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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 258 |
| AccIII | TCCGGA | 1 cut(s) | 465 |
| AciI | CCGC | 1 cut(s) | 345 |
| AclWI | GGATC | 5 cut(s) | 149, 182, 195, 380, 393 |
| AcsI | RAATTY | 1 cut(s) | 252 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 197, 395, 499 |
| AgsI | TTSAA | 1 cut(s) | 497 |
| AjnI | CCWGG | 2 cut(s) | 127, 196 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 93, 125 |
| AluBI | AGCT | 2 cut(s) | 39, 53 |
| AluI | AGCT | 2 cut(s) | 39, 53 |
| AlwI | GGATC | 5 cut(s) | 149, 182, 195, 380, 393 |
| Aor13HI | TCCGGA | 1 cut(s) | 465 |
| AoxI | GGCC | 3 cut(s) | 130, 222, 280 |
| ApoI | RAATTY | 1 cut(s) | 252 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 1 cut(s) | 110 |
| BamHI | GGATCC | 2 cut(s) | 187, 385 |
| BbsI | GAAGAC | 1 cut(s) | 95 |
| BceAI | ACGGC | 2 cut(s) | 117, 267 |
| BciT130I | CCWGG | 2 cut(s) | 129, 198 |
| BfmI | CTRYAG | 1 cut(s) | 24 |
| Bme1390I | CCNGG | 2 cut(s) | 129, 198 |
| BmiI | GGNNCC | 2 cut(s) | 189, 387 |
| BmrFI | CCNGG | 2 cut(s) | 129, 198 |
| BmsI | GCATC | 3 cut(s) | 83, 105, 348 |
| BpiI | GAAGAC | 1 cut(s) | 95 |
| BsaAI | YACGTR | 1 cut(s) | 355 |
| BsaJI | CCNNGG | 1 cut(s) | 393 |
| BsaWI | WCCGGW | 1 cut(s) | 465 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 197, 395, 499 |
| Bse1I | ACTGG | 1 cut(s) | 504 |
| Bse3DI | GCAATG | 1 cut(s) | 340 |
| BseAI | TCCGGA | 1 cut(s) | 465 |
| BseBI | CCWGG | 2 cut(s) | 129, 198 |
| BseDI | CCNNGG | 1 cut(s) | 393 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 197, 395, 499 |
| BseMI | GCAATG | 1 cut(s) | 340 |
| BseNI | ACTGG | 1 cut(s) | 504 |
| BseYI | CCCAGC | 1 cut(s) | 329 |
| BshFI | GGCC | 3 cut(s) | 132, 224, 282 |
| BsiSI | CCGG | 1 cut(s) | 466 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 197, 395, 499 |
| BsmI | GAATGC | 1 cut(s) | 347 |
| BsnI | GGCC | 3 cut(s) | 132, 224, 282 |
| Bsp13I | TCCGGA | 1 cut(s) | 465 |
| Bsp143I | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| BspACI | CCGC | 1 cut(s) | 345 |
| BspANI | GGCC | 3 cut(s) | 132, 224, 282 |
| BspEI | TCCGGA | 1 cut(s) | 465 |
| BspHI | TCATGA | 1 cut(s) | 366 |
| BspLI | GGNNCC | 2 cut(s) | 189, 387 |
| BspPI | GGATC | 5 cut(s) | 149, 182, 195, 380, 393 |
| BspQI | GCTCTTC | 1 cut(s) | 426 |
| BsrDI | GCAATG | 1 cut(s) | 340 |
| BsrI | ACTGG | 1 cut(s) | 504 |
| BssECI | CCNNGG | 1 cut(s) | 393 |
| BssMI | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| BssT1I | CCWWGG | 1 cut(s) | 393 |
| Bst2UI | CCWGG | 2 cut(s) | 129, 198 |
| Bst4CI | ACNGT | 4 cut(s) | 28, 98, 175, 242 |
| Bst6I | CTCTTC | 2 cut(s) | 213, 426 |
| BstBAI | YACGTR | 1 cut(s) | 355 |
| BstC8I | GCNNGC | 1 cut(s) | 37 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 195 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 5 cut(s) | 62, 144, 190, 278, 388 |
| BstMBI | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| BstNI | CCWGG | 2 cut(s) | 129, 198 |
| BstSCI | CCNGG | 2 cut(s) | 127, 196 |
| BstSFI | CTRYAG | 1 cut(s) | 24 |
| BstV2I | GAAGAC | 1 cut(s) | 95 |
| BstX2I | RGATCY | 3 cut(s) | 141, 187, 385 |
| BstYI | RGATCY | 3 cut(s) | 141, 187, 385 |
| BsuRI | GGCC | 3 cut(s) | 132, 224, 282 |
| BtsIMutI | CAGTG | 1 cut(s) | 247 |
| Cac8I | GCNNGC | 1 cut(s) | 37 |
| CciI | TCATGA | 1 cut(s) | 366 |
| CfoI | GCGC | 1 cut(s) | 363 |
| CviAII | CATG | 2 cut(s) | 367, 382 |
| CviJI | RGCY | 8 cut(s) | 9, 39, 53, 132, 224, 272, 282, 436 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 39, 53, 132, 224, 272, 282, 436 |
| DpnI | GATC | 5 cut(s) | 61, 143, 189, 277, 387 |
