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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 492, 651 |
| Acc16I | TGCGCA | 1 cut(s) | 1008 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 1330 |
| AciI | CCGC | 6 cut(s) | 69, 193, 297, 1206, 1212, 1263 |
| AclWI | GGATC | 1 cut(s) | 454 |
| AcsI | RAATTY | 4 cut(s) | 339, 662, 944, 1301 |
| AcuI | CTGAAG | 4 cut(s) | 294, 323, 789, 1035 |
| AcyI | GRCGYC | 2 cut(s) | 489, 648 |
| AfaI | GTAC | 4 cut(s) | 181, 454, 528, 753 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 189, 1268 |
| AgsI | TTSAA | 5 cut(s) | 345, 604, 781, 1061, 1355 |
| AjnI | CCWGG | 1 cut(s) | 871 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1178, 1210 |
| AluBI | AGCT | 5 cut(s) | 307, 556, 1019, 1057, 1181 |
| AluI | AGCT | 5 cut(s) | 307, 556, 1019, 1057, 1181 |
| Alw26I | GTCTC | 1 cut(s) | 480 |
| AlwI | GGATC | 1 cut(s) | 454 |
| AoxI | GGCC | 1 cut(s) | 1145 |
| ApeKI | GCWGC | 6 cut(s) | 35, 59, 140, 161, 307, 1285 |
| ApoI | RAATTY | 4 cut(s) | 339, 662, 944, 1301 |
| AseI | ATTAAT | 1 cut(s) | 981 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 599, 1138 |
| AspLEI | GCGC | 1 cut(s) | 1009 |
| AspS9I | GGNCC | 2 cut(s) | 219, 376 |
| AsuHPI | GGTGA | 2 cut(s) | 407, 1187 |
| AvaII | GGWCC | 2 cut(s) | 219, 376 |
| BanI | GGYRCC | 2 cut(s) | 71, 1330 |
| BbsI | GAAGAC | 1 cut(s) | 1068 |
| BbvI | GCAGC | 6 cut(s) | 22, 46, 127, 148, 294, 1297 |
| BccI | CCATC | 3 cut(s) | 754, 1211, 1220 |
| BciT130I | CCWGG | 1 cut(s) | 873 |
| BcoDI | GTCTC | 1 cut(s) | 480 |
| BfaI | CTAG | 2 cut(s) | 1046, 1143 |
| BfmI | CTRYAG | 2 cut(s) | 579, 810 |
| BisI | GCNGC | 7 cut(s) | 36, 60, 141, 162, 308, 1213, 1286 |
| BlsI | GCNGC | 7 cut(s) | 37, 61, 142, 163, 309, 1214, 1287 |
| Bme1390I | CCNGG | 1 cut(s) | 873 |
| Bme18I | GGWCC | 2 cut(s) | 219, 376 |
| BmgT120I | GGNCC | 2 cut(s) | 219, 376 |
| BmiI | GGNNCC | 4 cut(s) | 73, 220, 586, 1332 |
| BmrFI | CCNGG | 1 cut(s) | 873 |
| BmrI | ACTGGG | 2 cut(s) | 244, 357 |
| BmsI | GCATC | 8 cut(s) | 35, 106, 107, 116, 152, 161, 584, 1000 |
| BmuI | ACTGGG | 2 cut(s) | 244, 357 |
| BpiI | GAAGAC | 1 cut(s) | 1068 |
| BpmI | CTGGAG | 1 cut(s) | 654 |
| Bpu10I | CCTNAGC | 1 cut(s) | 557 |
| BpuEI | CTTGAG | 2 cut(s) | 169, 296 |
| BsaAI | YACGTR | 1 cut(s) | 452 |
| BsaHI | GRCGYC | 2 cut(s) | 489, 648 |
