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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 450 |
| AccI | GTMKAC | 1 cut(s) | 467 |
| AccIII | TCCGGA | 1 cut(s) | 1032 |
| AciI | CCGC | 1 cut(s) | 912 |
| AclWI | GGATC | 5 cut(s) | 313, 326, 696, 947, 960 |
| AcoI | YGGCCR | 1 cut(s) | 265 |
| AcsI | RAATTY | 1 cut(s) | 542 |
| AcuI | CTGAAG | 1 cut(s) | 200 |
| AfaI | GTAC | 2 cut(s) | 242, 647 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 328, 450, 507, 711, 962 |
| AgsI | TTSAA | 3 cut(s) | 165, 463, 582 |
| AjnI | CCWGG | 3 cut(s) | 314, 709, 993 |
| AluBI | AGCT | 7 cut(s) | 43, 56, 214, 434, 578, 749, 1001 |
| AluI | AGCT | 7 cut(s) | 43, 56, 214, 434, 578, 749, 1001 |
| Alw21I | GWGCWC | 1 cut(s) | 188 |
| Alw26I | GTCTC | 2 cut(s) | 119, 666 |
| AlwI | GGATC | 5 cut(s) | 313, 326, 696, 947, 960 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 223 |
| Ama87I | CYCGRG | 2 cut(s) | 641, 840 |
| Aor13HI | TCCGGA | 1 cut(s) | 1032 |
| AoxI | GGCC | 4 cut(s) | 227, 265, 406, 789 |
| ApoI | RAATTY | 1 cut(s) | 542 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 458 |
| AspLEI | GCGC | 1 cut(s) | 930 |
| AspS9I | GGNCC | 1 cut(s) | 342 |
| AsuII | TTCGAA | 2 cut(s) | 74, 92 |
| AvaI | CYCGRG | 2 cut(s) | 641, 840 |
| AvaII | GGWCC | 1 cut(s) | 342 |
| BalI | TGGCCA | 1 cut(s) | 267 |
| BamHI | GGATCC | 2 cut(s) | 318, 952 |
| BauI | CACGAG | 1 cut(s) | 195 |
| BbsI | GAAGAC | 2 cut(s) | 63, 81 |
| Bbv12I | GWGCWC | 1 cut(s) | 188 |
| BciT130I | CCWGG | 3 cut(s) | 316, 711, 995 |
| BcoDI | GTCTC | 2 cut(s) | 119, 666 |
| BfaI | CTAG | 1 cut(s) | 750 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 414 |
| Bme1390I | CCNGG | 3 cut(s) | 316, 711, 995 |
| Bme18I | GGWCC | 1 cut(s) | 342 |
| BmeT110I | CYCGRG | 2 cut(s) | 641, 840 |
| BmgT120I | GGNCC | 1 cut(s) | 342 |
| BmiI | GGNNCC | 4 cut(s) | 34, 320, 344, 954 |
| BmrFI | CCNGG | 3 cut(s) | 316, 711, 995 |
| BmsI | GCATC | 2 cut(s) | 273, 556 |
| BpiI | GAAGAC | 2 cut(s) | 63, 81 |
| BpmI | CTGGAG | 1 cut(s) | 298 |
| Bpu14I | TTCGAA | 2 cut(s) | 74, 92 |
| BpuEI | CTTGAG | 1 cut(s) | 45 |
| Bsa29I | ATCGAT | 2 cut(s) | 655, 727 |
| BsaJI | CCNNGG | 5 cut(s) | 354, 409, 710, 960, 984 |
| BsaWI | WCCGGW | 1 cut(s) | 1032 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 71, 101 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 328, 450, 507, 711, 962 |
| Bse1I | ACTGG | 1 cut(s) | 175 |
| Bse3DI | GCAATG | 1 cut(s) | 907 |
| BseAI | TCCGGA | 1 cut(s) | 1032 |
| BseBI | CCWGG | 3 cut(s) | 316, 711, 995 |
| BseCI | ATCGAT | 2 cut(s) | 655, 727 |
| BseDI | CCNNGG | 5 cut(s) | 354, 409, 710, 960, 984 |
| BseGI | GGATG | 1 cut(s) | 571 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 328, 450, 507, 711, 962 |
| BseMI | GCAATG | 1 cut(s) | 907 |
| BseMII | CTCAG | 4 cut(s) | 114, 168, 215, 891 |
| BseNI | ACTGG | 1 cut(s) | 175 |
| BseRI | GAGGAG | 1 cut(s) | 48 |
| BseYI | CCCAGC | 1 cut(s) | 896 |
