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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 365 |
| AccII | CGCG | 1 cut(s) | 480 |
| AccIII | TCCGGA | 1 cut(s) | 1052 |
| AciI | CCGC | 1 cut(s) | 811 |
| AcoI | YGGCCR | 1 cut(s) | 808 |
| AcsI | RAATTY | 3 cut(s) | 187, 801, 926 |
| AcuI | CTGAAG | 2 cut(s) | 216, 627 |
| AfaI | GTAC | 4 cut(s) | 291, 336, 456, 568 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 820 |
| AflIII | ACRYGT | 2 cut(s) | 478, 569 |
| AgsI | TTSAA | 5 cut(s) | 62, 142, 187, 416, 763 |
| AluBI | AGCT | 7 cut(s) | 114, 211, 591, 736, 827, 903, 1022 |
| AluI | AGCT | 7 cut(s) | 114, 211, 591, 736, 827, 903, 1022 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 380 |
| Aor13HI | TCCGGA | 1 cut(s) | 1052 |
| AoxI | GGCC | 5 cut(s) | 159, 293, 581, 747, 808 |
| ApeKI | GCWGC | 6 cut(s) | 111, 371, 517, 903, 937, 1058 |
| ApoI | RAATTY | 3 cut(s) | 187, 801, 926 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 338, 370, 1025, 1057 |
| AseI | ATTAAT | 1 cut(s) | 267 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AspLEI | GCGC | 1 cut(s) | 859 |
| AspS9I | GGNCC | 1 cut(s) | 747 |
| AsuHPI | GGTGA | 2 cut(s) | 57, 766 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 558, 591 |
| BanII | GRGCYC | 1 cut(s) | 1009 |
| BbvI | GCAGC | 5 cut(s) | 123, 383, 504, 890, 924 |
| BccI | CCATC | 1 cut(s) | 785 |
| BceAI | ACGGC | 1 cut(s) | 308 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 224, 258, 614, 648 |
| BclI | TGATCA | 1 cut(s) | 682 |
| BfaI | CTAG | 1 cut(s) | 585 |
| BfuAI | ACCTGC | 1 cut(s) | 365 |
| BisI | GCNGC | 7 cut(s) | 112, 372, 518, 811, 904, 938, 1059 |
| BlsI | GCNGC | 7 cut(s) | 113, 373, 519, 812, 905, 939, 1060 |
| BmgT120I | GGNCC | 1 cut(s) | 747 |
| BmsI | GCATC | 3 cut(s) | 547, 891, 924 |
| BsaBI | GATNNNNATC | 1 cut(s) | 681 |
| BsaJI | CCNNGG | 2 cut(s) | 448, 852 |
| BsaWI | WCCGGW | 2 cut(s) | 331, 1052 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 820 |
| Bse1I | ACTGG | 2 cut(s) | 74, 112 |
| Bse8I | GATNNNNATC | 1 cut(s) | 681 |
| BseAI | TCCGGA | 1 cut(s) | 1052 |
| BseDI | CCNNGG | 2 cut(s) | 448, 852 |
| BseGI | GGATG | 2 cut(s) | 699, 777 |
| BseJI | GATNNNNATC | 1 cut(s) | 681 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 820 |
| BseMII | CTCAG | 2 cut(s) | 147, 980 |
| BseNI | ACTGG | 2 cut(s) | 74, 112 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 5 cut(s) | 123, 383, 504, 890, 924 |
