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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 109 |
| AciI | CCGC | 1 cut(s) | 466 |
| AcsI | RAATTY | 2 cut(s) | 9, 443 |
| AcuI | CTGAAG | 2 cut(s) | 48, 167 |
| AcyI | GRCGYC | 1 cut(s) | 106 |
| AfaI | GTAC | 2 cut(s) | 31, 69 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 484 |
| AgsI | TTSAA | 3 cut(s) | 97, 123, 448 |
| AjnI | CCWGG | 1 cut(s) | 585 |
| AluBI | AGCT | 4 cut(s) | 128, 225, 257, 293 |
| AluI | AGCT | 4 cut(s) | 128, 225, 257, 293 |
| Alw26I | GTCTC | 1 cut(s) | 513 |
| AoxI | GGCC | 2 cut(s) | 84, 622 |
| ApoI | RAATTY | 2 cut(s) | 9, 443 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 74, 106 |
| AseI | ATTAAT | 1 cut(s) | 534 |
| AspS9I | GGNCC | 1 cut(s) | 622 |
| AsuII | TTCGAA | 1 cut(s) | 113 |
| BciT130I | CCWGG | 1 cut(s) | 587 |
| BcoDI | GTCTC | 1 cut(s) | 513 |
| Bme1390I | CCNGG | 1 cut(s) | 587 |
| BmgT120I | GGNCC | 1 cut(s) | 622 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BmrFI | CCNGG | 1 cut(s) | 587 |
| BmsI | GCATC | 1 cut(s) | 86 |
| Bpu14I | TTCGAA | 1 cut(s) | 113 |
| BsaHI | GRCGYC | 1 cut(s) | 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 484 |
| Bse1I | ACTGG | 1 cut(s) | 54 |
| BseBI | CCWGG | 1 cut(s) | 587 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 484 |
| BseMII | CTCAG | 1 cut(s) | 435 |
| BseNI | ACTGG | 1 cut(s) | 54 |
| BseRI | GAGGAG | 1 cut(s) | 205 |
| BshFI | GGCC | 2 cut(s) | 86, 624 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 484 |
| BsmAI | GTCTC | 1 cut(s) | 513 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsnI | GGCC | 2 cut(s) | 86, 624 |
| Bsp119I | TTCGAA | 1 cut(s) | 113 |
| Bsp143I | GATC | 2 cut(s) | 41, 501 |
| BspACI | CCGC | 1 cut(s) | 466 |
| BspANI | GGCC | 2 cut(s) | 86, 624 |
| BspCNI | CTCAG | 1 cut(s) | 434 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BspT104I | TTCGAA | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 54 |
| BssMI | GATC | 2 cut(s) | 41, 501 |
| BssNI | GRCGYC | 1 cut(s) | 106 |
| Bst2UI | CCWGG | 1 cut(s) | 587 |
| Bst4CI | ACNGT | 2 cut(s) | 74, 220 |
| BstACI | GRCGYC | 1 cut(s) | 106 |
| BstBI | TTCGAA | 1 cut(s) | 113 |
| BstC8I | GCNNGC | 1 cut(s) | 295 |
| BstDEI | CTNAG | 1 cut(s) | 421 |
| BstKTI | GATC | 2 cut(s) | 44, 504 |
| BstMAI | GTCTC | 1 cut(s) | 513 |
| BstMBI | GATC | 2 cut(s) | 41, 501 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 83 |
| BstNI | CCWGG | 1 cut(s) | 587 |
| BstSCI | CCNGG | 1 cut(s) | 585 |
| BsuRI | GGCC | 2 cut(s) | 86, 624 |
| Cac8I | GCNNGC | 1 cut(s) | 295 |
| Cfr13I | GGNCC | 1 cut(s) | 622 |
| CseI | GACGC | 1 cut(s) | 380 |
| Csp6I | GTAC | 2 cut(s) | 30, 68 |
| CviAII | CATG | 2 cut(s) | 324, 596 |
| CviJI | RGCY | 7 cut(s) | 62, 86, 128, 225, 257, 293, 624 |
| CviKI_1 | RGCY | 7 cut(s) | 62, 86, 128, 225, 257, 293, 624 |
| CviQI | GTAC | 2 cut(s) | 30, 68 |
| DdeI | CTNAG | 1 cut(s) | 421 |
| DpnI | GATC | 2 cut(s) | 43, 503 |
| DpnII | GATC | 2 cut(s) | 41, 501 |
| Eco147I | AGGCCT | 1 cut(s) | 86 |
| Eco57I | CTGAAG | 2 cut(s) | 48, 167 |
| EcoO109I | RGGNCCY | 1 cut(s) | 622 |
| EcoRI | GAATTC | 1 cut(s) | 443 |
| EcoRII | CCWGG | 1 cut(s) | 585 |
| FaeI | CATG | 2 cut(s) | 327, 599 |
| FaiI | YATR | 7 cut(s) | 176, 277, 279, 325, 348, 483, 597 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FatI | CATG | 2 cut(s) | 323, 595 |
