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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 42, 606 |
| Acc16I | TGCGCA | 1 cut(s) | 560 |
| Acc36I | ACCTGC | 1 cut(s) | 564 |
| Acc65I | GGTACC | 1 cut(s) | 15 |
| AccB1I | GGYRCC | 1 cut(s) | 15 |
| AccIII | TCCGGA | 1 cut(s) | 217 |
| AciI | CCGC | 6 cut(s) | 231, 248, 722, 771, 794, 844 |
| AclI | AACGTT | 1 cut(s) | 693 |
| AclWI | GGATC | 2 cut(s) | 209, 581 |
| AcsI | RAATTY | 3 cut(s) | 358, 536, 662 |
| AfaI | GTAC | 1 cut(s) | 17 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 562 |
| AflIII | ACRYGT | 1 cut(s) | 447 |
| AgsI | TTSAA | 2 cut(s) | 34, 669 |
| AjnI | CCWGG | 2 cut(s) | 154, 855 |
| AluBI | AGCT | 1 cut(s) | 739 |
| AluI | AGCT | 1 cut(s) | 739 |
| Alw26I | GTCTC | 1 cut(s) | 761 |
| AlwI | GGATC | 2 cut(s) | 209, 581 |
| Ama87I | CYCGRG | 1 cut(s) | 184 |
| Aor13HI | TCCGGA | 1 cut(s) | 217 |
| AoxI | GGCC | 3 cut(s) | 117, 334, 951 |
| ApaI | GGGCCC | 1 cut(s) | 121 |
| ApeKI | GCWGC | 2 cut(s) | 483, 486 |
| ApoI | RAATTY | 3 cut(s) | 358, 536, 662 |
| Asp718I | GGTACC | 1 cut(s) | 15 |
| AspLEI | GCGC | 1 cut(s) | 561 |
| AspS9I | GGNCC | 3 cut(s) | 117, 118, 244 |
| AsuHPI | GGTGA | 1 cut(s) | 200 |
| AvaI | CYCGRG | 1 cut(s) | 184 |
| AvaII | GGWCC | 1 cut(s) | 244 |
| BaeGI | GKGCMC | 1 cut(s) | 121 |
| BanI | GGYRCC | 1 cut(s) | 15 |
| BanII | GRGCYC | 1 cut(s) | 121 |
| BbvI | GCAGC | 2 cut(s) | 495, 498 |
| BccI | CCATC | 4 cut(s) | 586, 598, 721, 757 |
| BceAI | ACGGC | 2 cut(s) | 694, 966 |
| BciT130I | CCWGG | 2 cut(s) | 156, 857 |
| BciVI | GTATCC | 1 cut(s) | 395 |
| BclI | TGATCA | 4 cut(s) | 25, 190, 511, 973 |
| BcoDI | GTCTC | 1 cut(s) | 761 |
| BfaI | CTAG | 2 cut(s) | 384, 988 |
| BfuAI | ACCTGC | 1 cut(s) | 564 |
| BfuI | GTATCC | 1 cut(s) | 395 |
| BisI | GCNGC | 4 cut(s) | 484, 487, 794, 845 |
| BlsI | GCNGC | 4 cut(s) | 485, 488, 795, 846 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 857 |
| Bme18I | GGWCC | 1 cut(s) | 244 |
| BmeT110I | CYCGRG | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 3 cut(s) | 117, 118, 244 |
| BmiI | GGNNCC | 3 cut(s) | 17, 119, 246 |
| BmrFI | CCNGG | 2 cut(s) | 156, 857 |
| BmsI | GCATC | 1 cut(s) | 575 |
| BpmI | CTGGAG | 1 cut(s) | 739 |
| BsaBI | GATNNNNATC | 2 cut(s) | 284, 510 |
| BsaI | GGTCTC | 1 cut(s) | 761 |
| BsaWI | WCCGGW | 1 cut(s) | 217 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 562 |
| Bse8I | GATNNNNATC | 2 cut(s) | 284, 510 |
| BseAI | TCCGGA | 1 cut(s) | 217 |
| BseBI | CCWGG | 2 cut(s) | 156, 857 |
| BseGI | GGATG | 2 cut(s) | 285, 749 |
| BseJI | GATNNNNATC | 2 cut(s) | 284, 510 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BseMII | CTCAG | 1 cut(s) | 754 |