| BsgI | GTGCAG | 1 cut(s) | 923 |
| Bsh1236I | CGCG | 1 cut(s) | 480 |
| BshFI | GGCC | 5 cut(s) | 161, 295, 583, 749, 810 |
| BsiSI | CCGG | 2 cut(s) | 332, 1053 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 820 |
| BsmI | GAATGC | 1 cut(s) | 1048 |
| BsnI | GGCC | 5 cut(s) | 161, 295, 583, 749, 810 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1009 |
| Bsp13I | TCCGGA | 1 cut(s) | 1052 |
| Bsp143I | GATC | 1 cut(s) | 682 |
| Bsp19I | CCATGG | 2 cut(s) | 448, 852 |
| BspACI | CCGC | 1 cut(s) | 811 |
| BspANI | GGCC | 5 cut(s) | 161, 295, 583, 749, 810 |
| BspCNI | CTCAG | 2 cut(s) | 148, 979 |
| BspEI | TCCGGA | 1 cut(s) | 1052 |
| BspFNI | CGCG | 1 cut(s) | 480 |
| BspMI | ACCTGC | 1 cut(s) | 365 |
| BsrI | ACTGG | 2 cut(s) | 74, 112 |
| BssECI | CCNNGG | 2 cut(s) | 448, 852 |
| BssMI | GATC | 1 cut(s) | 682 |
| BssT1I | CCWWGG | 2 cut(s) | 448, 852 |
| Bst4CI | ACNGT | 5 cut(s) | 82, 239, 289, 308, 339 |
| Bst6I | CTCTTC | 2 cut(s) | 192, 832 |
| BstC8I | GCNNGC | 3 cut(s) | 135, 247, 977 |
| BstDEI | CTNAG | 2 cut(s) | 156, 966 |
| BstDSI | CCRYGG | 2 cut(s) | 448, 852 |
| BstEII | GGTNACC | 1 cut(s) | 772 |
| BstF5I | GGATG | 2 cut(s) | 699, 777 |
| BstFNI | CGCG | 1 cut(s) | 480 |
| BstHHI | GCGC | 1 cut(s) | 859 |
| BstKTI | GATC | 1 cut(s) | 685 |
| BstMBI | GATC | 1 cut(s) | 682 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1028 |
| BstNSI | RCATGY | 1 cut(s) | 573 |
| BstPI | GGTNACC | 1 cut(s) | 772 |
| BstUI | CGCG | 1 cut(s) | 480 |
| BstV1I | GCAGC | 5 cut(s) | 123, 383, 504, 890, 924 |
| BsuRI | GGCC | 5 cut(s) | 161, 295, 583, 749, 810 |
| BtgI | CCRYGG | 2 cut(s) | 448, 852 |
| BtsCI | GGATG | 2 cut(s) | 699, 777 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| BveI | ACCTGC | 1 cut(s) | 365 |
| Cac8I | GCNNGC | 3 cut(s) | 135, 247, 977 |
| CaiI | CAGNNNCTG | 1 cut(s) | 380 |
| CfoI | GCGC | 1 cut(s) | 859 |
| Cfr13I | GGNCC | 1 cut(s) | 747 |
| Csp6I | GTAC | 4 cut(s) | 290, 335, 455, 567 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 151, 186 |
| CviAII | CATG | 5 cut(s) | 449, 570, 853, 862, 943 |
| CviQI | GTAC | 4 cut(s) | 290, 335, 455, 567 |
| DdeI | CTNAG | 2 cut(s) | 156, 966 |
| DpnI | GATC | 1 cut(s) | 684 |
| DpnII | GATC | 1 cut(s) | 682 |
| DraI | TTTAAA | 1 cut(s) | 364 |
| EaeI | YGGCCR | 1 cut(s) | 808 |
| Eam1104I | CTCTTC | 2 cut(s) | 192, 832 |
| EarI | CTCTTC | 2 cut(s) | 192, 832 |
| Eco130I | CCWWGG | 2 cut(s) | 448, 852 |
| Eco24I | GRGCYC | 1 cut(s) | 1009 |