| DpnII | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| Eam1104I | CTCTTC | 2 cut(s) | 213, 426 |
| EarI | CTCTTC | 2 cut(s) | 213, 426 |
| Eco130I | CCWWGG | 1 cut(s) | 393 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 195 |
| EcoRII | CCWGG | 2 cut(s) | 127, 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 393 |
| ErhI | CCWWGG | 1 cut(s) | 393 |
| FaeI | CATG | 2 cut(s) | 370, 385 |
| FaiI | YATR | 7 cut(s) | 248, 258, 269, 368, 383, 414, 439 |
| FatI | CATG | 2 cut(s) | 366, 381 |
| FauI | CCCGC | 1 cut(s) | 338 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GsaI | CCCAGC | 1 cut(s) | 333 |
| HaeIII | GGCC | 3 cut(s) | 132, 224, 282 |
| HapII | CCGG | 1 cut(s) | 466 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 2 cut(s) | 370, 385 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HpaII | CCGG | 1 cut(s) | 466 |
| HphI | GGTGA | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 2 cut(s) | 101, 238 |
| Hpy188I | TCNGA | 1 cut(s) | 87 |
| Hpy188III | TCNNGA | 7 cut(s) | 63, 78, 112, 185, 235, 367, 466 |
| Hpy8I | GTNNAC | 2 cut(s) | 101, 238 |
| HpyAV | CCTTC | 4 cut(s) | 364, 399, 412, 503 |
| HpyCH4III | ACNGT | 4 cut(s) | 28, 98, 175, 242 |
| HpyCH4IV | ACGT | 1 cut(s) | 354 |
| HpySE526I | ACGT | 1 cut(s) | 354 |
| Hsp92II | CATG | 2 cut(s) | 370, 385 |
| HspAI | GCGC | 1 cut(s) | 361 |
| Kpn2I | TCCGGA | 1 cut(s) | 465 |
| Kzo9I | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| LguI | GCTCTTC | 1 cut(s) | 426 |
| LweI | GCATC | 3 cut(s) | 83, 105, 348 |
| MaeII | ACGT | 1 cut(s) | 354 |
| MalI | GATC | 5 cut(s) | 61, 143, 189, 277, 387 |
| MboI | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| MboII | GAAGA | 4 cut(s) | 100, 230, 418, 443 |
| MfeI | CAATTG | 1 cut(s) | 453 |
| MflI | RGATCY | 3 cut(s) | 141, 187, 385 |
| MluCI | AATT | 3 cut(s) | 252, 259, 453 |
| MnlI | CCTC | 3 cut(s) | 159, 201, 214 |
| MroI | TCCGGA | 1 cut(s) | 465 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspI | CCGG | 1 cut(s) | 466 |
| MspR9I | CCNGG | 2 cut(s) | 129, 198 |
| MunI | CAATTG | 1 cut(s) | 453 |
| Mva1269I | GAATGC | 1 cut(s) | 347 |
| MvaI | CCWGG | 2 cut(s) | 129, 198 |
| NdeII | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| NlaIII | CATG | 2 cut(s) | 370, 385 |
| NlaIV | GGNNCC | 2 cut(s) | 189, 387 |
| PagI | TCATGA | 1 cut(s) | 366 |
| PciSI | GCTCTTC | 1 cut(s) | 426 |
| PctI | GAATGC | 1 cut(s) | 347 |
| Ppu21I | YACGTR | 1 cut(s) | 355 |
| PsiI | TTATAA | 1 cut(s) | 258 |
| Psp6I | CCWGG | 2 cut(s) | 127, 196 |
| PspFI | CCCAGC | 1 cut(s) | 329 |
| PspGI | CCWGG | 2 cut(s) | 127, 196 |
| PspN4I | GGNNCC | 2 cut(s) | 189, 387 |
| PsuI | RGATCY | 3 cut(s) | 141, 187, 385 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SapI | GCTCTTC | 1 cut(s) | 426 |
| Sau3AI | GATC | 5 cut(s) | 59, 141, 187, 275, 385 |
| ScrFI | CCNGG | 2 cut(s) | 129, 198 |
| SetI | ASST | 3 cut(s) | 41, 55, 357 |
| SfaNI | GCATC | 3 cut(s) | 83, 105, 348 |
| SfcI | CTRYAG | 1 cut(s) | 24 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| Sse9I | AATT | 3 cut(s) | 252, 259, 453 |
| SsiI | CCGC | 1 cut(s) | 345 |
| StyD4I | CCNGG | 2 cut(s) | 127, 196 |
| StyI | CCWWGG | 1 cut(s) | 393 |
| TaaI | ACNGT | 4 cut(s) | 28, 98, 175, 242 |
| TaiI | ACGT | 1 cut(s) | 357 |
| TaqI | TCGA | 3 cut(s) | 15, 213, 339 |
| TasI | AATT | 3 cut(s) | 252, 259, 453 |
| TscAI | CASTG | 1 cut(s) | 247 |
| TspDTI | ATGAA | 5 cut(s) | 231, 355, 383, 474, 486 |
| TspRI | CASTG | 1 cut(s) | 247 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 195 |
| XapI | RAATTY | 1 cut(s) | 252 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 135 |