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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 596 |
| Acc36I | ACCTGC | 1 cut(s) | 668 |
| AccBSI | CCGCTC | 1 cut(s) | 629 |
| AciI | CCGC | 3 cut(s) | 476, 629, 634 |
| AcoI | YGGCCR | 1 cut(s) | 127 |
| AflII | CTTAAG | 1 cut(s) | 164 |
| AgsI | TTSAA | 7 cut(s) | 38, 212, 270, 299, 311, 570, 856 |
| AluBI | AGCT | 4 cut(s) | 522, 583, 791, 838 |
| AluI | AGCT | 4 cut(s) | 522, 583, 791, 838 |
| Alw21I | GWGCWC | 1 cut(s) | 840 |
| AoxI | GGCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 4 cut(s) | 170, 244, 302, 530 |
| AspS9I | GGNCC | 1 cut(s) | 631 |
| AsuC2I | CCSGG | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 1 cut(s) | 376 |
| AvaII | GGWCC | 1 cut(s) | 631 |
| BalI | TGGCCA | 1 cut(s) | 129 |
| BanII | GRGCYC | 2 cut(s) | 608, 840 |
| BbsI | GAAGAC | 1 cut(s) | 269 |
| Bbv12I | GWGCWC | 1 cut(s) | 840 |
| BbvI | GCAGC | 4 cut(s) | 157, 231, 314, 517 |
| BccI | CCATC | 4 cut(s) | 194, 223, 353, 694 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcnI | CCSGG | 1 cut(s) | 337 |
| BfaI | CTAG | 1 cut(s) | 30 |
| BfrI | CTTAAG | 1 cut(s) | 164 |
| BfuAI | ACCTGC | 1 cut(s) | 668 |
| BisI | GCNGC | 4 cut(s) | 171, 245, 303, 531 |
| BlsI | GCNGC | 4 cut(s) | 172, 246, 304, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 337 |
| Bme18I | GGWCC | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 1 cut(s) | 631 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmrFI | CCNGG | 1 cut(s) | 337 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpiI | GAAGAC | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 1 cut(s) | 851 |
| BpuMI | CCSGG | 1 cut(s) | 337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 224, 254 |
| Bse3DI | GCAATG | 2 cut(s) | 118, 533 |
| BseGI | GGATG | 2 cut(s) | 229, 861 |
| BseMI | GCAATG | 2 cut(s) | 118, 533 |
| BseXI | GCAGC | 4 cut(s) | 157, 231, 314, 517 |
| BsgI | GTGCAG | 1 cut(s) | 225 |
| BshFI | GGCC | 1 cut(s) | 129 |
| BsiHKAI | GWGCWC | 1 cut(s) | 840 |
| BsiSI | CCGG | 1 cut(s) | 336 |
| BslFI | GGGAC | 1 cut(s) | 752 |
| BsmFI | GGGAC | 1 cut(s) | 752 |
| BsnI | GGCC | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 2 cut(s) | 608, 840 |
| Bsp143I | GATC | 3 cut(s) | 412, 506, 573 |
| BspACI | CCGC | 3 cut(s) | 476, 629, 634 |
| BspANI | GGCC | 1 cut(s) | 129 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspMI | ACCTGC | 1 cut(s) | 668 |
| BspQI | GCTCTTC | 1 cut(s) | 596 |
| BspTI | CTTAAG | 1 cut(s) | 164 |
| BsrBI | CCGCTC | 1 cut(s) | 629 |
| BsrDI | GCAATG | 2 cut(s) | 118, 533 |
| BssMI | GATC | 3 cut(s) | 412, 506, 573 |
| Bst4CI | ACNGT | 2 cut(s) | 85, 708 |
| Bst6I | CTCTTC | 2 cut(s) | 486, 596 |
