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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 229 |
| AccB1I | GGYRCC | 1 cut(s) | 229 |
| AcoI | YGGCCR | 2 cut(s) | 236, 451 |
| AcsI | RAATTY | 1 cut(s) | 364 |
| AcuI | CTGAAG | 1 cut(s) | 462 |
| AfaI | GTAC | 3 cut(s) | 3, 231, 303 |
| AgsI | TTSAA | 2 cut(s) | 406, 431 |
| AhlI | ACTAGT | 1 cut(s) | 17 |
| AluBI | AGCT | 3 cut(s) | 59, 247, 353 |
| AluI | AGCT | 3 cut(s) | 59, 247, 353 |
| Alw21I | GWGCWC | 2 cut(s) | 460, 492 |
| Alw26I | GTCTC | 2 cut(s) | 8, 148 |
| Alw44I | GTGCAC | 2 cut(s) | 456, 488 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 146 |
| AoxI | GGCC | 3 cut(s) | 213, 236, 451 |
| ApaLI | GTGCAC | 2 cut(s) | 456, 488 |
| ApeKI | GCWGC | 1 cut(s) | 350 |
| ApoI | RAATTY | 1 cut(s) | 364 |
| Asp718I | GGTACC | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 4 cut(s) | 200, 252, 404, 415 |
| BaeGI | GKGCMC | 2 cut(s) | 460, 492 |
| BanI | GGYRCC | 1 cut(s) | 229 |
| BbsI | GAAGAC | 1 cut(s) | 315 |
| Bbv12I | GWGCWC | 2 cut(s) | 460, 492 |
| BbvI | GCAGC | 1 cut(s) | 362 |
| BccI | CCATC | 1 cut(s) | 67 |
| BceAI | ACGGC | 2 cut(s) | 438, 494 |
| BclI | TGATCA | 1 cut(s) | 46 |
| BcoDI | GTCTC | 2 cut(s) | 8, 148 |
| BcuI | ACTAGT | 1 cut(s) | 17 |
| BfaI | CTAG | 2 cut(s) | 18, 116 |
| BisI | GCNGC | 1 cut(s) | 351 |
| BlsI | GCNGC | 1 cut(s) | 352 |
| BmiI | GGNNCC | 1 cut(s) | 231 |
| BmrI | ACTGGG | 1 cut(s) | 528 |
| BmuI | ACTGGG | 1 cut(s) | 528 |
| BpiI | GAAGAC | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 2 cut(s) | 216, 233 |
| Bse1I | ACTGG | 1 cut(s) | 523 |
| BseDI | CCNNGG | 2 cut(s) | 216, 233 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseMII | CTCAG | 2 cut(s) | 267, 312 |
| BseNI | ACTGG | 1 cut(s) | 523 |
| BseRI | GAGGAG | 1 cut(s) | 173 |
| BseSI | GKGCMC | 2 cut(s) | 460, 492 |
| BseXI | GCAGC | 1 cut(s) | 362 |
| BshFI | GGCC | 3 cut(s) | 215, 238, 453 |
| BshNI | GGYRCC | 1 cut(s) | 229 |
| BsiHKAI | GWGCWC | 2 cut(s) | 460, 492 |
| BsmAI | GTCTC | 2 cut(s) | 8, 148 |
| BsnI | GGCC | 3 cut(s) | 215, 238, 453 |
| Bsp1286I | GDGCHC | 2 cut(s) | 460, 492 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| Bsp19I | CCATGG | 2 cut(s) | 216, 233 |
| BspANI | GGCC | 3 cut(s) | 215, 238, 453 |
| BspCNI | CTCAG | 2 cut(s) | 268, 313 |
| BspLI | GGNNCC | 1 cut(s) | 231 |
| BspT107I | GGYRCC | 1 cut(s) | 229 |
| BsrI | ACTGG | 1 cut(s) | 523 |
| BssECI | CCNNGG | 2 cut(s) | 216, 233 |
| BssMI | GATC | 1 cut(s) | 46 |
| BssT1I | CCWWGG | 2 cut(s) | 216, 233 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 205 |
| Bst6I | CTCTTC | 1 cut(s) | 278 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 381, 487 |
| BstC8I | GCNNGC | 1 cut(s) | 213 |
| BstDEI | CTNAG | 3 cut(s) | 169, 276, 321 |
| BstDSI | CCRYGG | 2 cut(s) | 216, 233 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 2 cut(s) | 8, 148 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 29, 244, 381, 487 |
| BstNSI | RCATGY | 2 cut(s) | 379, 388 |
| BstSLI | GKGCMC | 2 cut(s) | 460, 492 |
| BstV1I | GCAGC | 1 cut(s) | 362 |
| BstV2I | GAAGAC | 1 cut(s) | 315 |
| BsuRI | GGCC | 3 cut(s) | 215, 238, 453 |
| BtgI | CCRYGG | 2 cut(s) | 216, 233 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 66 |
| Cac8I | GCNNGC | 1 cut(s) | 213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 146 |
| Csp6I | GTAC | 3 cut(s) | 2, 230, 302 |
| CviAII | CATG | 6 cut(s) | 104, 217, 234, 376, 385, 505 |
| CviJI | RGCY | 9 cut(s) | 59, 215, 238, 247, 336, 353, 419, 440, 453 |
| CviKI_1 | RGCY | 9 cut(s) | 59, 215, 238, 247, 336, 353, 419, 440, 453 |
| CviQI | GTAC | 3 cut(s) | 2, 230, 302 |
| DdeI | CTNAG | 3 cut(s) | 169, 276, 321 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 2 cut(s) | 236, 451 |
