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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| Acc65I | GGTACC | 1 cut(s) | 171 |
| AccB1I | GGYRCC | 1 cut(s) | 171 |
| AccIII | TCCGGA | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 404, 555 |
| AclWI | GGATC | 1 cut(s) | 365 |
| AcsI | RAATTY | 1 cut(s) | 514 |
| AcuI | CTGAAG | 1 cut(s) | 87 |
| AfaI | GTAC | 2 cut(s) | 173, 560 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 380 |
| AflIII | ACRYGT | 1 cut(s) | 603 |
| AgsI | TTSAA | 2 cut(s) | 31, 190 |
| AjnI | CCWGG | 2 cut(s) | 310, 654 |
| AleI | CACNNNNGTG | 1 cut(s) | 710 |
| Alw21I | GWGCWC | 1 cut(s) | 717 |
| Alw44I | GTGCAC | 1 cut(s) | 713 |
| AlwI | GGATC | 1 cut(s) | 365 |
| Aor13HI | TCCGGA | 1 cut(s) | 373 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApaLI | GTGCAC | 1 cut(s) | 713 |
| ApeKI | GCWGC | 1 cut(s) | 328 |
| ApoI | RAATTY | 1 cut(s) | 514 |
| Asp718I | GGTACC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 2 cut(s) | 274, 400 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 356 |
| AvaII | GGWCC | 1 cut(s) | 400 |
| BaeGI | GKGCMC | 1 cut(s) | 717 |
| BanI | GGYRCC | 1 cut(s) | 171 |
| BauI | CACGAG | 1 cut(s) | 716 |
| Bbv12I | GWGCWC | 1 cut(s) | 717 |
| BbvI | GCAGC | 1 cut(s) | 315 |
| BccI | CCATC | 1 cut(s) | 29 |
| BciT130I | CCWGG | 2 cut(s) | 312, 656 |
| BciVI | GTATCC | 1 cut(s) | 442 |
| BclI | TGATCA | 2 cut(s) | 346, 667 |
| BfaI | CTAG | 1 cut(s) | 540 |
| BfuI | GTATCC | 1 cut(s) | 442 |
| BisI | GCNGC | 1 cut(s) | 329 |
| BlsI | GCNGC | 1 cut(s) | 330 |
| Bme1390I | CCNGG | 2 cut(s) | 312, 656 |
| Bme18I | GGWCC | 1 cut(s) | 400 |
| BmgT120I | GGNCC | 2 cut(s) | 274, 400 |
| BmiI | GGNNCC | 2 cut(s) | 173, 402 |
| BmrFI | CCNGG | 2 cut(s) | 312, 656 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BsaBI | GATNNNNATC | 2 cut(s) | 440, 666 |
| BsaJI | CCNNGG | 2 cut(s) | 311, 654 |
| BsaWI | WCCGGW | 1 cut(s) | 373 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 542, 572, 625, 655 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 380 |
| Bse1I | ACTGG | 1 cut(s) | 148 |
| Bse3DI | GCAATG | 1 cut(s) | 153 |
| Bse8I | GATNNNNATC | 2 cut(s) | 440, 666 |
| BseAI | TCCGGA | 1 cut(s) | 373 |
| BseBI | CCWGG | 2 cut(s) | 312, 656 |
| BseDI | CCNNGG | 2 cut(s) | 311, 654 |
| BseGI | GGATG | 2 cut(s) | 28, 441 |
| BseJI | GATNNNNATC | 2 cut(s) | 440, 666 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BseMI | GCAATG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 148 |
| BseRI | GAGGAG | 1 cut(s) | 646 |
| BseSI | GKGCMC | 1 cut(s) | 717 |
| BseXI | GCAGC | 1 cut(s) | 315 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BshNI | GGYRCC | 1 cut(s) | 171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 717 |
| BsiSI | CCGG | 1 cut(s) | 374 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BsmI | GAATGC | 2 cut(s) | 26, 525 |
| BsnI | GGCC | 1 cut(s) | 275 |
