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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 451 |
| AccIII | TCCGGA | 1 cut(s) | 220 |
| AciI | CCGC | 5 cut(s) | 126, 241, 451, 464, 478 |
| AcoI | YGGCCR | 1 cut(s) | 479 |
| AcuI | CTGAAG | 1 cut(s) | 201 |
| AfeI | AGCGCT | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 227, 474 |
| AgsI | TTSAA | 4 cut(s) | 103, 148, 280, 499 |
| AluBI | AGCT | 3 cut(s) | 157, 172, 314 |
| AluI | AGCT | 3 cut(s) | 157, 172, 314 |
| Aor13HI | TCCGGA | 1 cut(s) | 220 |
| Aor51HI | AGCGCT | 1 cut(s) | 178 |
| AoxI | GGCC | 2 cut(s) | 465, 479 |
| AspLEI | GCGC | 1 cut(s) | 179 |
| AspS9I | GGNCC | 1 cut(s) | 466 |
| BccI | CCATC | 1 cut(s) | 86 |
| BfaI | CTAG | 3 cut(s) | 80, 392, 402 |
| BfoI | RGCGCY | 1 cut(s) | 180 |
| BisI | GCNGC | 2 cut(s) | 465, 479 |
| BlpI | GCTNAGC | 1 cut(s) | 173 |
| BlsI | GCNGC | 2 cut(s) | 466, 480 |
| BmgT120I | GGNCC | 1 cut(s) | 466 |
| BmiI | GGNNCC | 1 cut(s) | 77 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 173 |
| BsaWI | WCCGGW | 1 cut(s) | 220 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 20, 50, 243, 273 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 227, 474 |
| BseAI | TCCGGA | 1 cut(s) | 220 |
| BseGI | GGATG | 2 cut(s) | 97, 112 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 227, 474 |
| BseMII | CTCAG | 1 cut(s) | 24 |
| BseRI | GAGGAG | 6 cut(s) | 125, 365, 386, 410, 422, 461 |
| BsgI | GTGCAG | 1 cut(s) | 353 |
| BshFI | GGCC | 2 cut(s) | 467, 481 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BslFI | GGGAC | 1 cut(s) | 229 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 227, 474 |
| BsmFI | GGGAC | 1 cut(s) | 229 |
| BsnI | GGCC | 2 cut(s) | 467, 481 |
| Bsp13I | TCCGGA | 1 cut(s) | 220 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 173 |
| BspACI | CCGC | 5 cut(s) | 126, 241, 451, 464, 478 |
| BspANI | GGCC | 2 cut(s) | 467, 481 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspEI | TCCGGA | 1 cut(s) | 220 |
| BspLI | GGNNCC | 1 cut(s) | 77 |
| BsrBI | CCGCTC | 1 cut(s) | 451 |
| Bst4CI | ACNGT | 3 cut(s) | 52, 164, 319 |
| BstC8I | GCNNGC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 3 cut(s) | 33, 173, 326 |
| BstF5I | GGATG | 2 cut(s) | 97, 112 |
| BstH2I | RGCGCY | 1 cut(s) | 180 |
| BstHHI | GCGC | 1 cut(s) | 179 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 461, 487 |
| BsuRI | GGCC | 2 cut(s) | 467, 481 |
| BtsCI | GGATG | 2 cut(s) | 97, 112 |
| BtsIMutI | CAGTG | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 1 cut(s) | 453 |
| CfoI | GCGC | 1 cut(s) | 179 |
| Cfr13I | GGNCC | 1 cut(s) | 466 |
| CviAII | CATG | 1 cut(s) | 227 |
| CviJI | RGCY | 8 cut(s) | 32, 157, 172, 314, 401, 455, 467, 481 |
| CviKI_1 | RGCY | 8 cut(s) | 32, 157, 172, 314, 401, 455, 467, 481 |
| DdeI | CTNAG | 3 cut(s) | 33, 173, 326 |
| EaeI | YGGCCR | 1 cut(s) | 479 |