| Eam1104I | CTCTTC | 1 cut(s) | 278 |
| EarI | CTCTTC | 1 cut(s) | 278 |
| Eco130I | CCWWGG | 2 cut(s) | 216, 233 |
| Eco57I | CTGAAG | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 2 cut(s) | 216, 233 |
| ErhI | CCWWGG | 2 cut(s) | 216, 233 |
| FaeI | CATG | 6 cut(s) | 107, 220, 237, 379, 388, 508 |
| FatI | CATG | 6 cut(s) | 103, 216, 233, 375, 384, 504 |
| FbaI | TGATCA | 1 cut(s) | 46 |
| Fnu4HI | GCNGC | 1 cut(s) | 351 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 1 cut(s) | 351 |
| FspBI | CTAG | 2 cut(s) | 18, 116 |
| GluI | GCNGC | 1 cut(s) | 351 |
| HaeIII | GGCC | 3 cut(s) | 215, 238, 453 |
| Hin1II | CATG | 6 cut(s) | 107, 220, 237, 379, 388, 508 |
| HinfI | GANTC | 1 cut(s) | 402 |
| HphI | GGTGA | 4 cut(s) | 200, 252, 404, 415 |
| Hpy166II | GTNNAC | 2 cut(s) | 458, 490 |
| Hpy188I | TCNGA | 2 cut(s) | 322, 401 |
| Hpy8I | GTNNAC | 2 cut(s) | 458, 490 |
| HpyAV | CCTTC | 1 cut(s) | 409 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 205 |
| HpyCH4V | TGCA | 6 cut(s) | 152, 384, 458, 490, 500, 528 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 29, 244, 381, 487 |
| HpyF3I | CTNAG | 3 cut(s) | 169, 276, 321 |
| Hsp92II | CATG | 6 cut(s) | 107, 220, 237, 379, 388, 508 |
| KpnI | GGTACC | 1 cut(s) | 233 |
| Ksp22I | TGATCA | 1 cut(s) | 46 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| LpnPI | CCDG | 6 cut(s) | 195, 197, 276, 288, 290, 504 |
| Lsp1109I | GCAGC | 1 cut(s) | 362 |
| MaeI | CTAG | 2 cut(s) | 18, 116 |
| MaeIII | GTNAC | 1 cut(s) | 258 |
| MalI | GATC | 1 cut(s) | 48 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 3 cut(s) | 280, 295, 320 |
| MfeI | CAATTG | 1 cut(s) | 153 |
| MhlI | GDGCHC | 2 cut(s) | 460, 492 |
| MluCI | AATT | 6 cut(s) | 127, 153, 364, 432, 495, 512 |
| MmeI | TCCRAC | 1 cut(s) | 379 |
| MnlI | CCTC | 7 cut(s) | 100, 151, 273, 316, 388, 430, 537 |
| MseI | TTAA | 1 cut(s) | 515 |
| MslI | CAYNNNNRTG | 1 cut(s) | 71 |
| MunI | CAATTG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 29, 244, 381, 487 |
| NcoI | CCATGG | 2 cut(s) | 216, 233 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIII | CATG | 6 cut(s) | 107, 220, 237, 379, 388, 508 |
| NlaIV | GGNNCC | 1 cut(s) | 231 |
| NmuCI | GTSAC | 1 cut(s) | 258 |
| NspI | RCATGY | 2 cut(s) | 379, 388 |
| PfeI | GAWTC | 1 cut(s) | 402 |
| PkrI | GCNGC | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 1 cut(s) | 231 |
| PstNI | CAGNNNCTG | 1 cut(s) | 146 |
| RsaI | GTAC | 3 cut(s) | 3, 231, 303 |
| RsaNI | GTAC | 3 cut(s) | 2, 230, 302 |
| RseI | CAYNNNNRTG | 1 cut(s) | 71 |
| SaqAI | TTAA | 1 cut(s) | 515 |
| SatI | GCNGC | 1 cut(s) | 351 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| SduI | GDGCHC | 2 cut(s) | 460, 492 |
| SetI | ASST | 8 cut(s) | 40, 61, 249, 265, 277, 355, 399, 548 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 71 |
| SpeI | ACTAGT | 1 cut(s) | 17 |
| Sse9I | AATT | 6 cut(s) | 127, 153, 364, 432, 495, 512 |
| SspMI | CTAG | 2 cut(s) | 18, 116 |
| StyI | CCWWGG | 2 cut(s) | 216, 233 |
| TaaI | ACNGT | 2 cut(s) | 70, 205 |
| TasI | AATT | 6 cut(s) | 127, 153, 364, 432, 495, 512 |
| TfiI | GAWTC | 1 cut(s) | 402 |
| Tru1I | TTAA | 1 cut(s) | 515 |
| Tru9I | TTAA | 1 cut(s) | 515 |
| TscAI | CASTG | 1 cut(s) | 73 |
| TseFI | GTSAC | 1 cut(s) | 258 |
| TseI | GCWGC | 1 cut(s) | 350 |
| Tsp45I | GTSAC | 1 cut(s) | 258 |
| TspDTI | ATGAA | 3 cut(s) | 207, 357, 521 |
| TspGWI | ACGGA | 2 cut(s) | 165, 475 |
| TspRI | CASTG | 1 cut(s) | 73 |
| VneI | GTGCAC | 2 cut(s) | 456, 488 |
| XapI | RAATTY | 1 cut(s) | 364 |
| XceI | RCATGY | 2 cut(s) | 379, 388 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 101 |
| XspI | CTAG | 2 cut(s) | 18, 116 |