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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 22 |
| AciI | CCGC | 1 cut(s) | 160 |
| AclWI | GGATC | 1 cut(s) | 314 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcsI | RAATTY | 2 cut(s) | 65, 149 |
| AcuI | CTGAAG | 1 cut(s) | 352 |
| AflII | CTTAAG | 1 cut(s) | 263 |
| AgsI | TTSAA | 2 cut(s) | 46, 298 |
| AluBI | AGCT | 2 cut(s) | 109, 238 |
| AluI | AGCT | 2 cut(s) | 109, 238 |
| AlwI | GGATC | 1 cut(s) | 314 |
| AoxI | GGCC | 2 cut(s) | 139, 273 |
| ApeKI | GCWGC | 2 cut(s) | 238, 417 |
| ApoI | RAATTY | 2 cut(s) | 65, 149 |
| AspLEI | GCGC | 1 cut(s) | 119 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 48, 301 |
| AxyI | CCTNAGG | 1 cut(s) | 325 |
| BalI | TGGCCA | 1 cut(s) | 275 |
| BbvI | GCAGC | 2 cut(s) | 225, 404 |
| BccI | CCATC | 3 cut(s) | 296, 320, 371 |
| BclI | TGATCA | 1 cut(s) | 217 |
| BfoI | RGCGCY | 1 cut(s) | 120 |
| BfrI | CTTAAG | 1 cut(s) | 263 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 281 |
| BisI | GCNGC | 2 cut(s) | 239, 418 |
| BlsI | GCNGC | 2 cut(s) | 240, 419 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 1 cut(s) | 311 |
| Bse118I | RCCGGY | 1 cut(s) | 413 |
| Bse21I | CCTNAGG | 1 cut(s) | 325 |
| Bse8I | GATNNNNATC | 1 cut(s) | 311 |
| BseGI | GGATG | 3 cut(s) | 307, 312, 382 |
| BseJI | GATNNNNATC | 1 cut(s) | 311 |
| BseRI | GAGGAG | 1 cut(s) | 196 |
| BseXI | GCAGC | 2 cut(s) | 225, 404 |
| Bsh1285I | CGRYCG | 1 cut(s) | 26 |
| BshFI | GGCC | 2 cut(s) | 141, 275 |
| BsiEI | CGRYCG | 1 cut(s) | 26 |
| BsiSI | CCGG | 1 cut(s) | 414 |
| BsnI | GGCC | 2 cut(s) | 141, 275 |
| Bsp143I | GATC | 3 cut(s) | 121, 217, 306 |
| BspACI | CCGC | 1 cut(s) | 160 |
| BspANI | GGCC | 2 cut(s) | 141, 275 |
| BspHI | TCATGA | 1 cut(s) | 220 |
| BspPI | GGATC | 1 cut(s) | 314 |
| BspTI | CTTAAG | 1 cut(s) | 263 |
| BsrFI | RCCGGY | 1 cut(s) | 413 |
| BssAI | RCCGGY | 1 cut(s) | 413 |
| BssMI | GATC | 3 cut(s) | 121, 217, 306 |
| BstAFI | CTTAAG | 1 cut(s) | 263 |
| BstC8I | GCNNGC | 1 cut(s) | 415 |
| BstDEI | CTNAG | 1 cut(s) | 325 |
| BstF5I | GGATG | 3 cut(s) | 307, 312, 382 |
| BstH2I | RGCGCY | 1 cut(s) | 120 |
| BstHHI | GCGC | 1 cut(s) | 119 |
| BstKTI | GATC | 3 cut(s) | 124, 220, 309 |
| BstMBI | GATC | 3 cut(s) | 121, 217, 306 |
| BstMCI | CGRYCG | 1 cut(s) | 26 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 281 |
| BstV1I | GCAGC | 2 cut(s) | 225, 404 |
| Bsu36I | CCTNAGG | 1 cut(s) | 325 |
| BsuRI | GGCC | 2 cut(s) | 141, 275 |
| BtsCI | GGATG | 3 cut(s) | 307, 312, 382 |
| Cac8I | GCNNGC | 1 cut(s) | 415 |
| CciI | TCATGA | 1 cut(s) | 220 |
| CfoI | GCGC | 1 cut(s) | 119 |
| Cfr10I | RCCGGY | 1 cut(s) | 413 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 231, 266 |
| CviAII | CATG | 4 cut(s) | 221, 279, 388, 397 |
| CviJI | RGCY | 8 cut(s) | 9, 76, 109, 141, 238, 275, 284, 417 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 76, 109, 141, 238, 275, 284, 417 |
| DdeI | CTNAG | 1 cut(s) | 325 |
| DpnI | GATC | 3 cut(s) | 123, 219, 308 |
| DpnII | GATC | 3 cut(s) | 121, 217, 306 |
| DraI | TTTAAA | 1 cut(s) | 454 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eco32I | GATATC | 1 cut(s) | 347 |
| Eco57I | CTGAAG | 1 cut(s) | 352 |
| Eco81I | CCTNAGG | 1 cut(s) | 325 |
| EcoRV | GATATC | 1 cut(s) | 347 |
| EcoT22I | ATGCAT | 1 cut(s) | 450 |
| FaeI | CATG | 4 cut(s) | 224, 282, 391, 400 |
| FatI | CATG | 4 cut(s) | 220, 278, 387, 396 |
| FauI | CCCGC | 1 cut(s) | 153 |
| FbaI | TGATCA | 1 cut(s) | 217 |