| BshFI | GGCC | 4 cut(s) | 229, 267, 408, 791 |
| BshVI | ATCGAT | 2 cut(s) | 655, 727 |
| BsiHKAI | GWGCWC | 1 cut(s) | 188 |
| BsiHKCI | CYCGRG | 2 cut(s) | 641, 840 |
| BsiSI | CCGG | 1 cut(s) | 1033 |
| BslFI | GGGAC | 2 cut(s) | 328, 953 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 328, 450, 507, 711, 962 |
| BsmAI | GTCTC | 2 cut(s) | 119, 666 |
| BsmFI | GGGAC | 2 cut(s) | 328, 953 |
| BsmI | GAATGC | 2 cut(s) | 610, 914 |
| BsnI | GGCC | 4 cut(s) | 229, 267, 408, 791 |
| BsoBI | CYCGRG | 2 cut(s) | 641, 840 |
| Bsp119I | TTCGAA | 2 cut(s) | 74, 92 |
| Bsp1286I | GDGCHC | 1 cut(s) | 188 |
| Bsp13I | TCCGGA | 1 cut(s) | 1032 |
| Bsp143I | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| BspACI | CCGC | 1 cut(s) | 912 |
| BspANI | GGCC | 4 cut(s) | 229, 267, 408, 791 |
| BspCNI | CTCAG | 4 cut(s) | 115, 167, 216, 890 |
| BspDI | ATCGAT | 2 cut(s) | 655, 727 |
| BspEI | TCCGGA | 1 cut(s) | 1032 |
| BspHI | TCATGA | 1 cut(s) | 933 |
| BspLI | GGNNCC | 4 cut(s) | 34, 320, 344, 954 |
| BspPI | GGATC | 5 cut(s) | 313, 326, 696, 947, 960 |
| BspT104I | TTCGAA | 2 cut(s) | 74, 92 |
| BsrDI | GCAATG | 1 cut(s) | 907 |
| BsrI | ACTGG | 1 cut(s) | 175 |
| BssECI | CCNNGG | 5 cut(s) | 354, 409, 710, 960, 984 |
| BssMI | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| BssSI | CACGAG | 1 cut(s) | 195 |
| BssT1I | CCWWGG | 4 cut(s) | 354, 409, 960, 984 |
| Bst2BI | CACGAG | 1 cut(s) | 195 |
| Bst2UI | CCWGG | 3 cut(s) | 316, 711, 995 |
| Bst4CI | ACNGT | 1 cut(s) | 809 |
| Bst6I | CTCTTC | 3 cut(s) | 200, 737, 780 |
| BstBI | TTCGAA | 2 cut(s) | 74, 92 |
| BstC8I | GCNNGC | 1 cut(s) | 310 |
| BstDEI | CTNAG | 5 cut(s) | 21, 123, 154, 224, 877 |
| BstF5I | GGATG | 1 cut(s) | 571 |
| BstHHI | GCGC | 1 cut(s) | 930 |
| BstKTI | GATC | 5 cut(s) | 321, 691, 727, 731, 955 |
| BstMAI | GTCTC | 2 cut(s) | 119, 666 |
| BstMBI | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 414, 575 |
| BstNI | CCWGG | 3 cut(s) | 316, 711, 995 |
| BstNSI | RCATGY | 1 cut(s) | 623 |
| BstSCI | CCNGG | 3 cut(s) | 314, 709, 993 |
| BstV2I | GAAGAC | 2 cut(s) | 63, 81 |
| BstX2I | RGATCY | 2 cut(s) | 318, 952 |
| BstYI | RGATCY | 2 cut(s) | 318, 952 |
| Bsu15I | ATCGAT | 2 cut(s) | 655, 727 |
| BsuRI | GGCC | 4 cut(s) | 229, 267, 408, 791 |
| BsuTUI | ATCGAT | 2 cut(s) | 655, 727 |
| BtsCI | GGATG | 1 cut(s) | 571 |
| BtsIMutI | CAGTG | 1 cut(s) | 814 |
| Cac8I | GCNNGC | 1 cut(s) | 310 |
| CaiI | CAGNNNCTG | 1 cut(s) | 223 |
| CciI | TCATGA | 1 cut(s) | 933 |
| CfoI | GCGC | 1 cut(s) | 930 |
| Cfr13I | GGNCC | 1 cut(s) | 342 |
| ClaI | ATCGAT | 2 cut(s) | 655, 727 |
| Csp6I | GTAC | 2 cut(s) | 241, 646 |
| CviAII | CATG | 6 cut(s) | 391, 620, 706, 764, 934, 949 |
| CviQI | GTAC | 2 cut(s) | 241, 646 |
| DdeI | CTNAG | 5 cut(s) | 21, 123, 154, 224, 877 |
| DpnI | GATC | 5 cut(s) | 320, 690, 726, 730, 954 |
| DpnII | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| DraI | TTTAAA | 1 cut(s) | 816 |
| EaeI | YGGCCR | 1 cut(s) | 265 |