| Bsp1286I | GDGCHC | 1 cut(s) | 717 |
| Bsp13I | TCCGGA | 1 cut(s) | 373 |
| Bsp143I | GATC | 3 cut(s) | 346, 370, 667 |
| BspACI | CCGC | 2 cut(s) | 404, 555 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspEI | TCCGGA | 1 cut(s) | 373 |
| BspHI | TCATGA | 1 cut(s) | 722 |
| BspLI | GGNNCC | 2 cut(s) | 173, 402 |
| BspPI | GGATC | 1 cut(s) | 365 |
| BspT107I | GGYRCC | 1 cut(s) | 171 |
| BsrDI | GCAATG | 1 cut(s) | 153 |
| BsrI | ACTGG | 1 cut(s) | 148 |
| BssECI | CCNNGG | 2 cut(s) | 311, 654 |
| BssMI | GATC | 3 cut(s) | 346, 370, 667 |
| BssSI | CACGAG | 1 cut(s) | 716 |
| Bst2BI | CACGAG | 1 cut(s) | 716 |
| Bst2UI | CCWGG | 2 cut(s) | 312, 656 |
| Bst4CI | ACNGT | 1 cut(s) | 268 |
| BstC8I | GCNNGC | 2 cut(s) | 127, 523 |
| BstDEI | CTNAG | 1 cut(s) | 340 |
| BstF5I | GGATG | 2 cut(s) | 28, 441 |
| BstKTI | GATC | 3 cut(s) | 349, 373, 670 |
| BstMBI | GATC | 3 cut(s) | 346, 370, 667 |
| BstNI | CCWGG | 2 cut(s) | 312, 656 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSCI | CCNGG | 2 cut(s) | 310, 654 |
| BstSLI | GKGCMC | 1 cut(s) | 717 |
| BstV1I | GCAGC | 1 cut(s) | 315 |
| BsuI | GTATCC | 1 cut(s) | 442 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtsCI | GGATG | 2 cut(s) | 28, 441 |
| Cac8I | GCNNGC | 2 cut(s) | 127, 523 |
| CciI | TCATGA | 1 cut(s) | 722 |
| Cfr13I | GGNCC | 2 cut(s) | 274, 400 |
| CseI | GACGC | 1 cut(s) | 423 |
| Csp6I | GTAC | 2 cut(s) | 172, 559 |
| CviAII | CATG | 6 cut(s) | 130, 325, 568, 577, 604, 723 |
| CviJI | RGCY | 6 cut(s) | 64, 194, 275, 295, 521, 645 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 194, 275, 295, 521, 645 |
| CviQI | GTAC | 2 cut(s) | 172, 559 |
| DdeI | CTNAG | 1 cut(s) | 340 |
| DpnI | GATC | 3 cut(s) | 348, 372, 669 |
| DpnII | GATC | 3 cut(s) | 346, 370, 667 |
| Eco32I | GATATC | 1 cut(s) | 586 |
| Eco47I | GGWCC | 1 cut(s) | 400 |
| Eco57I | CTGAAG | 1 cut(s) | 87 |
| EcoRII | CCWGG | 2 cut(s) | 310, 654 |
| EcoRV | GATATC | 1 cut(s) | 586 |
| EcoT22I | ATGCAT | 1 cut(s) | 28 |
| FaeI | CATG | 6 cut(s) | 133, 328, 571, 580, 607, 726 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 279, 311 |
| FatI | CATG | 6 cut(s) | 129, 324, 567, 576, 603, 722 |
| FauI | CCCGC | 2 cut(s) | 411, 548 |
| FauNDI | CATATG | 1 cut(s) | 709 |
| FbaI | TGATCA | 2 cut(s) | 346, 667 |
| Fnu4HI | GCNGC | 1 cut(s) | 329 |
| FokI | GGATG | 2 cut(s) | 35, 448 |
| Fsp4HI | GCNGC | 1 cut(s) | 329 |
| FspBI | CTAG | 1 cut(s) | 540 |
| GluI | GCNGC | 1 cut(s) | 329 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| HapII | CCGG | 1 cut(s) | 374 |
| HgaI | GACGC | 1 cut(s) | 423 |
| Hin1II | CATG | 6 cut(s) | 133, 328, 571, 580, 607, 726 |
| HincII | GTYRAC | 3 cut(s) | 226, 360, 703 |
| HindII | GTYRAC | 3 cut(s) | 226, 360, 703 |
| HinfI | GANTC | 1 cut(s) | 719 |
| HpaII | CCGG | 1 cut(s) | 374 |
| HphI | GGTGA | 2 cut(s) | 29, 356 |
| Hpy166II | GTNNAC | 4 cut(s) | 226, 360, 703, 715 |