| BsaJI | CCNNGG | 2 cut(s) | 358, 1148 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1019, 1049 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 189, 1268 |
| Bse1I | ACTGG | 4 cut(s) | 250, 298, 352, 1280 |
| BseBI | CCWGG | 1 cut(s) | 873 |
| BseDI | CCNNGG | 2 cut(s) | 358, 1148 |
| BseGI | GGATG | 1 cut(s) | 703 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 189, 1268 |
| BseNI | ACTGG | 4 cut(s) | 250, 298, 352, 1280 |
| BseRI | GAGGAG | 1 cut(s) | 986 |
| BseXI | GCAGC | 6 cut(s) | 22, 46, 127, 148, 294, 1297 |
| BsgI | GTGCAG | 2 cut(s) | 464, 1304 |
| BshFI | GGCC | 1 cut(s) | 1147 |
| BshNI | GGYRCC | 2 cut(s) | 71, 1330 |
| BslFI | GGGAC | 1 cut(s) | 232 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 189, 1268 |
| BsmAI | GTCTC | 1 cut(s) | 480 |
| BsmBI | CGTCTC | 1 cut(s) | 480 |
| BsmFI | GGGAC | 1 cut(s) | 232 |
| BsnI | GGCC | 1 cut(s) | 1147 |
| Bsp1407I | TGTACA | 1 cut(s) | 526 |
| Bsp143I | GATC | 3 cut(s) | 8, 459, 652 |
| Bsp19I | CCATGG | 1 cut(s) | 1148 |
| BspACI | CCGC | 6 cut(s) | 69, 193, 297, 1206, 1212, 1263 |
| BspANI | GGCC | 1 cut(s) | 1147 |
| BspLI | GGNNCC | 4 cut(s) | 73, 220, 586, 1332 |
| BspMAI | CTGCAG | 1 cut(s) | 583 |
| BspPI | GGATC | 1 cut(s) | 454 |
| BspQI | GCTCTTC | 1 cut(s) | 1242 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 1330 |
| BsrGI | TGTACA | 1 cut(s) | 526 |
| BsrI | ACTGG | 4 cut(s) | 250, 298, 352, 1280 |
| BssECI | CCNNGG | 2 cut(s) | 358, 1148 |
| BssMI | GATC | 3 cut(s) | 8, 459, 652 |
| BssNI | GRCGYC | 2 cut(s) | 489, 648 |
| BssT1I | CCWWGG | 1 cut(s) | 1148 |
| Bst2UI | CCWGG | 1 cut(s) | 873 |
| Bst4CI | ACNGT | 2 cut(s) | 568, 811 |
| Bst6I | CTCTTC | 3 cut(s) | 270, 1184, 1242 |
| BstACI | GRCGYC | 2 cut(s) | 489, 648 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 23, 158 |
| BstAUI | TGTACA | 1 cut(s) | 526 |
| BstBAI | YACGTR | 1 cut(s) | 452 |
| BstC8I | GCNNGC | 5 cut(s) | 299, 447, 736, 1011, 1290 |
| BstDEI | CTNAG | 4 cut(s) | 45, 557, 658, 1020 |
| BstDSI | CCRYGG | 2 cut(s) | 358, 1148 |
| BstEII | GGTNACC | 1 cut(s) | 325 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 187 |
| BstF5I | GGATG | 1 cut(s) | 703 |
| BstHHI | GCGC | 1 cut(s) | 1009 |
| BstKTI | GATC | 3 cut(s) | 11, 462, 655 |
| BstMAI | GTCTC | 1 cut(s) | 480 |
| BstMBI | GATC | 3 cut(s) | 8, 459, 652 |
| BstNI | CCWGG | 1 cut(s) | 873 |
| BstPI | GGTNACC | 1 cut(s) | 325 |