| Eco47III | AGCGCT | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 1 cut(s) | 201 |
| FaeI | CATG | 1 cut(s) | 230 |
| FaiI | YATR | 7 cut(s) | 18, 69, 228, 294, 308, 458, 472 |
| FaqI | GGGAC | 1 cut(s) | 229 |
| FatI | CATG | 1 cut(s) | 226 |
| FauI | CCCGC | 2 cut(s) | 234, 444 |
| Fnu4HI | GCNGC | 2 cut(s) | 465, 479 |
| FokI | GGATG | 2 cut(s) | 104, 119 |
| Fsp4HI | GCNGC | 2 cut(s) | 465, 479 |
| FspBI | CTAG | 3 cut(s) | 80, 392, 402 |
| GlaI | GCGC | 1 cut(s) | 178 |
| GluI | GCNGC | 2 cut(s) | 465, 479 |
| HaeII | RGCGCY | 1 cut(s) | 180 |
| HaeIII | GGCC | 2 cut(s) | 467, 481 |
| HapII | CCGG | 1 cut(s) | 221 |
| HhaI | GCGC | 1 cut(s) | 179 |
| Hin1II | CATG | 1 cut(s) | 230 |
| Hin6I | GCGC | 1 cut(s) | 177 |
| HinP1I | GCGC | 1 cut(s) | 177 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 2 cut(s) | 113, 217 |
| HpaII | CCGG | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 1 cut(s) | 323 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| HpyAV | CCTTC | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 3 cut(s) | 52, 164, 319 |
| HpyCH4V | TGCA | 3 cut(s) | 20, 334, 443 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 461, 487 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 173, 326 |
| Hsp92II | CATG | 1 cut(s) | 230 |
| HspAI | GCGC | 1 cut(s) | 177 |
| Kpn2I | TCCGGA | 1 cut(s) | 220 |
| LmnI | GCTCC | 2 cut(s) | 223, 448 |
| LpnPI | CCDG | 4 cut(s) | 6, 19, 234, 403 |
| MaeI | CTAG | 3 cut(s) | 80, 392, 402 |
| MaeIII | GTNAC | 2 cut(s) | 82, 259 |
| MbiI | CCGCTC | 1 cut(s) | 451 |
| MboII | GAAGA | 2 cut(s) | 373, 397 |
| MluCI | AATT | 1 cut(s) | 435 |
| MlyI | GAGTC | 2 cut(s) | 122, 211 |
| MmeI | TCCRAC | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 220 |
| MseI | TTAA | 1 cut(s) | 200 |
| MspA1I | CMGCKG | 1 cut(s) | 128 |
| MspI | CCGG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 461, 487 |
| NlaIII | CATG | 1 cut(s) | 230 |
| NlaIV | GGNNCC | 1 cut(s) | 77 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| PkrI | GCNGC | 2 cut(s) | 466, 480 |
| PleI | GAGTC | 2 cut(s) | 121, 211 |
| PpsI | GAGTC | 2 cut(s) | 121, 211 |
| PspN4I | GGNNCC | 1 cut(s) | 77 |
| PspPI | GGNCC | 1 cut(s) | 466 |
| SaqAI | TTAA | 1 cut(s) | 200 |
| SatI | GCNGC | 2 cut(s) | 465, 479 |
| Sau96I | GGNCC | 1 cut(s) | 466 |
| SchI | GAGTC | 2 cut(s) | 122, 211 |
| SetI | ASST | 6 cut(s) | 63, 159, 174, 256, 285, 316 |
| Sse9I | AATT | 1 cut(s) | 435 |
| SsiI | CCGC | 5 cut(s) | 126, 241, 451, 464, 478 |
| SspI | AATATT | 1 cut(s) | 342 |
| SspMI | CTAG | 3 cut(s) | 80, 392, 402 |
| TaaI | ACNGT | 3 cut(s) | 52, 164, 319 |
| TasI | AATT | 1 cut(s) | 435 |
| TauI | GCSGC | 2 cut(s) | 467, 481 |
| Tru1I | TTAA | 1 cut(s) | 200 |
| Tru9I | TTAA | 1 cut(s) | 200 |
| TscAI | CASTG | 1 cut(s) | 169 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspRI | CASTG | 1 cut(s) | 169 |
| XspI | CTAG | 3 cut(s) | 80, 392, 402 |