| BseRI | GAGGAG | 1 cut(s) | 490 |
| BseSI | GKGCMC | 1 cut(s) | 121 |
| BseXI | GCAGC | 2 cut(s) | 495, 498 |
| BseYI | CCCAGC | 1 cut(s) | 921 |
| BshFI | GGCC | 3 cut(s) | 119, 336, 953 |
| BshNI | GGYRCC | 1 cut(s) | 15 |
| BsiHKCI | CYCGRG | 1 cut(s) | 184 |
| BsiSI | CCGG | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 562 |
| BsmAI | GTCTC | 1 cut(s) | 761 |
| BsmI | GAATGC | 1 cut(s) | 369 |
| BsnI | GGCC | 3 cut(s) | 119, 336, 953 |
| Bso31I | GGTCTC | 1 cut(s) | 761 |
| BsoBI | CYCGRG | 1 cut(s) | 184 |
| Bsp120I | GGGCCC | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp13I | TCCGGA | 1 cut(s) | 217 |
| Bsp143I | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| BspACI | CCGC | 6 cut(s) | 231, 248, 722, 771, 794, 844 |
| BspANI | GGCC | 3 cut(s) | 119, 336, 953 |
| BspCNI | CTCAG | 1 cut(s) | 753 |
| BspEI | TCCGGA | 1 cut(s) | 217 |
| BspLI | GGNNCC | 3 cut(s) | 17, 119, 246 |
| BspMI | ACCTGC | 1 cut(s) | 564 |
| BspPI | GGATC | 2 cut(s) | 209, 581 |
| BspT107I | GGYRCC | 1 cut(s) | 15 |
| BspTNI | GGTCTC | 1 cut(s) | 761 |
| BssMI | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 857 |
| Bst4CI | ACNGT | 5 cut(s) | 112, 602, 644, 654, 899 |
| Bst6I | CTCTTC | 1 cut(s) | 957 |
| BstC8I | GCNNGC | 5 cut(s) | 141, 367, 683, 732, 761 |
| BstDEI | CTNAG | 1 cut(s) | 740 |
| BstF5I | GGATG | 2 cut(s) | 285, 749 |
| BstHHI | GCGC | 1 cut(s) | 561 |
| BstKTI | GATC | 6 cut(s) | 28, 193, 217, 514, 589, 976 |
| BstMAI | GTCTC | 1 cut(s) | 761 |
| BstMBI | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 715, 736, 745 |
| BstNI | CCWGG | 2 cut(s) | 156, 857 |
| BstNSI | RCATGY | 1 cut(s) | 451 |
| BstSCI | CCNGG | 2 cut(s) | 154, 855 |
| BstSLI | GKGCMC | 1 cut(s) | 121 |
| BstV1I | GCAGC | 2 cut(s) | 495, 498 |
| BsuI | GTATCC | 1 cut(s) | 395 |
| BsuRI | GGCC | 3 cut(s) | 119, 336, 953 |
| BtgZI | GCGATG | 1 cut(s) | 699 |
| BtsCI | GGATG | 2 cut(s) | 285, 749 |
| BtsI | GCAGTG | 1 cut(s) | 939 |
| BtsIMutI | CAGTG | 2 cut(s) | 939, 983 |
| BveI | ACCTGC | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 5 cut(s) | 141, 367, 683, 732, 761 |
| CfoI | GCGC | 1 cut(s) | 561 |
| Cfr13I | GGNCC | 3 cut(s) | 117, 118, 244 |
| CseI | GACGC | 1 cut(s) | 267 |
| Csp6I | GTAC | 1 cut(s) | 16 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 379, 414 |
| CviAII | CATG | 6 cut(s) | 55, 169, 412, 421, 448, 562 |
| CviQI | GTAC | 1 cut(s) | 16 |
| DdeI | CTNAG | 1 cut(s) | 740 |
| DpnI | GATC | 6 cut(s) | 27, 192, 216, 513, 588, 975 |
| DpnII | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| Eam1104I | CTCTTC | 1 cut(s) | 957 |
| EarI | CTCTTC | 1 cut(s) | 957 |
| Eco24I | GRGCYC | 1 cut(s) | 121 |