| Eco57I | CTGAAG | 2 cut(s) | 216, 627 |
| Eco91I | GGTNACC | 1 cut(s) | 772 |
| EcoO65I | GGTNACC | 1 cut(s) | 772 |
| EcoT14I | CCWWGG | 2 cut(s) | 448, 852 |
| EcoT38I | GRGCYC | 1 cut(s) | 1009 |
| ErhI | CCWWGG | 2 cut(s) | 448, 852 |
| FaeI | CATG | 5 cut(s) | 452, 573, 856, 865, 946 |
| FatI | CATG | 5 cut(s) | 448, 569, 852, 861, 942 |
| FbaI | TGATCA | 1 cut(s) | 682 |
| Fnu4HI | GCNGC | 7 cut(s) | 112, 372, 518, 811, 904, 938, 1059 |
| FokI | GGATG | 2 cut(s) | 686, 764 |
| FriOI | GRGCYC | 1 cut(s) | 1009 |
| Fsp4HI | GCNGC | 7 cut(s) | 112, 372, 518, 811, 904, 938, 1059 |
| FspBI | CTAG | 1 cut(s) | 585 |
| GlaI | GCGC | 1 cut(s) | 858 |
| GluI | GCNGC | 7 cut(s) | 112, 372, 518, 811, 904, 938, 1059 |
| HaeIII | GGCC | 5 cut(s) | 161, 295, 583, 749, 810 |
| HapII | CCGG | 2 cut(s) | 332, 1053 |
| HhaI | GCGC | 1 cut(s) | 859 |
| Hin1II | CATG | 5 cut(s) | 452, 573, 856, 865, 946 |
| Hin6I | GCGC | 1 cut(s) | 857 |
| HinP1I | GCGC | 1 cut(s) | 857 |
| HincII | GTYRAC | 1 cut(s) | 342 |
| HindII | GTYRAC | 1 cut(s) | 342 |
| HindIII | AAGCTT | 1 cut(s) | 589 |
| HinfI | GANTC | 3 cut(s) | 29, 62, 991 |
| HpaII | CCGG | 2 cut(s) | 332, 1053 |
| HphI | GGTGA | 2 cut(s) | 57, 766 |
| Hpy166II | GTNNAC | 2 cut(s) | 342, 455 |
| Hpy188I | TCNGA | 3 cut(s) | 151, 358, 969 |
| Hpy188III | TCNNGA | 4 cut(s) | 120, 643, 760, 1053 |
| Hpy8I | GTNNAC | 2 cut(s) | 342, 455 |
| HpyAV | CCTTC | 4 cut(s) | 136, 613, 859, 961 |
| HpyCH4III | ACNGT | 5 cut(s) | 82, 239, 289, 308, 339 |
| HpyCH4V | TGCA | 4 cut(s) | 104, 922, 940, 1031 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1028 |
| HpyF3I | CTNAG | 2 cut(s) | 156, 966 |
| Hsp92II | CATG | 5 cut(s) | 452, 573, 856, 865, 946 |
| HspAI | GCGC | 1 cut(s) | 857 |
| Kpn2I | TCCGGA | 1 cut(s) | 1052 |
| Ksp22I | TGATCA | 1 cut(s) | 682 |
| Kzo9I | GATC | 1 cut(s) | 682 |
| LmnI | GCTCC | 3 cut(s) | 130, 622, 1055 |
| Lsp1109I | GCAGC | 5 cut(s) | 123, 383, 504, 890, 924 |
| LweI | GCATC | 3 cut(s) | 547, 891, 924 |
| MaeI | CTAG | 1 cut(s) | 585 |
| MaeIII | GTNAC | 3 cut(s) | 76, 487, 772 |
| MalI | GATC | 1 cut(s) | 684 |
| MboI | GATC | 1 cut(s) | 682 |
| MboII | GAAGA | 5 cut(s) | 187, 190, 209, 775, 849 |
| MfeI | CAATTG | 1 cut(s) | 408 |
| MhlI | GDGCHC | 1 cut(s) | 1009 |
| MluCI | AATT | 8 cut(s) | 168, 187, 264, 314, 408, 787, 801, 926 |
| MluI | ACGCGT | 1 cut(s) | 478 |
| MmeI | TCCRAC | 1 cut(s) | 1019 |