| BstSCI | CCNGG | 1 cut(s) | 871 |
| BstSFI | CTRYAG | 2 cut(s) | 579, 810 |
| BstV1I | GCAGC | 6 cut(s) | 22, 46, 127, 148, 294, 1297 |
| BstV2I | GAAGAC | 1 cut(s) | 1068 |
| BstX2I | RGATCY | 1 cut(s) | 459 |
| BstYI | RGATCY | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 1147 |
| BtgI | CCRYGG | 2 cut(s) | 358, 1148 |
| BtgZI | GCGATG | 1 cut(s) | 1230 |
| BtsCI | GGATG | 1 cut(s) | 703 |
| BtsIMutI | CAGTG | 1 cut(s) | 1287 |
| Cac8I | GCNNGC | 5 cut(s) | 299, 447, 736, 1011, 1290 |
| CfoI | GCGC | 1 cut(s) | 1009 |
| Cfr13I | GGNCC | 2 cut(s) | 219, 376 |
| Csp6I | GTAC | 4 cut(s) | 180, 453, 527, 752 |
| CviAII | CATG | 7 cut(s) | 331, 373, 631, 640, 1042, 1149, 1327 |
| CviQI | GTAC | 4 cut(s) | 180, 453, 527, 752 |
| DdeI | CTNAG | 4 cut(s) | 45, 557, 658, 1020 |
| DpnI | GATC | 3 cut(s) | 10, 461, 654 |
| DpnII | GATC | 3 cut(s) | 8, 459, 652 |
| Eam1104I | CTCTTC | 3 cut(s) | 270, 1184, 1242 |
| EarI | CTCTTC | 3 cut(s) | 270, 1184, 1242 |
| EciI | GGCGGA | 1 cut(s) | 208 |
| Eco130I | CCWWGG | 1 cut(s) | 1148 |
| Eco47I | GGWCC | 2 cut(s) | 219, 376 |
| Eco57I | CTGAAG | 4 cut(s) | 294, 323, 789, 1035 |
| Eco91I | GGTNACC | 1 cut(s) | 325 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 187 |
| EcoO65I | GGTNACC | 1 cut(s) | 325 |
| EcoRII | CCWGG | 1 cut(s) | 871 |
| EcoT14I | CCWWGG | 1 cut(s) | 1148 |
| ErhI | CCWWGG | 1 cut(s) | 1148 |
| Esp3I | CGTCTC | 1 cut(s) | 480 |
| FaeI | CATG | 7 cut(s) | 334, 376, 634, 643, 1045, 1152, 1330 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1041, 1073 |
| FaqI | GGGAC | 1 cut(s) | 232 |
| FatI | CATG | 7 cut(s) | 330, 372, 630, 639, 1041, 1148, 1326 |
| FauI | CCCGC | 2 cut(s) | 290, 1270 |
| Fnu4HI | GCNGC | 7 cut(s) | 36, 60, 141, 162, 308, 1213, 1286 |
| FokI | GGATG | 1 cut(s) | 710 |
| Fsp4HI | GCNGC | 7 cut(s) | 36, 60, 141, 162, 308, 1213, 1286 |
| FspBI | CTAG | 2 cut(s) | 1046, 1143 |
| FspI | TGCGCA | 1 cut(s) | 1008 |
| GlaI | GCGC | 1 cut(s) | 1008 |
| GluI | GCNGC | 7 cut(s) | 36, 60, 141, 162, 308, 1213, 1286 |
| GsuI | CTGGAG | 1 cut(s) | 654 |
| HaeIII | GGCC | 1 cut(s) | 1147 |
| HhaI | GCGC | 1 cut(s) | 1009 |
| Hin1I | GRCGYC | 2 cut(s) | 489, 648 |
| Hin1II | CATG | 7 cut(s) | 334, 376, 634, 643, 1045, 1152, 1330 |
| Hin6I | GCGC | 1 cut(s) | 1007 |
| HinP1I | GCGC | 1 cut(s) | 1007 |
| HindIII | AAGCTT | 2 cut(s) | 554, 1055 |