| Eco31I | GGTCTC | 1 cut(s) | 761 |
| Eco32I | GATATC | 1 cut(s) | 430 |
| Eco47I | GGWCC | 1 cut(s) | 244 |
| Eco88I | CYCGRG | 1 cut(s) | 184 |
| EcoO109I | RGGNCCY | 1 cut(s) | 117 |
| EcoRII | CCWGG | 2 cut(s) | 154, 855 |
| EcoRV | GATATC | 1 cut(s) | 430 |
| EcoT38I | GRGCYC | 1 cut(s) | 121 |
| FaeI | CATG | 6 cut(s) | 58, 172, 415, 424, 451, 565 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 123, 155 |
| FatI | CATG | 6 cut(s) | 54, 168, 411, 420, 447, 561 |
| FauI | CCCGC | 1 cut(s) | 255 |
| FbaI | TGATCA | 4 cut(s) | 25, 190, 511, 973 |
| Fnu4HI | GCNGC | 4 cut(s) | 484, 487, 794, 845 |
| FokI | GGATG | 2 cut(s) | 292, 736 |
| FriOI | GRGCYC | 1 cut(s) | 121 |
| Fsp4HI | GCNGC | 4 cut(s) | 484, 487, 794, 845 |
| FspBI | CTAG | 2 cut(s) | 384, 988 |
| FspI | TGCGCA | 1 cut(s) | 560 |
| GlaI | GCGC | 1 cut(s) | 560 |
| GluI | GCNGC | 4 cut(s) | 484, 487, 794, 845 |
| GsaI | CCCAGC | 1 cut(s) | 925 |
| GsuI | CTGGAG | 1 cut(s) | 739 |
| HaeIII | GGCC | 3 cut(s) | 119, 336, 953 |
| HapII | CCGG | 1 cut(s) | 218 |
| HgaI | GACGC | 1 cut(s) | 267 |
| HhaI | GCGC | 1 cut(s) | 561 |
| Hin1II | CATG | 6 cut(s) | 58, 172, 415, 424, 451, 565 |
| Hin6I | GCGC | 1 cut(s) | 559 |
| HinP1I | GCGC | 1 cut(s) | 559 |
| HincII | GTYRAC | 2 cut(s) | 70, 547 |
| HindII | GTYRAC | 2 cut(s) | 70, 547 |
| HinfI | GANTC | 1 cut(s) | 914 |
| HpaII | CCGG | 1 cut(s) | 218 |
| HphI | GGTGA | 1 cut(s) | 200 |
| Hpy166II | GTNNAC | 2 cut(s) | 70, 547 |
| Hpy188I | TCNGA | 2 cut(s) | 637, 661 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| Hpy8I | GTNNAC | 2 cut(s) | 70, 547 |
| HpyAV | CCTTC | 2 cut(s) | 28, 84 |
| HpyCH4III | ACNGT | 5 cut(s) | 112, 602, 644, 654, 899 |
| HpyCH4IV | ACGT | 1 cut(s) | 693 |
| HpyCH4V | TGCA | 3 cut(s) | 62, 143, 981 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 715, 736, 745 |
| HpyF3I | CTNAG | 1 cut(s) | 740 |
| HpySE526I | ACGT | 1 cut(s) | 693 |
| Hsp92II | CATG | 6 cut(s) | 58, 172, 415, 424, 451, 565 |
| HspAI | GCGC | 1 cut(s) | 559 |
| Kpn2I | TCCGGA | 1 cut(s) | 217 |
| KpnI | GGTACC | 1 cut(s) | 19 |
| Ksp22I | TGATCA | 4 cut(s) | 25, 190, 511, 973 |
| Kzo9I | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| Lsp1109I | GCAGC | 2 cut(s) | 495, 498 |
| LweI | GCATC | 1 cut(s) | 575 |
| MaeI | CTAG | 2 cut(s) | 384, 988 |
| MaeII | ACGT | 1 cut(s) | 693 |
| MaeIII | GTNAC | 1 cut(s) | 899 |
| MalI | GATC | 6 cut(s) | 27, 192, 216, 513, 588, 975 |
| MboI | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| MboII | GAAGA | 1 cut(s) | 974 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MluCI | AATT | 3 cut(s) | 358, 536, 662 |
| MlyI | GAGTC | 1 cut(s) | 923 |
