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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 571 |
| AciI | CCGC | 1 cut(s) | 503 |
| AcsI | RAATTY | 1 cut(s) | 590 |
| AfaI | GTAC | 1 cut(s) | 144 |
| AgeI | ACCGGT | 1 cut(s) | 368 |
| AgsI | TTSAA | 3 cut(s) | 131, 460, 485 |
| AluBI | AGCT | 6 cut(s) | 56, 125, 191, 209, 381, 427 |
| AluI | AGCT | 6 cut(s) | 56, 125, 191, 209, 381, 427 |
| Alw26I | GTCTC | 2 cut(s) | 128, 485 |
| AoxI | GGCC | 1 cut(s) | 342 |
| ApeKI | GCWGC | 3 cut(s) | 191, 311, 467 |
| ApoI | RAATTY | 1 cut(s) | 590 |
| AsiGI | ACCGGT | 1 cut(s) | 368 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 603 |
| AspS9I | GGNCC | 1 cut(s) | 343 |
| AsuHPI | GGTGA | 1 cut(s) | 428 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 126, 159 |
| BbvI | GCAGC | 3 cut(s) | 178, 323, 454 |
| BciVI | GTATCC | 1 cut(s) | 292 |
| BcoDI | GTCTC | 2 cut(s) | 128, 485 |
| BfaI | CTAG | 1 cut(s) | 432 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BfuI | GTATCC | 1 cut(s) | 292 |
| BisI | GCNGC | 3 cut(s) | 192, 312, 468 |
| BlpI | GCTNAGC | 1 cut(s) | 165 |
| BlsI | GCNGC | 3 cut(s) | 193, 313, 469 |
| BmgT120I | GGNCC | 1 cut(s) | 343 |
| BmiI | GGNNCC | 2 cut(s) | 30, 345 |
| BmsI | GCATC | 3 cut(s) | 163, 272, 545 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 229, 261 |
| BpmI | CTGGAG | 1 cut(s) | 195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 165 |
| BsaAI | YACGTR | 1 cut(s) | 323 |
| BsaWI | WCCGGW | 1 cut(s) | 368 |
| Bse118I | RCCGGY | 1 cut(s) | 368 |
| Bse1I | ACTGG | 1 cut(s) | 608 |
| Bse3DI | GCAATG | 1 cut(s) | 83 |
| BseGI | GGATG | 4 cut(s) | 81, 263, 484, 556 |
| BseMI | GCAATG | 1 cut(s) | 83 |
| BseMII | CTCAG | 1 cut(s) | 414 |
| BseNI | ACTGG | 1 cut(s) | 608 |
| BseRI | GAGGAG | 1 cut(s) | 503 |
| BseXI | GCAGC | 3 cut(s) | 178, 323, 454 |
| BsgI | GTGCAG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 344 |
| BshTI | ACCGGT | 1 cut(s) | 368 |
| BsiSI | CCGG | 1 cut(s) | 369 |
| BsmAI | GTCTC | 2 cut(s) | 128, 485 |
| BsnI | GGCC | 1 cut(s) | 344 |
| Bsp143I | GATC | 1 cut(s) | 108 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 165 |
| BspACI | CCGC | 1 cut(s) | 503 |
| BspANI | GGCC | 1 cut(s) | 344 |
| BspCNI | CTCAG | 1 cut(s) | 415 |
| BspLI | GGNNCC | 2 cut(s) | 30, 345 |
| BsrDI | GCAATG | 1 cut(s) | 83 |
| BsrFI | RCCGGY | 1 cut(s) | 368 |
| BsrI | ACTGG | 1 cut(s) | 608 |
| BssAI | RCCGGY | 1 cut(s) | 368 |
| BssMI | GATC | 1 cut(s) | 108 |
| Bst4CI | ACNGT | 1 cut(s) | 439 |
| Bst6I | CTCTTC | 3 cut(s) | 126, 348, 480 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 317 |
| BstBAI | YACGTR | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 1 cut(s) | 429 |
| BstDEI | CTNAG | 5 cut(s) | 71, 165, 252, 377, 423 |
| BstF5I | GGATG | 4 cut(s) | 81, 263, 484, 556 |
| BstKTI | GATC | 1 cut(s) | 111 |
| BstMAI | GTCTC | 2 cut(s) | 128, 485 |
| BstMBI | GATC | 1 cut(s) | 108 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 317 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 3 cut(s) | 178, 323, 454 |
| BsuI | GTATCC | 1 cut(s) | 292 |
| BsuRI | GGCC | 1 cut(s) | 344 |
| BtsCI | GGATG | 4 cut(s) | 81, 263, 484, 556 |
| Cac8I | GCNNGC | 1 cut(s) | 429 |
| Cfr10I | RCCGGY | 1 cut(s) | 368 |
| Cfr13I | GGNCC | 1 cut(s) | 343 |
| Csp6I | GTAC | 1 cut(s) | 143 |
| CspAI | ACCGGT | 1 cut(s) | 368 |
| CviAII | CATG | 1 cut(s) | 25 |
| CviJI | RGCY | 9 cut(s) | 29, 50, 56, 125, 191, 209, 344, 381, 427 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 50, 56, 125, 191, 209, 344, 381, 427 |
| CviQI | GTAC | 1 cut(s) | 143 |
| DdeI | CTNAG | 5 cut(s) | 71, 165, 252, 377, 423 |
| DpnI | GATC | 1 cut(s) | 110 |