| HinfI | GANTC | 4 cut(s) | 269, 334, 684, 1082 |
| HphI | GGTGA | 2 cut(s) | 407, 1187 |
| Hpy166II | GTNNAC | 4 cut(s) | 362, 398, 527, 748 |
| Hpy188I | TCNGA | 5 cut(s) | 274, 478, 787, 925, 1081 |
| Hpy188III | TCNNGA | 4 cut(s) | 12, 671, 995, 1125 |
| Hpy8I | GTNNAC | 4 cut(s) | 362, 398, 527, 748 |
| Hpy99I | CGWCG | 2 cut(s) | 494, 653 |
| HpyAV | CCTTC | 5 cut(s) | 43, 764, 782, 903, 1349 |
| HpyCH4III | ACNGT | 2 cut(s) | 568, 811 |
| HpyCH4IV | ACGT | 4 cut(s) | 451, 489, 648, 750 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 557, 658, 1020 |
| HpySE526I | ACGT | 4 cut(s) | 451, 489, 648, 750 |
| Hsp92I | GRCGYC | 2 cut(s) | 489, 648 |
| Hsp92II | CATG | 7 cut(s) | 334, 376, 634, 643, 1045, 1152, 1330 |
| HspAI | GCGC | 1 cut(s) | 1007 |
| Kzo9I | GATC | 3 cut(s) | 8, 459, 652 |
| LguI | GCTCTTC | 1 cut(s) | 1242 |
| LmnI | GCTCC | 1 cut(s) | 1027 |
| Lsp1109I | GCAGC | 6 cut(s) | 22, 46, 127, 148, 294, 1297 |
| LweI | GCATC | 8 cut(s) | 35, 106, 107, 116, 152, 161, 584, 1000 |
| MaeI | CTAG | 2 cut(s) | 1046, 1143 |
| MaeII | ACGT | 4 cut(s) | 451, 489, 648, 750 |
| MaeIII | GTNAC | 3 cut(s) | 199, 325, 1096 |
| MalI | GATC | 3 cut(s) | 10, 461, 654 |
| MboI | GATC | 3 cut(s) | 8, 459, 652 |
| MfeI | CAATTG | 1 cut(s) | 111 |
| MflI | RGATCY | 1 cut(s) | 459 |
| MluCI | AATT | 9 cut(s) | 111, 339, 380, 570, 662, 877, 944, 978, 1301 |
| MlyI | GAGTC | 1 cut(s) | 343 |
| MroXI | GAANNNNTTC | 2 cut(s) | 599, 1138 |
| MseI | TTAA | 5 cut(s) | 383, 981, 1070, 1107, 1161 |
| MslI | CAYNNNNRTG | 1 cut(s) | 440 |
| MspR9I | CCNGG | 1 cut(s) | 873 |
| MunI | CAATTG | 1 cut(s) | 111 |
| MvaI | CCWGG | 1 cut(s) | 873 |
| NcoI | CCATGG | 1 cut(s) | 1148 |
| NdeII | GATC | 3 cut(s) | 8, 459, 652 |
| NlaIII | CATG | 7 cut(s) | 334, 376, 634, 643, 1045, 1152, 1330 |
| NlaIV | GGNNCC | 4 cut(s) | 73, 220, 586, 1332 |
| NmuCI | GTSAC | 1 cut(s) | 199 |
| NsbI | TGCGCA | 1 cut(s) | 1008 |
| PciSI | GCTCTTC | 1 cut(s) | 1242 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 498 |
| PdmI | GAANNNNTTC | 2 cut(s) | 599, 1138 |
| PfeI | GAWTC | 3 cut(s) | 269, 684, 1082 |
| PflFI | GACNNNGTC | 1 cut(s) | 205 |
| PkrI | GCNGC | 7 cut(s) | 37, 61, 142, 163, 309, 1214, 1287 |
| PleI | GAGTC | 1 cut(s) | 342 |
| PpsI | GAGTC | 1 cut(s) | 342 |
| Ppu21I | YACGTR | 1 cut(s) | 452 |
| PshBI | ATTAAT | 1 cut(s) | 981 |
| Psp6I | CCWGG | 1 cut(s) | 871 |