| BstAFI | CTTAAG | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 3 cut(s) | 524, 528, 840 |
| BstF5I | GGATG | 2 cut(s) | 229, 861 |
| BstKTI | GATC | 3 cut(s) | 415, 509, 576 |
| BstMBI | GATC | 3 cut(s) | 412, 506, 573 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 1 cut(s) | 335 |
| BstV1I | GCAGC | 4 cut(s) | 157, 231, 314, 517 |
| BstV2I | GAAGAC | 1 cut(s) | 269 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BsuRI | GGCC | 1 cut(s) | 129 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 2 cut(s) | 229, 861 |
| BveI | ACCTGC | 1 cut(s) | 668 |
| Cac8I | GCNNGC | 3 cut(s) | 524, 528, 840 |
| Cfr13I | GGNCC | 1 cut(s) | 631 |
| CpoI | CGGWCCG | 1 cut(s) | 631 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 691, 726 |
| CspI | CGGWCCG | 1 cut(s) | 631 |
| CviAII | CATG | 6 cut(s) | 71, 146, 159, 673, 749, 797 |
| DpnI | GATC | 3 cut(s) | 414, 508, 575 |
| DpnII | GATC | 3 cut(s) | 412, 506, 573 |
| EaeI | YGGCCR | 1 cut(s) | 127 |
| Eam1104I | CTCTTC | 2 cut(s) | 486, 596 |
| EarI | CTCTTC | 2 cut(s) | 486, 596 |
| Ecl136II | GAGCTC | 1 cut(s) | 838 |
| Eco24I | GRGCYC | 2 cut(s) | 608, 840 |
| Eco47I | GGWCC | 1 cut(s) | 631 |
| Eco53kI | GAGCTC | 1 cut(s) | 838 |
| EcoICRI | GAGCTC | 1 cut(s) | 838 |
| EcoT38I | GRGCYC | 2 cut(s) | 608, 840 |
| FaeI | CATG | 6 cut(s) | 74, 149, 162, 676, 752, 800 |
| FaqI | GGGAC | 1 cut(s) | 752 |
| FatI | CATG | 6 cut(s) | 70, 145, 158, 672, 748, 796 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 4 cut(s) | 171, 245, 303, 531 |
| FokI | GGATG | 2 cut(s) | 236, 848 |
| FriOI | GRGCYC | 2 cut(s) | 608, 840 |
| Fsp4HI | GCNGC | 4 cut(s) | 171, 245, 303, 531 |
| FspBI | CTAG | 1 cut(s) | 30 |
| GluI | GCNGC | 4 cut(s) | 171, 245, 303, 531 |
| HaeIII | GGCC | 1 cut(s) | 129 |
| HapII | CCGG | 1 cut(s) | 336 |
| Hin1II | CATG | 6 cut(s) | 74, 149, 162, 676, 752, 800 |
| HindIII | AAGCTT | 1 cut(s) | 520 |
| HinfI | GANTC | 6 cut(s) | 155, 281, 343, 389, 466, 566 |
| HpaII | CCGG | 1 cut(s) | 336 |
| HphI | GGTGA | 1 cut(s) | 376 |
| Hpy166II | GTNNAC | 1 cut(s) | 143 |
| Hpy188I | TCNGA | 1 cut(s) | 255 |
| Hpy8I | GTNNAC | 1 cut(s) | 143 |
| HpyAV | CCTTC | 1 cut(s) | 556 |
| HpyCH4III | ACNGT | 2 cut(s) | 85, 708 |
| HpyCH4V | TGCA | 6 cut(s) | 149, 206, 247, 352, 533, 770 |
| Hsp92II | CATG | 6 cut(s) | 74, 149, 162, 676, 752, 800 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| Kzo9I | GATC | 3 cut(s) | 412, 506, 573 |
| LguI | GCTCTTC | 1 cut(s) | 596 |
| LmnI | GCTCC | 1 cut(s) | 66 |
| LpnPI | CCDG | 6 cut(s) | 111, 349, 540, 621, 663, 708 |
| Lsp1109I | GCAGC | 4 cut(s) | 157, 231, 314, 517 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 3 cut(s) | 414, 508, 575 |
| MbiI | CCGCTC | 1 cut(s) | 629 |