| DpnII | GATC | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 3 cut(s) | 126, 348, 480 |
| EarI | CTCTTC | 3 cut(s) | 126, 348, 480 |
| EcoO109I | RGGNCCY | 1 cut(s) | 343 |
| FaeI | CATG | 1 cut(s) | 28 |
| FaiI | YATR | 6 cut(s) | 26, 59, 316, 318, 407, 500 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 440, 472 |
| FatI | CATG | 1 cut(s) | 24 |
| FauNDI | CATATG | 1 cut(s) | 316 |
| FblI | GTMKAC | 1 cut(s) | 571 |
| Fnu4HI | GCNGC | 3 cut(s) | 192, 312, 468 |
| FokI | GGATG | 4 cut(s) | 88, 250, 491, 563 |
| Fsp4HI | GCNGC | 3 cut(s) | 192, 312, 468 |
| FspBI | CTAG | 1 cut(s) | 432 |
| GluI | GCNGC | 3 cut(s) | 192, 312, 468 |
| GsuI | CTGGAG | 1 cut(s) | 195 |
| HaeIII | GGCC | 1 cut(s) | 344 |
| HapII | CCGG | 1 cut(s) | 369 |
| Hin1II | CATG | 1 cut(s) | 28 |
| HinfI | GANTC | 1 cut(s) | 238 |
| HpaII | CCGG | 1 cut(s) | 369 |
| HphI | GGTGA | 1 cut(s) | 428 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 374, 572, 613 |
| Hpy188III | TCNNGA | 5 cut(s) | 222, 442, 457, 509, 583 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 374, 572, 613 |
| HpyAV | CCTTC | 5 cut(s) | 73, 301, 403, 644, 648 |
| HpyCH4III | ACNGT | 1 cut(s) | 439 |
| HpyCH4IV | ACGT | 1 cut(s) | 322 |
| HpyCH4V | TGCA | 7 cut(s) | 88, 176, 194, 263, 320, 470, 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 317 |
| HpyF3I | CTNAG | 5 cut(s) | 71, 165, 252, 377, 423 |
| HpySE526I | ACGT | 1 cut(s) | 322 |
| Hsp92II | CATG | 1 cut(s) | 28 |
| Kzo9I | GATC | 1 cut(s) | 108 |
| LmnI | GCTCC | 2 cut(s) | 34, 214 |
| LpnPI | CCDG | 8 cut(s) | 5, 135, 225, 360, 382, 494, 580, 621 |
| Lsp1109I | GCAGC | 3 cut(s) | 178, 323, 454 |
| LweI | GCATC | 3 cut(s) | 163, 272, 545 |
| MaeI | CTAG | 1 cut(s) | 432 |
| MaeII | ACGT | 1 cut(s) | 322 |
| MalI | GATC | 1 cut(s) | 110 |
| MboI | GATC | 1 cut(s) | 108 |
| MboII | GAAGA | 5 cut(s) | 143, 365, 457, 497, 611 |
| MluCI | AATT | 3 cut(s) | 518, 543, 590 |
| MlyI | GAGTC | 1 cut(s) | 247 |
| MmeI | TCCRAC | 2 cut(s) | 63, 310 |
| MnlI | CCTC | 4 cut(s) | 349, 481, 541, 585 |
| MroXI | GAANNNNTTC | 1 cut(s) | 603 |
| MseI | TTAA | 2 cut(s) | 452, 661 |
| MspA1I | CMGCKG | 1 cut(s) | 125 |
| MspI | CCGG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 317 |
| NdeI | CATATG | 1 cut(s) | 316 |
| NdeII | GATC | 1 cut(s) | 108 |
| NlaIII | CATG | 1 cut(s) | 28 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 345 |
| NmeAIII | GCCGAG | 1 cut(s) | 367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 603 |
| PinAI | ACCGGT | 1 cut(s) | 368 |
| PkrI | GCNGC | 3 cut(s) | 193, 313, 469 |
| PleI | GAGTC | 1 cut(s) | 246 |
| PpsI | GAGTC | 1 cut(s) | 246 |
| Ppu21I | YACGTR | 1 cut(s) | 323 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 345 |
| PspPI | GGNCC | 1 cut(s) | 343 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RsaI | GTAC | 1 cut(s) | 144 |
| RsaNI | GTAC | 1 cut(s) | 143 |
| SaqAI | TTAA | 2 cut(s) | 452, 661 |
| SatI | GCNGC | 3 cut(s) | 192, 312, 468 |
| Sau3AI | GATC | 1 cut(s) | 108 |
| Sau96I | GGNCC | 1 cut(s) | 343 |
| SchI | GAGTC | 1 cut(s) | 247 |
| SfaNI | GCATC | 3 cut(s) | 163, 272, 545 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| Sse9I | AATT | 3 cut(s) | 518, 543, 590 |
| SsiI | CCGC | 1 cut(s) | 503 |
| SspMI | CTAG | 1 cut(s) | 432 |
| TaaI | ACNGT | 1 cut(s) | 439 |
| TaiI | ACGT | 1 cut(s) | 325 |
| TasI | AATT | 3 cut(s) | 518, 543, 590 |
| Tru1I | TTAA | 2 cut(s) | 452, 661 |
| Tru9I | TTAA | 2 cut(s) | 452, 661 |
| TseI | GCWGC | 3 cut(s) | 191, 311, 467 |
| TspDTI | ATGAA | 4 cut(s) | 92, 107, 366, 422 |
| XapI | RAATTY | 1 cut(s) | 590 |
| XmiI | GTMKAC | 1 cut(s) | 571 |
| XmnI | GAANNNNTTC | 1 cut(s) | 603 |
| XspI | CTAG | 1 cut(s) | 432 |