| PspEI | GGTNACC | 1 cut(s) | 325 |
| PspGI | CCWGG | 1 cut(s) | 871 |
| PspN4I | GGNNCC | 4 cut(s) | 73, 220, 586, 1332 |
| PspPI | GGNCC | 2 cut(s) | 219, 376 |
| PstI | CTGCAG | 1 cut(s) | 583 |
| PsuI | RGATCY | 1 cut(s) | 459 |
| PsyI | GACNNNGTC | 1 cut(s) | 205 |
| RsaI | GTAC | 4 cut(s) | 181, 454, 528, 753 |
| RsaNI | GTAC | 4 cut(s) | 180, 453, 527, 752 |
| RseI | CAYNNNNRTG | 1 cut(s) | 440 |
| SapI | GCTCTTC | 1 cut(s) | 1242 |
| SaqAI | TTAA | 5 cut(s) | 383, 981, 1070, 1107, 1161 |
| SatI | GCNGC | 7 cut(s) | 36, 60, 141, 162, 308, 1213, 1286 |
| Sau3AI | GATC | 3 cut(s) | 8, 459, 652 |
| Sau96I | GGNCC | 2 cut(s) | 219, 376 |
| SchI | GAGTC | 1 cut(s) | 343 |
| ScrFI | CCNGG | 1 cut(s) | 873 |
| SfaNI | GCATC | 8 cut(s) | 35, 106, 107, 116, 152, 161, 584, 1000 |
| SfcI | CTRYAG | 2 cut(s) | 579, 810 |
| SinI | GGWCC | 2 cut(s) | 219, 376 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 440 |
| SmlI | CTYRAG | 2 cut(s) | 184, 311 |
| SmoI | CTYRAG | 2 cut(s) | 184, 311 |
| Sse9I | AATT | 9 cut(s) | 111, 339, 380, 570, 662, 877, 944, 978, 1301 |
| SsiI | CCGC | 6 cut(s) | 69, 193, 297, 1206, 1212, 1263 |
| SspMI | CTAG | 2 cut(s) | 1046, 1143 |
| StyD4I | CCNGG | 1 cut(s) | 871 |
| StyI | CCWWGG | 1 cut(s) | 1148 |
| TaaI | ACNGT | 2 cut(s) | 568, 811 |
| TaiI | ACGT | 4 cut(s) | 454, 492, 651, 753 |
| TaqI | TCGA | 5 cut(s) | 101, 146, 492, 651, 1310 |
| TasI | AATT | 9 cut(s) | 111, 339, 380, 570, 662, 877, 944, 978, 1301 |
| TatI | WGTACW | 1 cut(s) | 526 |
| TauI | GCSGC | 1 cut(s) | 1215 |
| TfiI | GAWTC | 3 cut(s) | 269, 684, 1082 |
| Tru1I | TTAA | 5 cut(s) | 383, 981, 1070, 1107, 1161 |
| Tru9I | TTAA | 5 cut(s) | 383, 981, 1070, 1107, 1161 |
| TscAI | CASTG | 1 cut(s) | 1287 |
| TseFI | GTSAC | 1 cut(s) | 199 |
| TseI | GCWGC | 6 cut(s) | 35, 59, 140, 161, 307, 1285 |
| Tsp45I | GTSAC | 1 cut(s) | 199 |
| TspDTI | ATGAA | 7 cut(s) | 17, 361, 424, 656, 676, 703, 735 |
| TspGWI | ACGGA | 1 cut(s) | 347 |
| TspRI | CASTG | 1 cut(s) | 1287 |
| Tth111I | GACNNNGTC | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 2 cut(s) | 219, 376 |
| VspI | ATTAAT | 1 cut(s) | 981 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 187 |
| XapI | RAATTY | 4 cut(s) | 339, 662, 944, 1301 |
| XmnI | GAANNNNTTC | 2 cut(s) | 599, 1138 |
| XspI | CTAG | 2 cut(s) | 1046, 1143 |
| ZraI | GACGTC | 2 cut(s) | 490, 649 |