| Hpy188I | TCNGA | 3 cut(s) | 168, 475, 495 |
| Hpy188III | TCNNGA | 2 cut(s) | 374, 723 |
| Hpy8I | GTNNAC | 4 cut(s) | 226, 360, 703, 715 |
| HpyAV | CCTTC | 3 cut(s) | 184, 240, 627 |
| HpyCH4III | ACNGT | 1 cut(s) | 268 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 125, 153, 715 |
| HpyF3I | CTNAG | 1 cut(s) | 340 |
| Hsp92II | CATG | 6 cut(s) | 133, 328, 571, 580, 607, 726 |
| Kpn2I | TCCGGA | 1 cut(s) | 373 |
| KpnI | GGTACC | 1 cut(s) | 175 |
| Ksp22I | TGATCA | 2 cut(s) | 346, 667 |
| Kzo9I | GATC | 3 cut(s) | 346, 370, 667 |
| Lsp1109I | GCAGC | 1 cut(s) | 315 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 1 cut(s) | 540 |
| MaeIII | GTNAC | 2 cut(s) | 139, 298 |
| MalI | GATC | 3 cut(s) | 348, 372, 669 |
| MboI | GATC | 3 cut(s) | 346, 370, 667 |
| MhlI | GDGCHC | 1 cut(s) | 717 |
| MluCI | AATT | 1 cut(s) | 514 |
| MmeI | TCCRAC | 1 cut(s) | 473 |
| MnlI | CCTC | 7 cut(s) | 13, 126, 162, 540, 586, 624, 629 |
| Mph1103I | ATGCAT | 1 cut(s) | 28 |
| MroI | TCCGGA | 1 cut(s) | 373 |
| MslI | CAYNNNNRTG | 2 cut(s) | 158, 710 |
| MspA1I | CMGCKG | 1 cut(s) | 406 |
| MspI | CCGG | 1 cut(s) | 374 |
| MspR9I | CCNGG | 2 cut(s) | 312, 656 |
| Mva1269I | GAATGC | 2 cut(s) | 26, 525 |
| MvaI | CCWGG | 2 cut(s) | 312, 656 |
| NdeI | CATATG | 1 cut(s) | 709 |
| NdeII | GATC | 3 cut(s) | 346, 370, 667 |
| NlaIII | CATG | 6 cut(s) | 133, 328, 571, 580, 607, 726 |
| NlaIV | GGNNCC | 2 cut(s) | 173, 402 |
| NsiI | ATGCAT | 1 cut(s) | 28 |
| NspI | RCATGY | 1 cut(s) | 607 |
| OliI | CACNNNNGTG | 1 cut(s) | 710 |
| PagI | TCATGA | 1 cut(s) | 722 |
| PciI | ACATGT | 1 cut(s) | 603 |
| PctI | GAATGC | 2 cut(s) | 26, 525 |
| PkrI | GCNGC | 1 cut(s) | 330 |
| PscI | ACATGT | 1 cut(s) | 603 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| Psp6I | CCWGG | 2 cut(s) | 310, 654 |
| PspGI | CCWGG | 2 cut(s) | 310, 654 |
| PspN4I | GGNNCC | 2 cut(s) | 173, 402 |
| PspPI | GGNCC | 2 cut(s) | 274, 400 |
| RsaI | GTAC | 2 cut(s) | 173, 560 |
| RsaNI | GTAC | 2 cut(s) | 172, 559 |
| RseI | CAYNNNNRTG | 2 cut(s) | 158, 710 |
| SatI | GCNGC | 1 cut(s) | 329 |
| Sau3AI | GATC | 3 cut(s) | 346, 370, 667 |
| Sau96I | GGNCC | 2 cut(s) | 274, 400 |
| ScrFI | CCNGG | 2 cut(s) | 312, 656 |
| SduI | GDGCHC | 1 cut(s) | 717 |
| SetI | ASST | 4 cut(s) | 173, 177, 346, 541 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 400 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 158, 710 |
| Sse9I | AATT | 1 cut(s) | 514 |
| SsiI | CCGC | 2 cut(s) | 404, 555 |
| SspMI | CTAG | 1 cut(s) | 540 |
| StyD4I | CCNGG | 2 cut(s) | 310, 654 |
| TaaI | ACNGT | 1 cut(s) | 268 |
| TasI | AATT | 1 cut(s) | 514 |
| TseI | GCWGC | 1 cut(s) | 328 |
| TspDTI | ATGAA | 1 cut(s) | 313 |
| VneI | GTGCAC | 1 cut(s) | 713 |
| VpaK11BI | GGWCC | 1 cut(s) | 400 |
| XapI | RAATTY | 1 cut(s) | 514 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XspI | CTAG | 1 cut(s) | 540 |
| Zsp2I | ATGCAT | 1 cut(s) | 28 |