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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 465 |
| Acc36I | ACCTGC | 2 cut(s) | 133, 226 |
| AciI | CCGC | 4 cut(s) | 59, 243, 263, 397 |
| AclWI | GGATC | 1 cut(s) | 535 |
| AcsI | RAATTY | 1 cut(s) | 277 |
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AfaI | GTAC | 1 cut(s) | 76 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 183, 519 |
| AflII | CTTAAG | 3 cut(s) | 46, 320, 392 |
| AluBI | AGCT | 1 cut(s) | 451 |
| AluI | AGCT | 1 cut(s) | 451 |
| Alw26I | GTCTC | 1 cut(s) | 94 |
| AlwI | GGATC | 1 cut(s) | 535 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 92 |
| ApeKI | GCWGC | 1 cut(s) | 272 |
| ApoI | RAATTY | 1 cut(s) | 277 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 323, 355 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 308 |
| AxyI | CCTNAGG | 1 cut(s) | 182 |
| BbvI | GCAGC | 1 cut(s) | 284 |
| BccI | CCATC | 3 cut(s) | 16, 371, 397 |
| BcoDI | GTCTC | 1 cut(s) | 94 |
| BfaI | CTAG | 2 cut(s) | 78, 426 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BfrI | CTTAAG | 3 cut(s) | 46, 320, 392 |
| BfuAI | ACCTGC | 2 cut(s) | 133, 226 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 170 |
| BglII | AGATCT | 1 cut(s) | 35 |
| BisI | GCNGC | 1 cut(s) | 273 |
| BlsI | GCNGC | 1 cut(s) | 274 |
| BmiI | GGNNCC | 2 cut(s) | 6, 480 |
| BmsI | GCATC | 2 cut(s) | 226, 495 |
| BpmI | CTGGAG | 1 cut(s) | 298 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 494, 524 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 183, 519 |
| Bse1I | ACTGG | 1 cut(s) | 315 |
| Bse21I | CCTNAGG | 1 cut(s) | 182 |
| BseGI | GGATG | 3 cut(s) | 241, 408, 586 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 183, 519 |
| BseMII | CTCAG | 1 cut(s) | 236 |
| BseNI | ACTGG | 1 cut(s) | 315 |
| BseXI | GCAGC | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 183, 519 |
| BsmAI | GTCTC | 1 cut(s) | 94 |
| Bsp143I | GATC | 3 cut(s) | 35, 540, 589 |
| BspACI | CCGC | 4 cut(s) | 59, 243, 263, 397 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspLI | GGNNCC | 2 cut(s) | 6, 480 |
| BspMI | ACCTGC | 2 cut(s) | 133, 226 |
| BspPI | GGATC | 1 cut(s) | 535 |
| BspTI | CTTAAG | 3 cut(s) | 46, 320, 392 |
| BsrI | ACTGG | 1 cut(s) | 315 |
| BssMI | GATC | 3 cut(s) | 35, 540, 589 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| BstAFI | CTTAAG | 3 cut(s) | 46, 320, 392 |
| BstC8I | GCNNGC | 1 cut(s) | 16 |
| BstDEI | CTNAG | 4 cut(s) | 182, 222, 282, 498 |
| BstEII | GGTNACC | 1 cut(s) | 406 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 181 |
| BstF5I | GGATG | 3 cut(s) | 241, 408, 586 |
| BstKTI | GATC | 3 cut(s) | 38, 543, 592 |
| BstMAI | GTCTC | 1 cut(s) | 94 |
| BstMBI | GATC | 3 cut(s) | 35, 540, 589 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 170 |
| BstPI | GGTNACC | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstV1I | GCAGC | 1 cut(s) | 284 |
| BstX2I | RGATCY | 2 cut(s) | 35, 540 |
| BstYI | RGATCY | 2 cut(s) | 35, 540 |
| Bsu36I | CCTNAGG | 1 cut(s) | 182 |
| BtsCI | GGATG | 3 cut(s) | 241, 408, 586 |
| BtsIMutI | CAGTG | 1 cut(s) | 372 |
| BveI | ACCTGC | 2 cut(s) | 133, 226 |
| Cac8I | GCNNGC | 1 cut(s) | 16 |
| CaiI | CAGNNNCTG | 1 cut(s) | 92 |
| CseI | GACGC | 1 cut(s) | 228 |
| Csp6I | GTAC | 1 cut(s) | 75 |
| CviAII | CATG | 1 cut(s) | 412 |
| CviJI | RGCY | 9 cut(s) | 5, 44, 143, 164, 173, 290, 451, 481, 523 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 44, 143, 164, 173, 290, 451, 481, 523 |
| CviQI | GTAC | 1 cut(s) | 75 |
| DdeI | CTNAG | 4 cut(s) | 182, 222, 282, 498 |
| DpnI | GATC | 3 cut(s) | 37, 542, 591 |
