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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 307 |
| AccB1I | GGYRCC | 3 cut(s) | 382, 543, 1213 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1223 |
| AccI | GTMKAC | 1 cut(s) | 1314 |
| AccIII | TCCGGA | 1 cut(s) | 508 |
| AciI | CCGC | 1 cut(s) | 643 |
| AclWI | GGATC | 1 cut(s) | 52 |
| AcoI | YGGCCR | 1 cut(s) | 1263 |
| AcsI | RAATTY | 3 cut(s) | 600, 658, 1366 |
| AcuI | CTGAAG | 2 cut(s) | 377, 947 |
| AfaI | GTAC | 3 cut(s) | 464, 1158, 1221 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 41, 478, 777, 1174, 1223 |
| AflIII | ACRYGT | 1 cut(s) | 459 |
| AgsI | TTSAA | 8 cut(s) | 140, 349, 442, 703, 874, 905, 1061, 1124 |
| AjiI | CACGTC | 1 cut(s) | 774 |
| AjnI | CCWGG | 1 cut(s) | 579 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1073, 1105 |
| AluBI | AGCT | 9 cut(s) | 71, 257, 352, 394, 572, 728, 958, 1000, 1064 |
| AluI | AGCT | 9 cut(s) | 71, 257, 352, 394, 572, 728, 958, 1000, 1064 |
| Alw21I | GWGCWC | 1 cut(s) | 795 |
| Alw26I | GTCTC | 5 cut(s) | 143, 222, 1241, 1316, 1381 |
| AlwI | GGATC | 1 cut(s) | 52 |
| Aor13HI | TCCGGA | 1 cut(s) | 508 |
| AoxI | GGCC | 2 cut(s) | 143, 1263 |
| ApeKI | GCWGC | 6 cut(s) | 200, 352, 419, 958, 1043, 1138 |
| ApoI | RAATTY | 3 cut(s) | 600, 658, 1366 |
| AspS9I | GGNCC | 1 cut(s) | 143 |
| AsuHPI | GGTGA | 4 cut(s) | 418, 1081, 1238, 1256 |
| AxyI | CCTNAGG | 1 cut(s) | 711 |
| BalI | TGGCCA | 1 cut(s) | 1265 |
| BanI | GGYRCC | 3 cut(s) | 382, 543, 1213 |
| Bbv12I | GWGCWC | 1 cut(s) | 795 |
| BbvCI | CCTCAGC | 1 cut(s) | 1065 |
| BbvI | GCAGC | 6 cut(s) | 187, 339, 406, 945, 1030, 1150 |
| BccI | CCATC | 1 cut(s) | 96 |
| BciT130I | CCWGG | 1 cut(s) | 581 |
| BciVI | GTATCC | 1 cut(s) | 529 |
| BcoDI | GTCTC | 5 cut(s) | 143, 222, 1241, 1316, 1381 |
| BfaI | CTAG | 3 cut(s) | 915, 938, 1208 |
| BfuI | GTATCC | 1 cut(s) | 529 |
| BisI | GCNGC | 6 cut(s) | 201, 353, 420, 959, 1044, 1139 |
| BlsI | GCNGC | 6 cut(s) | 202, 354, 421, 960, 1045, 1140 |
| Bme1390I | CCNGG | 1 cut(s) | 581 |
| BmgBI | CACGTC | 1 cut(s) | 774 |
| BmgT120I | GGNCC | 1 cut(s) | 143 |
| BmiI | GGNNCC | 3 cut(s) | 384, 545, 1215 |
| BmrFI | CCNGG | 1 cut(s) | 581 |
| BmrI | ACTGGG | 1 cut(s) | 1137 |
| BmsI | GCATC | 2 cut(s) | 361, 1122 |
| BmuI | ACTGGG | 1 cut(s) | 1137 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1009, 1041 |
| BpmI | CTGGAG | 1 cut(s) | 836 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1006, 1065 |
| BpuEI | CTTGAG | 2 cut(s) | 839, 1340 |
| BsaAI | YACGTR | 1 cut(s) | 590 |
| BsaI | GGTCTC | 2 cut(s) | 1241, 1316 |
| BsaJI | CCNNGG | 1 cut(s) | 1030 |
| BsaWI | WCCGGW | 1 cut(s) | 508 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 41, 478, 777, 1174, 1223 |
| Bse1I | ACTGG | 7 cut(s) | 46, 343, 547, 678, 1143, 1217, 1266 |
| Bse21I | CCTNAGG | 1 cut(s) | 711 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| BseAI | TCCGGA | 1 cut(s) | 508 |