| Eam1104I | CTCTTC | 3 cut(s) | 200, 737, 780 |
| EarI | CTCTTC | 3 cut(s) | 200, 737, 780 |
| Eco130I | CCWWGG | 4 cut(s) | 354, 409, 960, 984 |
| Eco47I | GGWCC | 1 cut(s) | 342 |
| Eco57I | CTGAAG | 1 cut(s) | 200 |
| Eco88I | CYCGRG | 2 cut(s) | 641, 840 |
| EcoRII | CCWGG | 3 cut(s) | 314, 709, 993 |
| EcoT14I | CCWWGG | 4 cut(s) | 354, 409, 960, 984 |
| ErhI | CCWWGG | 4 cut(s) | 354, 409, 960, 984 |
| FaeI | CATG | 6 cut(s) | 394, 623, 709, 767, 937, 952 |
| FaqI | GGGAC | 2 cut(s) | 328, 953 |
| FatI | CATG | 6 cut(s) | 390, 619, 705, 763, 933, 948 |
| FauI | CCCGC | 1 cut(s) | 905 |
| FblI | GTMKAC | 1 cut(s) | 467 |
| FokI | GGATG | 1 cut(s) | 578 |
| FspBI | CTAG | 1 cut(s) | 750 |
| GlaI | GCGC | 1 cut(s) | 929 |
| GsaI | CCCAGC | 1 cut(s) | 900 |
| GsuI | CTGGAG | 1 cut(s) | 298 |
| HaeIII | GGCC | 4 cut(s) | 229, 267, 408, 791 |
| HapII | CCGG | 1 cut(s) | 1033 |
| HhaI | GCGC | 1 cut(s) | 930 |
| Hin1II | CATG | 6 cut(s) | 394, 623, 709, 767, 937, 952 |
| Hin6I | GCGC | 1 cut(s) | 928 |
| HinP1I | GCGC | 1 cut(s) | 928 |
| HincII | GTYRAC | 1 cut(s) | 388 |
| HindII | GTYRAC | 1 cut(s) | 388 |
| HindIII | AAGCTT | 3 cut(s) | 41, 212, 999 |
| HinfI | GANTC | 3 cut(s) | 26, 161, 602 |
| HpaII | CCGG | 1 cut(s) | 1033 |
| Hpy166II | GTNNAC | 4 cut(s) | 331, 388, 468, 805 |
| Hpy188I | TCNGA | 2 cut(s) | 157, 219 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 663, 802, 934, 1033 |
| Hpy8I | GTNNAC | 4 cut(s) | 331, 388, 468, 805 |
| HpyAV | CCTTC | 4 cut(s) | 70, 448, 500, 966 |
| HpyCH4III | ACNGT | 1 cut(s) | 809 |
| HpyCH4IV | ACGT | 1 cut(s) | 850 |
| HpyCH4V | TGCA | 3 cut(s) | 286, 610, 623 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 414, 575 |
| HpyF3I | CTNAG | 5 cut(s) | 21, 123, 154, 224, 877 |
| HpySE526I | ACGT | 1 cut(s) | 850 |
| Hsp92II | CATG | 6 cut(s) | 394, 623, 709, 767, 937, 952 |
| HspAI | GCGC | 1 cut(s) | 928 |
| Kpn2I | TCCGGA | 1 cut(s) | 1032 |
| Kzo9I | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| LmnI | GCTCC | 4 cut(s) | 38, 61, 317, 367 |
| LweI | GCATC | 2 cut(s) | 273, 556 |
| MaeI | CTAG | 1 cut(s) | 750 |
| MaeII | ACGT | 1 cut(s) | 850 |
| MalI | GATC | 5 cut(s) | 320, 690, 726, 730, 954 |
| MboI | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| MboII | GAAGA | 7 cut(s) | 63, 81, 106, 109, 217, 754, 797 |
| MfeI | CAATTG | 2 cut(s) | 231, 692 |
| MflI | RGATCY | 2 cut(s) | 318, 952 |
| MhlI | GDGCHC | 1 cut(s) | 188 |
| MlsI | TGGCCA | 1 cut(s) | 267 |
| MluCI | AATT | 8 cut(s) | 231, 515, 542, 692, 720, 861, 1062, 1078 |
| MluNI | TGGCCA | 1 cut(s) | 267 |
| MlyI | GAGTC | 1 cut(s) | 611 |
| Mox20I | TGGCCA | 1 cut(s) | 267 |
| MroI | TCCGGA | 1 cut(s) | 1032 |
| MroXI | GAANNNNTTC | 1 cut(s) | 458 |
| MscI | TGGCCA | 1 cut(s) | 267 |
| MseI | TTAA | 3 cut(s) | 518, 815, 1068 |
| MslI | CAYNNNNRTG | 1 cut(s) | 947 |
| Msp20I | TGGCCA | 1 cut(s) | 267 |
| MspI | CCGG | 1 cut(s) | 1033 |
| MspR9I | CCNGG | 3 cut(s) | 316, 711, 995 |