| MroI | TCCGGA | 1 cut(s) | 217 |
| MseI | TTAA | 2 cut(s) | 180, 203 |
| MspI | CCGG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 2 cut(s) | 156, 857 |
| Mva1269I | GAATGC | 1 cut(s) | 369 |
| MvaI | CCWGG | 2 cut(s) | 156, 857 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 715, 736, 745 |
| NdeII | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| NlaIII | CATG | 6 cut(s) | 58, 172, 415, 424, 451, 565 |
| NlaIV | GGNNCC | 3 cut(s) | 17, 119, 246 |
| NmeAIII | GCCGAG | 1 cut(s) | 598 |
| NsbI | TGCGCA | 1 cut(s) | 560 |
| NspI | RCATGY | 1 cut(s) | 451 |
| PciI | ACATGT | 1 cut(s) | 447 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 936 |
| PctI | GAATGC | 1 cut(s) | 369 |
| PflFI | GACNNNGTC | 1 cut(s) | 913 |
| PkrI | GCNGC | 4 cut(s) | 485, 488, 795, 846 |
| PleI | GAGTC | 1 cut(s) | 922 |
| PpsI | GAGTC | 1 cut(s) | 922 |
| PscI | ACATGT | 1 cut(s) | 447 |
| PsiI | TTATAA | 2 cut(s) | 42, 606 |
| Psp1406I | AACGTT | 1 cut(s) | 693 |
| Psp6I | CCWGG | 2 cut(s) | 154, 855 |
| PspFI | CCCAGC | 1 cut(s) | 921 |
| PspGI | CCWGG | 2 cut(s) | 154, 855 |
| PspN4I | GGNNCC | 3 cut(s) | 17, 119, 246 |
| PspOMI | GGGCCC | 1 cut(s) | 117 |
| PspPI | GGNCC | 3 cut(s) | 117, 118, 244 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 845, 877 |
| PsyI | GACNNNGTC | 1 cut(s) | 913 |
| RsaI | GTAC | 1 cut(s) | 17 |
| RsaNI | GTAC | 1 cut(s) | 16 |
| SaqAI | TTAA | 2 cut(s) | 180, 203 |
| SatI | GCNGC | 4 cut(s) | 484, 487, 794, 845 |
| Sau3AI | GATC | 6 cut(s) | 25, 190, 214, 511, 586, 973 |
| Sau96I | GGNCC | 3 cut(s) | 117, 118, 244 |
| SchI | GAGTC | 1 cut(s) | 923 |
| ScrFI | CCNGG | 2 cut(s) | 156, 857 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SetI | ASST | 7 cut(s) | 17, 21, 385, 558, 696, 741, 785 |
| SfaNI | GCATC | 1 cut(s) | 575 |
| SinI | GGWCC | 1 cut(s) | 244 |
| Sse9I | AATT | 3 cut(s) | 358, 536, 662 |
| SsiI | CCGC | 6 cut(s) | 231, 248, 722, 771, 794, 844 |
| SspMI | CTAG | 2 cut(s) | 384, 988 |
| StyD4I | CCNGG | 2 cut(s) | 154, 855 |
| TaaI | ACNGT | 5 cut(s) | 112, 602, 644, 654, 899 |
| TaiI | ACGT | 1 cut(s) | 696 |
| TaqI | TCGA | 1 cut(s) | 585 |
| TasI | AATT | 3 cut(s) | 358, 536, 662 |
| TauI | GCSGC | 2 cut(s) | 796, 847 |
| Tru1I | TTAA | 2 cut(s) | 180, 203 |
| Tru9I | TTAA | 2 cut(s) | 180, 203 |
| TscAI | CASTG | 2 cut(s) | 939, 983 |
| TseI | GCWGC | 2 cut(s) | 483, 486 |
| TspDTI | ATGAA | 3 cut(s) | 157, 479, 975 |
| TspGWI | ACGGA | 1 cut(s) | 926 |
| TspRI | CASTG | 2 cut(s) | 939, 983 |
| Tth111I | GACNNNGTC | 1 cut(s) | 913 |
| VpaK11BI | GGWCC | 1 cut(s) | 244 |
| XapI | RAATTY | 3 cut(s) | 358, 536, 662 |
| XceI | RCATGY | 1 cut(s) | 451 |
| XspI | CTAG | 2 cut(s) | 384, 988 |