| BseBI | CCWGG | 1 cut(s) | 581 |
| BseDI | CCNNGG | 1 cut(s) | 1030 |
| BseGI | GGATG | 5 cut(s) | 325, 376, 468, 487, 517 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 41, 478, 777, 1174, 1223 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseMII | CTCAG | 4 cut(s) | 138, 702, 1020, 1056 |
| BseNI | ACTGG | 7 cut(s) | 46, 343, 547, 678, 1143, 1217, 1266 |
| BseRI | GAGGAG | 4 cut(s) | 956, 959, 1196, 1376 |
| BseXI | GCAGC | 6 cut(s) | 187, 339, 406, 945, 1030, 1150 |
| BsgI | GTGCAG | 2 cut(s) | 1029, 1157 |
| BshFI | GGCC | 2 cut(s) | 145, 1265 |
| BshNI | GGYRCC | 3 cut(s) | 382, 543, 1213 |
| BsiHKAI | GWGCWC | 1 cut(s) | 795 |
| BsiSI | CCGG | 1 cut(s) | 509 |
| BslFI | GGGAC | 2 cut(s) | 625, 955 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 41, 478, 777, 1174, 1223 |
| BsmAI | GTCTC | 5 cut(s) | 143, 222, 1241, 1316, 1381 |
| BsmFI | GGGAC | 2 cut(s) | 625, 955 |
| BsnI | GGCC | 2 cut(s) | 145, 1265 |
| Bso31I | GGTCTC | 2 cut(s) | 1241, 1316 |
| Bsp1286I | GDGCHC | 1 cut(s) | 795 |
| Bsp13I | TCCGGA | 1 cut(s) | 508 |
| Bsp1407I | TGTACA | 1 cut(s) | 462 |
| Bsp143I | GATC | 1 cut(s) | 44 |
| BspACI | CCGC | 1 cut(s) | 643 |
| BspANI | GGCC | 2 cut(s) | 145, 1265 |
| BspCNI | CTCAG | 4 cut(s) | 139, 703, 1019, 1057 |
| BspEI | TCCGGA | 1 cut(s) | 508 |
| BspLI | GGNNCC | 3 cut(s) | 384, 545, 1215 |
| BspPI | GGATC | 1 cut(s) | 52 |
| BspQI | GCTCTTC | 1 cut(s) | 948 |
| BspT107I | GGYRCC | 3 cut(s) | 382, 543, 1213 |
| BspTNI | GGTCTC | 2 cut(s) | 1241, 1316 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BsrGI | TGTACA | 1 cut(s) | 462 |
| BsrI | ACTGG | 7 cut(s) | 46, 343, 547, 678, 1143, 1217, 1266 |
| BssECI | CCNNGG | 1 cut(s) | 1030 |
| BssMI | GATC | 1 cut(s) | 44 |
| BssT1I | CCWWGG | 1 cut(s) | 1030 |
| Bst2UI | CCWGG | 1 cut(s) | 581 |
| Bst4CI | ACNGT | 3 cut(s) | 1161, 1276, 1303 |
| Bst6I | CTCTTC | 4 cut(s) | 948, 1119, 1173, 1224 |
| BstAUI | TGTACA | 1 cut(s) | 462 |
| BstBAI | YACGTR | 1 cut(s) | 590 |
| BstDEI | CTNAG | 6 cut(s) | 74, 147, 243, 711, 1006, 1065 |
| BstF5I | GGATG | 5 cut(s) | 325, 376, 468, 487, 517 |
| BstKTI | GATC | 1 cut(s) | 47 |
| BstMAI | GTCTC | 5 cut(s) | 143, 222, 1241, 1316, 1381 |
| BstMBI | GATC | 1 cut(s) | 44 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 358, 391 |
| BstNI | CCWGG | 1 cut(s) | 581 |
| BstSCI | CCNGG | 1 cut(s) | 579 |
| BstV1I | GCAGC | 6 cut(s) | 187, 339, 406, 945, 1030, 1150 |
| Bsu36I | CCTNAGG | 1 cut(s) | 711 |
| BsuI | GTATCC | 1 cut(s) | 529 |
| BsuRI | GGCC | 2 cut(s) | 145, 1265 |
| BtrI | CACGTC | 1 cut(s) | 774 |
| BtsCI | GGATG | 5 cut(s) | 325, 376, 468, 487, 517 |
| BtsIMutI | CAGTG | 2 cut(s) | 1150, 1315 |
| Cfr13I | GGNCC | 1 cut(s) | 143 |
| Csp6I | GTAC | 3 cut(s) | 463, 1157, 1220 |
| CviAII | CATG | 3 cut(s) | 229, 1223, 1343 |
| CviQI | GTAC | 3 cut(s) | 463, 1157, 1220 |
| DdeI | CTNAG | 6 cut(s) | 74, 147, 243, 711, 1006, 1065 |
| DpnI | GATC | 1 cut(s) | 46 |
