut(s) | 168, 514 |
| TspDTI | ATGAA | 4 cut(s) | 65, 80, 179, 543 |
| TspRI | CASTG | 3 cut(s) | 63, 112, 519 |
| Vha464I | CTTAAG | 1 cut(s) | 299 |
| VspI | ATTAAT | 2 cut(s) | 701, 705 |
| XceI | RCATGY | 1 cut(s) | 125 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 286 |
| XspI | CTAG | 1 cut(s) | 174 |