| FauI | CCCGC | 1 cut(s) | 473 |
| HaeIII | GGCC | 2 cut(s) | 86, 624 |
| HgaI | GACGC | 1 cut(s) | 380 |
| Hin1I | GRCGYC | 1 cut(s) | 106 |
| Hin1II | CATG | 2 cut(s) | 327, 599 |
| HinfI | GANTC | 3 cut(s) | 316, 451, 506 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 70 |
| Hpy188I | TCNGA | 2 cut(s) | 134, 577 |
| Hpy188III | TCNNGA | 4 cut(s) | 313, 395, 448, 515 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 70 |
| Hpy99I | CGWCG | 2 cut(s) | 105, 108 |
| HpyAV | CCTTC | 4 cut(s) | 109, 134, 295, 359 |
| HpyCH4III | ACNGT | 2 cut(s) | 74, 220 |
| HpyCH4IV | ACGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 4 cut(s) | 77, 271, 308, 595 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 83 |
| HpyF3I | CTNAG | 1 cut(s) | 421 |
| HpySE526I | ACGT | 1 cut(s) | 106 |
| Hsp92I | GRCGYC | 1 cut(s) | 106 |
| Hsp92II | CATG | 2 cut(s) | 327, 599 |
| Kzo9I | GATC | 2 cut(s) | 41, 501 |
| LpnPI | CCDG | 9 cut(s) | 67, 243, 346, 408, 411, 507, 528, 572, 599 |
| LweI | GCATC | 1 cut(s) | 86 |
| MaeII | ACGT | 1 cut(s) | 106 |
| MaeIII | GTNAC | 1 cut(s) | 169 |
| MalI | GATC | 2 cut(s) | 43, 503 |
| MboI | GATC | 2 cut(s) | 41, 501 |
| MboII | GAAGA | 1 cut(s) | 223 |
| MluCI | AATT | 3 cut(s) | 9, 198, 443 |
| MlyI | GAGTC | 2 cut(s) | 460, 515 |
| MnlI | CCTC | 3 cut(s) | 155, 183, 511 |
| MseI | TTAA | 6 cut(s) | 156, 228, 338, 416, 534, 627 |
| MspR9I | CCNGG | 1 cut(s) | 587 |
| MvaI | CCWGG | 1 cut(s) | 587 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 83 |
| NdeII | GATC | 2 cut(s) | 41, 501 |
| NlaIII | CATG | 2 cut(s) | 327, 599 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NspV | TTCGAA | 1 cut(s) | 113 |
| PceI | AGGCCT | 1 cut(s) | 86 |
| PfeI | GAWTC | 1 cut(s) | 316 |
| PflFI | GACNNNGTC | 1 cut(s) | 105 |
| PfoI | TCCNGGA | 1 cut(s) | 585 |
| PleI | GAGTC | 2 cut(s) | 459, 514 |
| PpsI | GAGTC | 2 cut(s) | 459, 514 |
| PshBI | ATTAAT | 1 cut(s) | 534 |
| Psp6I | CCWGG | 1 cut(s) | 585 |
| PspGI | CCWGG | 1 cut(s) | 585 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| PspPI | GGNCC | 1 cut(s) | 622 |
| PsyI | GACNNNGTC | 1 cut(s) | 105 |
| RsaI | GTAC | 2 cut(s) | 31, 69 |
| RsaNI | GTAC | 2 cut(s) | 30, 68 |
| SaqAI | TTAA | 6 cut(s) | 156, 228, 338, 416, 534, 627 |
| Sau3AI | GATC | 2 cut(s) | 41, 501 |
| Sau96I | GGNCC | 1 cut(s) | 622 |
| SchI | GAGTC | 2 cut(s) | 460, 515 |
| ScrFI | CCNGG | 1 cut(s) | 587 |
| SetI | ASST | 8 cut(s) | 29, 109, 130, 227, 259, 295, 306, 572 |
| SfaNI | GCATC | 1 cut(s) | 86 |
| SfuI | TTCGAA | 1 cut(s) | 113 |
| Sse9I | AATT | 3 cut(s) | 9, 198, 443 |
| SseBI | AGGCCT | 1 cut(s) | 86 |
| SsiI | CCGC | 1 cut(s) | 466 |
| StuI | AGGCCT | 1 cut(s) | 86 |
| StyD4I | CCNGG | 1 cut(s) | 585 |
| TaaI | ACNGT | 2 cut(s) | 74, 220 |
| TaiI | ACGT | 1 cut(s) | 109 |
| TaqI | TCGA | 3 cut(s) | 113, 314, 504 |
| TasI | AATT | 3 cut(s) | 9, 198, 443 |
| TatI | WGTACW | 2 cut(s) | 29, 67 |
| TfiI | GAWTC | 1 cut(s) | 316 |
| Tru1I | TTAA | 6 cut(s) | 156, 228, 338, 416, 534, 627 |
| Tru9I | TTAA | 6 cut(s) | 156, 228, 338, 416, 534, 627 |
| TspDTI | ATGAA | 1 cut(s) | 520 |
| TspGWI | ACGGA | 1 cut(s) | 445 |
| Tth111I | GACNNNGTC | 1 cut(s) | 105 |
| VspI | ATTAAT | 1 cut(s) | 534 |
| XapI | RAATTY | 2 cut(s) | 9, 443 |
| ZraI | GACGTC | 1 cut(s) | 107 |