| DpnII | GATC | 1 cut(s) | 44 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 307 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 307 |
| EaeI | YGGCCR | 1 cut(s) | 1263 |
| Eam1104I | CTCTTC | 4 cut(s) | 948, 1119, 1173, 1224 |
| EarI | CTCTTC | 4 cut(s) | 948, 1119, 1173, 1224 |
| Eco130I | CCWWGG | 1 cut(s) | 1030 |
| Eco31I | GGTCTC | 2 cut(s) | 1241, 1316 |
| Eco57I | CTGAAG | 2 cut(s) | 377, 947 |
| Eco81I | CCTNAGG | 1 cut(s) | 711 |
| EcoO109I | RGGNCCY | 1 cut(s) | 143 |
| EcoRII | CCWGG | 1 cut(s) | 579 |
| EcoT14I | CCWWGG | 1 cut(s) | 1030 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 376 |
| ErhI | CCWWGG | 1 cut(s) | 1030 |
| FaeI | CATG | 3 cut(s) | 232, 1226, 1346 |
| FaqI | GGGAC | 2 cut(s) | 625, 955 |
| FatI | CATG | 3 cut(s) | 228, 1222, 1342 |
| FauI | CCCGC | 1 cut(s) | 650 |
| FblI | GTMKAC | 1 cut(s) | 1314 |
| Fnu4HI | GCNGC | 6 cut(s) | 201, 353, 420, 959, 1044, 1139 |
| FokI | GGATG | 5 cut(s) | 332, 383, 455, 494, 524 |
| Fsp4HI | GCNGC | 6 cut(s) | 201, 353, 420, 959, 1044, 1139 |
| FspBI | CTAG | 3 cut(s) | 915, 938, 1208 |
| GluI | GCNGC | 6 cut(s) | 201, 353, 420, 959, 1044, 1139 |
| GsuI | CTGGAG | 1 cut(s) | 836 |
| HaeIII | GGCC | 2 cut(s) | 145, 1265 |
| HapII | CCGG | 1 cut(s) | 509 |
| Hin1II | CATG | 3 cut(s) | 232, 1226, 1346 |
| HincII | GTYRAC | 3 cut(s) | 276, 453, 1315 |
| HindII | GTYRAC | 3 cut(s) | 276, 453, 1315 |
| HindIII | AAGCTT | 1 cut(s) | 998 |
| HinfI | GANTC | 2 cut(s) | 811, 968 |
| HpaI | GTTAAC | 1 cut(s) | 453 |
| HpaII | CCGG | 1 cut(s) | 509 |
| HphI | GGTGA | 4 cut(s) | 418, 1081, 1238, 1256 |
| Hpy166II | GTNNAC | 4 cut(s) | 276, 453, 463, 1315 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 222, 313 |
| Hpy188III | TCNNGA | 4 cut(s) | 442, 509, 815, 1008 |
| Hpy8I | GTNNAC | 4 cut(s) | 276, 453, 463, 1315 |
| HpyAV | CCTTC | 6 cut(s) | 134, 526, 586, 943, 1033, 1066 |
| HpyCH4III | ACNGT | 3 cut(s) | 1161, 1276, 1303 |
| HpyCH4IV | ACGT | 3 cut(s) | 459, 589, 773 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 134, 294, 374, 422, 656, 803, 1046, 1138 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 358, 391 |
| HpyF3I | CTNAG | 6 cut(s) | 74, 147, 243, 711, 1006, 1065 |
| HpySE526I | ACGT | 3 cut(s) | 459, 589, 773 |
| Hsp92II | CATG | 3 cut(s) | 232, 1226, 1346 |
| Kpn2I | TCCGGA | 1 cut(s) | 508 |
| KspAI | GTTAAC | 1 cut(s) | 453 |
| Kzo9I | GATC | 1 cut(s) | 44 |
| LguI | GCTCTTC | 1 cut(s) | 948 |
| LmnI | GCTCC | 1 cut(s) | 817 |
| Lsp1109I | GCAGC | 6 cut(s) | 187, 339, 406, 945, 1030, 1150 |
| LweI | GCATC | 2 cut(s) | 361, 1122 |
| MaeI | CTAG | 3 cut(s) | 915, 938, 1208 |
| MaeII | ACGT | 3 cut(s) | 459, 589, 773 |
| MaeIII | GTNAC | 2 cut(s) | 982, 1198 |
| MalI | GATC | 1 cut(s) | 46 |
| MboI | GATC | 1 cut(s) | 44 |
| MfeI | CAATTG | 2 cut(s) | 135, 1353 |
| MhlI | GDGCHC | 1 cut(s) | 795 |
| MlsI | TGGCCA | 1 cut(s) | 1265 |
| MluNI | TGGCCA | 1 cut(s) | 1265 |
| MlyI | GAGTC | 1 cut(s) | 977 |