| MunI | CAATTG | 2 cut(s) | 231, 692 |
| Mva1269I | GAATGC | 2 cut(s) | 610, 914 |
| MvaI | CCWGG | 3 cut(s) | 316, 711, 995 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 414, 575 |
| NdeII | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| NlaIII | CATG | 6 cut(s) | 394, 623, 709, 767, 937, 952 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 320, 344, 954 |
| NspI | RCATGY | 1 cut(s) | 623 |
| NspV | TTCGAA | 2 cut(s) | 74, 92 |
| PaeR7I | CTCGAG | 1 cut(s) | 641 |
| PagI | TCATGA | 1 cut(s) | 933 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 661 |
| PctI | GAATGC | 2 cut(s) | 610, 914 |
| PdmI | GAANNNNTTC | 1 cut(s) | 458 |
| PfeI | GAWTC | 2 cut(s) | 26, 161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 450 |
| PfoI | TCCNGGA | 1 cut(s) | 314 |
| PleI | GAGTC | 1 cut(s) | 610 |
| PpsI | GAGTC | 1 cut(s) | 610 |
| Psp6I | CCWGG | 3 cut(s) | 314, 709, 993 |
| PspFI | CCCAGC | 1 cut(s) | 896 |
| PspGI | CCWGG | 3 cut(s) | 314, 709, 993 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 320, 344, 954 |
| PspPI | GGNCC | 1 cut(s) | 342 |
| PspXI | VCTCGAGB | 1 cut(s) | 641 |
| PstNI | CAGNNNCTG | 1 cut(s) | 223 |
| PsuI | RGATCY | 2 cut(s) | 318, 952 |
| RsaI | GTAC | 2 cut(s) | 242, 647 |
| RsaNI | GTAC | 2 cut(s) | 241, 646 |
| RseI | CAYNNNNRTG | 1 cut(s) | 947 |
| SaqAI | TTAA | 3 cut(s) | 518, 815, 1068 |
| Sau3AI | GATC | 5 cut(s) | 318, 688, 724, 728, 952 |
| Sau96I | GGNCC | 1 cut(s) | 342 |
| SchI | GAGTC | 1 cut(s) | 611 |
| ScrFI | CCNGG | 3 cut(s) | 316, 711, 995 |
| SduI | GDGCHC | 1 cut(s) | 188 |
| SfaNI | GCATC | 2 cut(s) | 273, 556 |
| Sfr274I | CTCGAG | 1 cut(s) | 641 |
| SfuI | TTCGAA | 2 cut(s) | 74, 92 |
| SinI | GGWCC | 1 cut(s) | 342 |
| SlaI | CTCGAG | 1 cut(s) | 641 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 947 |
| SmlI | CTYRAG | 2 cut(s) | 60, 641 |
| SmoI | CTYRAG | 2 cut(s) | 60, 641 |
| Sse9I | AATT | 8 cut(s) | 231, 515, 542, 692, 720, 861, 1062, 1078 |
| SsiI | CCGC | 1 cut(s) | 912 |
| SspMI | CTAG | 1 cut(s) | 750 |
| StyD4I | CCNGG | 3 cut(s) | 314, 709, 993 |
| StyI | CCWWGG | 4 cut(s) | 354, 409, 960, 984 |
| TaaI | ACNGT | 1 cut(s) | 809 |
| TaiI | ACGT | 1 cut(s) | 853 |
| TaqI | TCGA | 9 cut(s) | 74, 92, 175, 642, 655, 664, 727, 780, 906 |
| TasI | AATT | 8 cut(s) | 231, 515, 542, 692, 720, 861, 1062, 1078 |
| TatI | WGTACW | 2 cut(s) | 240, 645 |
| TfiI | GAWTC | 2 cut(s) | 26, 161 |
| Tru1I | TTAA | 3 cut(s) | 518, 815, 1068 |
| Tru9I | TTAA | 3 cut(s) | 518, 815, 1068 |
| TscAI | CASTG | 1 cut(s) | 814 |
| TspDTI | ATGAA | 9 cut(s) | 98, 102, 116, 535, 798, 922, 993, 1041, 1053 |
| TspRI | CASTG | 1 cut(s) | 814 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 450 |
| VpaK11BI | GGWCC | 1 cut(s) | 342 |
| XapI | RAATTY | 1 cut(s) | 542 |
| XceI | RCATGY | 1 cut(s) | 623 |
| XhoI | CTCGAG | 1 cut(s) | 641 |
| XmiI | GTMKAC | 1 cut(s) | 467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 458 |
| XspI | CTAG | 1 cut(s) | 750 |