| FblI | GTMKAC | 1 cut(s) | 22 |
| Fnu4HI | GCNGC | 2 cut(s) | 239, 418 |
| FokI | GGATG | 3 cut(s) | 299, 314, 389 |
| Fsp4HI | GCNGC | 2 cut(s) | 239, 418 |
| GlaI | GCGC | 1 cut(s) | 118 |
| GluI | GCNGC | 2 cut(s) | 239, 418 |
| HaeII | RGCGCY | 1 cut(s) | 120 |
| HaeIII | GGCC | 2 cut(s) | 141, 275 |
| HapII | CCGG | 1 cut(s) | 414 |
| HhaI | GCGC | 1 cut(s) | 119 |
| Hin1II | CATG | 4 cut(s) | 224, 282, 391, 400 |
| Hin6I | GCGC | 1 cut(s) | 117 |
| HinP1I | GCGC | 1 cut(s) | 117 |
| HincII | GTYRAC | 2 cut(s) | 23, 94 |
| HindII | GTYRAC | 2 cut(s) | 23, 94 |
| HpaII | CCGG | 1 cut(s) | 414 |
| HphI | GGTGA | 3 cut(s) | 28, 48, 301 |
| Hpy166II | GTNNAC | 2 cut(s) | 23, 94 |
| Hpy188I | TCNGA | 1 cut(s) | 371 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| Hpy8I | GTNNAC | 2 cut(s) | 23, 94 |
| Hpy99I | CGWCG | 1 cut(s) | 24 |
| HpyAV | CCTTC | 4 cut(s) | 187, 292, 366, 394 |
| HpyCH4IV | ACGT | 2 cut(s) | 19, 269 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 420, 448 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 281 |
| HpyF3I | CTNAG | 1 cut(s) | 325 |
| HpySE526I | ACGT | 2 cut(s) | 19, 269 |
| Hsp92II | CATG | 4 cut(s) | 224, 282, 391, 400 |
| HspAI | GCGC | 1 cut(s) | 117 |
| KroI | GCCGGC | 1 cut(s) | 413 |
| KroNI | GCCGGC | 1 cut(s) | 415 |
| Ksp22I | TGATCA | 1 cut(s) | 217 |
| Kzo9I | GATC | 3 cut(s) | 121, 217, 306 |
| LpnPI | CCDG | 2 cut(s) | 58, 427 |
| Lsp1109I | GCAGC | 2 cut(s) | 225, 404 |
| MaeII | ACGT | 2 cut(s) | 19, 269 |
| MalI | GATC | 3 cut(s) | 123, 219, 308 |
| MboI | GATC | 3 cut(s) | 121, 217, 306 |
| MboII | GAAGA | 1 cut(s) | 358 |
| MlsI | TGGCCA | 1 cut(s) | 275 |
| MluCI | AATT | 4 cut(s) | 65, 149, 247, 335 |
| MluNI | TGGCCA | 1 cut(s) | 275 |
| MnlI | CCTC | 6 cut(s) | 174, 177, 264, 325, 397, 429 |
| Mox20I | TGGCCA | 1 cut(s) | 275 |
| Mph1103I | ATGCAT | 1 cut(s) | 450 |
| MroNI | GCCGGC | 1 cut(s) | 413 |
| MscI | TGGCCA | 1 cut(s) | 275 |
| MseI | TTAA | 3 cut(s) | 171, 264, 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 425 |
| Msp20I | TGGCCA | 1 cut(s) | 275 |
| MspA1I | CMGCKG | 1 cut(s) | 160 |
| MspCI | CTTAAG | 1 cut(s) | 263 |
| MspI | CCGG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 281 |
| NaeI | GCCGGC | 1 cut(s) | 415 |
| NdeII | GATC | 3 cut(s) | 121, 217, 306 |
| NgoMIV | GCCGGC | 1 cut(s) | 413 |
| NlaIII | CATG | 4 cut(s) | 224, 282, 391, 400 |
| NsiI | ATGCAT | 1 cut(s) | 450 |
| PagI | TCATGA | 1 cut(s) | 220 |
| PdiI | GCCGGC | 1 cut(s) | 415 |
| PkrI | GCNGC | 2 cut(s) | 240, 419 |
| RseI | CAYNNNNRTG | 1 cut(s) | 425 |
| SalI | GTCGAC | 1 cut(s) | 21 |
| SaqAI | TTAA | 3 cut(s) | 171, 264, 453 |
| SatI | GCNGC | 2 cut(s) | 239, 418 |
| Sau3AI | GATC | 3 cut(s) | 121, 217, 306 |
| SetI | ASST | 9 cut(s) | 22, 111, 177, 240, 272, 326, 360, 408, 440 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 425 |
| SmlI | CTYRAG | 2 cut(s) | 77, 263 |
| SmoI | CTYRAG | 2 cut(s) | 77, 263 |
| Sse9I | AATT | 4 cut(s) | 65, 149, 247, 335 |
| SsiI | CCGC | 1 cut(s) | 160 |
| TaiI | ACGT | 2 cut(s) | 22, 272 |
| TaqI | TCGA | 1 cut(s) | 22 |
| TaqII | GACCGA | 1 cut(s) | 40 |
| TasI | AATT | 4 cut(s) | 65, 149, 247, 335 |
| Tru1I | TTAA | 3 cut(s) | 171, 264, 453 |
| Tru9I | TTAA | 3 cut(s) | 171, 264, 453 |
| TseI | GCWGC | 2 cut(s) | 238, 417 |
| TspDTI | ATGAA | 1 cut(s) | 413 |
| TspGWI | ACGGA | 1 cut(s) | 77 |
| Vha464I | CTTAAG | 1 cut(s) | 263 |
| XapI | RAATTY | 2 cut(s) | 65, 149 |
| XmiI | GTMKAC | 1 cut(s) | 22 |
| Zsp2I | ATGCAT | 1 cut(s) | 450 |