| MmeI | TCCRAC | 1 cut(s) | 273 |
| Mox20I | TGGCCA | 1 cut(s) | 1265 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 376 |
| MroI | TCCGGA | 1 cut(s) | 508 |
| MscI | TGGCCA | 1 cut(s) | 1265 |
| MseI | TTAA | 7 cut(s) | 81, 396, 452, 662, 993, 1097, 1163 |
| Msp20I | TGGCCA | 1 cut(s) | 1265 |
| MspI | CCGG | 1 cut(s) | 509 |
| MspR9I | CCNGG | 1 cut(s) | 581 |
| MunI | CAATTG | 2 cut(s) | 135, 1353 |
| MvaI | CCWGG | 1 cut(s) | 581 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 358, 391 |
| NdeII | GATC | 1 cut(s) | 44 |
| NlaIII | CATG | 3 cut(s) | 232, 1226, 1346 |
| NlaIV | GGNNCC | 3 cut(s) | 384, 545, 1215 |
| NmeAIII | GCCGAG | 1 cut(s) | 658 |
| NmuCI | GTSAC | 2 cut(s) | 982, 1198 |
| NsiI | ATGCAT | 2 cut(s) | 6, 376 |
| PciSI | GCTCTTC | 1 cut(s) | 948 |
| PfeI | GAWTC | 1 cut(s) | 811 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1223 |
| PfoI | TCCNGGA | 1 cut(s) | 579 |
| PkrI | GCNGC | 6 cut(s) | 202, 354, 421, 960, 1045, 1140 |
| PleI | GAGTC | 1 cut(s) | 976 |
| PpsI | GAGTC | 1 cut(s) | 976 |
| Ppu21I | YACGTR | 1 cut(s) | 590 |
| Psp6I | CCWGG | 1 cut(s) | 579 |
| PspGI | CCWGG | 1 cut(s) | 579 |
| PspN4I | GGNNCC | 3 cut(s) | 384, 545, 1215 |
| PspPI | GGNCC | 1 cut(s) | 143 |
| RsaI | GTAC | 3 cut(s) | 464, 1158, 1221 |
| RsaNI | GTAC | 3 cut(s) | 463, 1157, 1220 |
| SalI | GTCGAC | 1 cut(s) | 1313 |
| SapI | GCTCTTC | 1 cut(s) | 948 |
| SaqAI | TTAA | 7 cut(s) | 81, 396, 452, 662, 993, 1097, 1163 |
| SatI | GCNGC | 6 cut(s) | 201, 353, 420, 959, 1044, 1139 |
| Sau3AI | GATC | 1 cut(s) | 44 |
| Sau96I | GGNCC | 1 cut(s) | 143 |
| SchI | GAGTC | 1 cut(s) | 977 |
| ScrFI | CCNGG | 1 cut(s) | 581 |
| SduI | GDGCHC | 1 cut(s) | 795 |
| SfaNI | GCATC | 2 cut(s) | 361, 1122 |
| SmlI | CTYRAG | 2 cut(s) | 854, 1319 |
| SmoI | CTYRAG | 2 cut(s) | 854, 1319 |
| SsiI | CCGC | 1 cut(s) | 643 |
| SspI | AATATT | 1 cut(s) | 1057 |
| SspMI | CTAG | 3 cut(s) | 915, 938, 1208 |
| StyD4I | CCNGG | 1 cut(s) | 579 |
| StyI | CCWWGG | 1 cut(s) | 1030 |
| TaaI | ACNGT | 3 cut(s) | 1161, 1276, 1303 |
| TaiI | ACGT | 3 cut(s) | 462, 592, 776 |
| TaqI | TCGA | 2 cut(s) | 1116, 1314 |
| TatI | WGTACW | 2 cut(s) | 462, 1219 |
| TfiI | GAWTC | 1 cut(s) | 811 |
| Tru1I | TTAA | 7 cut(s) | 81, 396, 452, 662, 993, 1097, 1163 |
| Tru9I | TTAA | 7 cut(s) | 81, 396, 452, 662, 993, 1097, 1163 |
| TscAI | CASTG | 2 cut(s) | 1150, 1315 |
| TseFI | GTSAC | 2 cut(s) | 982, 1198 |
| TseI | GCWGC | 6 cut(s) | 200, 352, 419, 958, 1043, 1138 |
| Tsp45I | GTSAC | 2 cut(s) | 982, 1198 |
| TspDTI | ATGAA | 5 cut(s) | 110, 342, 402, 498, 1119 |
| TspGWI | ACGGA | 1 cut(s) | 901 |
| TspRI | CASTG | 2 cut(s) | 1150, 1315 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1223 |
| XapI | RAATTY | 3 cut(s) | 600, 658, 1366 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1258, 1273 |
| XmiI | GTMKAC | 1 cut(s) | 1314 |
| XspI | CTAG | 3 cut(s) | 915, 938, 1208 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 376 |