| DpnII | GATC | 3 cut(s) | 35, 540, 589 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| Eco81I | CCTNAGG | 1 cut(s) | 182 |
| Eco91I | GGTNACC | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 181 |
| EcoO65I | GGTNACC | 1 cut(s) | 406 |
| FaeI | CATG | 1 cut(s) | 415 |
| FaiI | YATR | 6 cut(s) | 41, 204, 257, 413, 465, 554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FatI | CATG | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 1 cut(s) | 273 |
| FokI | GGATG | 3 cut(s) | 248, 415, 593 |
| Fsp4HI | GCNGC | 1 cut(s) | 273 |
| FspBI | CTAG | 2 cut(s) | 78, 426 |
| GluI | GCNGC | 1 cut(s) | 273 |
| GsuI | CTGGAG | 1 cut(s) | 298 |
| HgaI | GACGC | 1 cut(s) | 228 |
| Hin1II | CATG | 1 cut(s) | 415 |
| HinfI | GANTC | 3 cut(s) | 350, 415, 436 |
| Hpy166II | GTNNAC | 2 cut(s) | 122, 194 |
| Hpy188I | TCNGA | 3 cut(s) | 94, 355, 594 |
| Hpy8I | GTNNAC | 2 cut(s) | 122, 194 |
| HpyAV | CCTTC | 4 cut(s) | 133, 187, 280, 484 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 64, 329, 508, 530 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 170 |
| HpyF3I | CTNAG | 4 cut(s) | 182, 222, 282, 498 |
| Hsp92II | CATG | 1 cut(s) | 415 |
| Kzo9I | GATC | 3 cut(s) | 35, 540, 589 |
| LmnI | GCTCC | 2 cut(s) | 10, 478 |
| LpnPI | CCDG | 3 cut(s) | 138, 231, 328 |
| Lsp1109I | GCAGC | 1 cut(s) | 284 |
| LweI | GCATC | 2 cut(s) | 226, 495 |
| MaeI | CTAG | 2 cut(s) | 78, 426 |
| MaeIII | GTNAC | 1 cut(s) | 406 |
| MalI | GATC | 3 cut(s) | 37, 542, 591 |
| MboI | GATC | 3 cut(s) | 35, 540, 589 |
| MfeI | CAATTG | 1 cut(s) | 483 |
| MflI | RGATCY | 2 cut(s) | 35, 540 |
| MluCI | AATT | 4 cut(s) | 277, 420, 460, 483 |
| MmeI | TCCRAC | 1 cut(s) | 252 |
| MnlI | CCTC | 4 cut(s) | 340, 378, 393, 434 |
| MroXI | GAANNNNTTC | 1 cut(s) | 308 |
| MseI | TTAA | 3 cut(s) | 47, 321, 393 |
| MspCI | CTTAAG | 3 cut(s) | 46, 320, 392 |
| MunI | CAATTG | 1 cut(s) | 483 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 170 |
| NdeII | GATC | 3 cut(s) | 35, 540, 589 |
| NlaIII | CATG | 1 cut(s) | 415 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 480 |
| PdmI | GAANNNNTTC | 1 cut(s) | 308 |
| PfeI | GAWTC | 3 cut(s) | 350, 415, 436 |
| PkrI | GCNGC | 1 cut(s) | 274 |
| PsiI | TTATAA | 1 cut(s) | 465 |
| PspEI | GGTNACC | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 480 |
| PstNI | CAGNNNCTG | 1 cut(s) | 92 |
| PsuI | RGATCY | 2 cut(s) | 35, 540 |
| RsaI | GTAC | 1 cut(s) | 76 |
| RsaNI | GTAC | 1 cut(s) | 75 |
| SaqAI | TTAA | 3 cut(s) | 47, 321, 393 |
| SatI | GCNGC | 1 cut(s) | 273 |
| Sau3AI | GATC | 3 cut(s) | 35, 540, 589 |
| SetI | ASST | 6 cut(s) | 103, 127, 179, 220, 389, 453 |
| SfaNI | GCATC | 2 cut(s) | 226, 495 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SmlI | CTYRAG | 3 cut(s) | 46, 320, 392 |
| SmoI | CTYRAG | 3 cut(s) | 46, 320, 392 |
| Sse9I | AATT | 4 cut(s) | 277, 420, 460, 483 |
| SsiI | CCGC | 4 cut(s) | 59, 243, 263, 397 |
| SspMI | CTAG | 2 cut(s) | 78, 426 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaqI | TCGA | 2 cut(s) | 345, 439 |
| TasI | AATT | 4 cut(s) | 277, 420, 460, 483 |
| TatI | WGTACW | 1 cut(s) | 74 |
| TfiI | GAWTC | 3 cut(s) | 350, 415, 436 |
| Tru1I | TTAA | 3 cut(s) | 47, 321, 393 |
| Tru9I | TTAA | 3 cut(s) | 47, 321, 393 |
| TscAI | CASTG | 1 cut(s) | 379 |
| TseI | GCWGC | 1 cut(s) | 272 |
| TspDTI | ATGAA | 3 cut(s) | 83, 428, 597 |
| TspGWI | ACGGA | 1 cut(s) | 248 |
| TspRI | CASTG | 1 cut(s) | 379 |
| Vha464I | CTTAAG | 3 cut(s) | 46, 320, 392 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 181 |
| XapI | RAATTY | 1 cut(s) | 277 |
| XmnI | GAANNNNTTC | 1 cut(s) | 308 |
| XspI | CTAG | 2 cut(s) | 78, 426 |