| MboI | GATC | 3 cut(s) | 412, 506, 573 |
| MfeI | CAATTG | 2 cut(s) | 41, 306 |
| MhlI | GDGCHC | 2 cut(s) | 608, 840 |
| MlsI | TGGCCA | 1 cut(s) | 129 |
| MluCI | AATT | 3 cut(s) | 41, 306, 816 |
| MluNI | TGGCCA | 1 cut(s) | 129 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MmeI | TCCRAC | 1 cut(s) | 70 |
| MnlI | CCTC | 7 cut(s) | 67, 249, 373, 644, 669, 729, 875 |
| Mox20I | TGGCCA | 1 cut(s) | 129 |
| MscI | TGGCCA | 1 cut(s) | 129 |
| MseI | TTAA | 1 cut(s) | 165 |
| MslI | CAYNNNNRTG | 2 cut(s) | 357, 617 |
| Msp20I | TGGCCA | 1 cut(s) | 129 |
| MspCI | CTTAAG | 1 cut(s) | 164 |
| MspI | CCGG | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 337 |
| MunI | CAATTG | 2 cut(s) | 41, 306 |
| NciI | CCSGG | 1 cut(s) | 337 |
| NdeII | GATC | 3 cut(s) | 412, 506, 573 |
| NlaIII | CATG | 6 cut(s) | 74, 149, 162, 676, 752, 800 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PciSI | GCTCTTC | 1 cut(s) | 596 |
| PfeI | GAWTC | 5 cut(s) | 155, 343, 389, 466, 566 |
| PkrI | GCNGC | 4 cut(s) | 172, 246, 304, 532 |
| PleI | GAGTC | 1 cut(s) | 289 |
| PpsI | GAGTC | 1 cut(s) | 289 |
| PsiI | TTATAA | 1 cut(s) | 596 |
| Psp124BI | GAGCTC | 1 cut(s) | 840 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 1 cut(s) | 631 |
| RseI | CAYNNNNRTG | 2 cut(s) | 357, 617 |
| Rsr2I | CGGWCCG | 1 cut(s) | 631 |
| RsrII | CGGWCCG | 1 cut(s) | 631 |
| SacI | GAGCTC | 1 cut(s) | 840 |
| SapI | GCTCTTC | 1 cut(s) | 596 |
| SaqAI | TTAA | 1 cut(s) | 165 |
| SatI | GCNGC | 4 cut(s) | 171, 245, 303, 531 |
| Sau3AI | GATC | 3 cut(s) | 412, 506, 573 |
| Sau96I | GGNCC | 1 cut(s) | 631 |
| SchI | GAGTC | 1 cut(s) | 290 |
| ScrFI | CCNGG | 1 cut(s) | 337 |
| SduI | GDGCHC | 2 cut(s) | 608, 840 |
| SetI | ASST | 8 cut(s) | 276, 407, 524, 585, 655, 682, 793, 840 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SinI | GGWCC | 1 cut(s) | 631 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 357, 617 |
| SmlI | CTYRAG | 2 cut(s) | 164, 866 |
| SmoI | CTYRAG | 2 cut(s) | 164, 866 |
| Sse9I | AATT | 3 cut(s) | 41, 306, 816 |
| SsiI | CCGC | 3 cut(s) | 476, 629, 634 |
| SspMI | CTAG | 1 cut(s) | 30 |
| SstI | GAGCTC | 1 cut(s) | 840 |
| StyD4I | CCNGG | 1 cut(s) | 335 |
| TaaI | ACNGT | 2 cut(s) | 85, 708 |
| TaqI | TCGA | 3 cut(s) | 9, 284, 576 |
| TasI | AATT | 3 cut(s) | 41, 306, 816 |
| TfiI | GAWTC | 5 cut(s) | 155, 343, 389, 466, 566 |
| Tru1I | TTAA | 1 cut(s) | 165 |
| Tru9I | TTAA | 1 cut(s) | 165 |
| TseI | GCWGC | 4 cut(s) | 170, 244, 302, 530 |
| TspDTI | ATGAA | 2 cut(s) | 147, 837 |
| TspGWI | ACGGA | 1 cut(s) | 818 |
| Vha464I | CTTAAG | 1 cut(s) | 164 |
| VpaK11BI | GGWCC | 1 cut(s) | 631 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 30 |