| MroI | TCCGGA | 1 cut(s) | 1052 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MseI | TTAA | 3 cut(s) | 267, 363, 930 |
| MslI | CAYNNNNRTG | 2 cut(s) | 887, 890 |
| MspA1I | CMGCKG | 1 cut(s) | 114 |
| MspI | CCGG | 2 cut(s) | 332, 1053 |
| MssI | GTTTAAAC | 1 cut(s) | 364 |
| MunI | CAATTG | 1 cut(s) | 408 |
| Mva1269I | GAATGC | 1 cut(s) | 1048 |
| MvnI | CGCG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1028 |
| NcoI | CCATGG | 2 cut(s) | 448, 852 |
| NdeII | GATC | 1 cut(s) | 682 |
| NlaIII | CATG | 5 cut(s) | 452, 573, 856, 865, 946 |
| NmuCI | GTSAC | 2 cut(s) | 76, 772 |
| NspI | RCATGY | 1 cut(s) | 573 |
| PciI | ACATGT | 1 cut(s) | 569 |
| PctI | GAATGC | 1 cut(s) | 1048 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 3 cut(s) | 29, 62, 991 |
| PkrI | GCNGC | 7 cut(s) | 113, 373, 519, 812, 905, 939, 1060 |
| PmeI | GTTTAAAC | 1 cut(s) | 364 |
| PscI | ACATGT | 1 cut(s) | 569 |
| PshBI | ATTAAT | 1 cut(s) | 267 |
| PspEI | GGTNACC | 1 cut(s) | 772 |
| PspPI | GGNCC | 1 cut(s) | 747 |
| PstNI | CAGNNNCTG | 1 cut(s) | 380 |
| PvuII | CAGCTG | 1 cut(s) | 114 |
| RsaI | GTAC | 4 cut(s) | 291, 336, 456, 568 |
| RsaNI | GTAC | 4 cut(s) | 290, 335, 455, 567 |
| RseI | CAYNNNNRTG | 2 cut(s) | 887, 890 |
| SaqAI | TTAA | 3 cut(s) | 267, 363, 930 |
| SatI | GCNGC | 7 cut(s) | 112, 372, 518, 811, 904, 938, 1059 |
| Sau3AI | GATC | 1 cut(s) | 682 |
| Sau96I | GGNCC | 1 cut(s) | 747 |
| SduI | GDGCHC | 1 cut(s) | 1009 |
| SfaNI | GCATC | 3 cut(s) | 547, 891, 924 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 887, 890 |
| Sse9I | AATT | 8 cut(s) | 168, 187, 264, 314, 408, 787, 801, 926 |
| SsiI | CCGC | 1 cut(s) | 811 |
| SspMI | CTAG | 1 cut(s) | 585 |
| StyI | CCWWGG | 2 cut(s) | 448, 852 |
| TaaI | ACNGT | 5 cut(s) | 82, 239, 289, 308, 339 |
| TaqI | TCGA | 2 cut(s) | 234, 426 |
| TasI | AATT | 8 cut(s) | 168, 187, 264, 314, 408, 787, 801, 926 |
| TauI | GCSGC | 1 cut(s) | 813 |
| TfiI | GAWTC | 3 cut(s) | 29, 62, 991 |
| Tru1I | TTAA | 3 cut(s) | 267, 363, 930 |
| Tru9I | TTAA | 3 cut(s) | 267, 363, 930 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TseFI | GTSAC | 2 cut(s) | 76, 772 |
| TseI | GCWGC | 6 cut(s) | 111, 371, 517, 903, 937, 1058 |
| Tsp45I | GTSAC | 2 cut(s) | 76, 772 |
| TspDTI | ATGAA | 4 cut(s) | 105, 289, 878, 943 |
| TspRI | CASTG | 1 cut(s) | 81 |
| VspI | ATTAAT | 1 cut(s) | 267 |
| XapI | RAATTY | 3 cut(s) | 187, 801, 926 |
| XceI | RCATGY | 1 cut(s) | 573 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 1 cut(s) | 585 |