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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 501 |
| AcoI | YGGCCR | 1 cut(s) | 316 |
| AcsI | RAATTY | 1 cut(s) | 593 |
| AcuI | CTGAAG | 1 cut(s) | 251 |
| AdeI | CACNNNGTG | 1 cut(s) | 329 |
| AfaI | GTAC | 2 cut(s) | 293, 698 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 58, 501 |
| AgsI | TTSAA | 3 cut(s) | 216, 514, 633 |
| AluBI | AGCT | 3 cut(s) | 94, 485, 629 |
| AluI | AGCT | 3 cut(s) | 94, 485, 629 |
| Alw21I | GWGCWC | 1 cut(s) | 239 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| AoxI | GGCC | 2 cut(s) | 278, 316 |
| ApeKI | GCWGC | 1 cut(s) | 491 |
| ApoI | RAATTY | 1 cut(s) | 593 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 431, 463 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 509 |
| AsuII | TTCGAA | 2 cut(s) | 125, 143 |
| BalI | TGGCCA | 1 cut(s) | 318 |
| BanII | GRGCYC | 1 cut(s) | 397 |
| BauI | CACGAG | 1 cut(s) | 246 |
| BbsI | GAAGAC | 2 cut(s) | 114, 132 |
| Bbv12I | GWGCWC | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 478 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BisI | GCNGC | 1 cut(s) | 492 |
| BlsI | GCNGC | 1 cut(s) | 493 |
| BmiI | GGNNCC | 1 cut(s) | 70 |
| BmsI | GCATC | 2 cut(s) | 324, 607 |
| BpiI | GAAGAC | 2 cut(s) | 114, 132 |
| BpmI | CTGGAG | 1 cut(s) | 349 |
| Bpu14I | TTCGAA | 2 cut(s) | 125, 143 |
| BpuEI | CTTGAG | 3 cut(s) | 30, 96, 713 |
| Bsa29I | ATCGAT | 1 cut(s) | 706 |
| BsaJI | CCNNGG | 1 cut(s) | 405 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 53, 83 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 58, 501 |
| Bse3DI | GCAATG | 1 cut(s) | 441 |
| BseCI | ATCGAT | 1 cut(s) | 706 |
| BseDI | CCNNGG | 1 cut(s) | 405 |
| BseGI | GGATG | 1 cut(s) | 622 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 58, 501 |
| BseMI | GCAATG | 1 cut(s) | 441 |
| BseMII | CTCAG | 2 cut(s) | 165, 289 |
| BseRI | GAGGAG | 1 cut(s) | 99 |
| BseXI | GCAGC | 1 cut(s) | 478 |
| BshFI | GGCC | 2 cut(s) | 280, 318 |
| BshVI | ATCGAT | 1 cut(s) | 706 |
| BsiHKAI | GWGCWC | 1 cut(s) | 239 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 58, 501 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsmI | GAATGC | 1 cut(s) | 661 |
| BsnI | GGCC | 2 cut(s) | 280, 318 |
| Bsp119I | TTCGAA | 2 cut(s) | 125, 143 |
| Bsp1286I | GDGCHC | 2 cut(s) | 239, 397 |
| BspANI | GGCC | 2 cut(s) | 280, 318 |
| BspCNI | CTCAG | 2 cut(s) | 166, 288 |
| BspDI | ATCGAT | 1 cut(s) | 706 |
| BspLI | GGNNCC | 1 cut(s) | 70 |
| BspT104I | TTCGAA | 2 cut(s) | 125, 143 |
| BsrDI | GCAATG | 1 cut(s) | 441 |
| BssECI | CCNNGG | 1 cut(s) | 405 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst6I | CTCTTC | 1 cut(s) | 251 |
| BstBI | TTCGAA | 2 cut(s) | 125, 143 |
| BstC8I | GCNNGC | 1 cut(s) | 361 |
| BstDEI | CTNAG | 2 cut(s) | 174, 275 |
| BstF5I | GGATG | 1 cut(s) | 622 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 491, 626 |
| BstNSI | RCATGY | 1 cut(s) | 674 |
| BstV1I | GCAGC | 1 cut(s) | 478 |
| BstV2I | GAAGAC | 2 cut(s) | 114, 132 |
| Bsu15I | ATCGAT | 1 cut(s) | 706 |
| BsuRI | GGCC | 2 cut(s) | 280, 318 |
| BsuTUI | ATCGAT | 1 cut(s) | 706 |
| BtsCI | GGATG | 1 cut(s) | 622 |
| Cac8I | GCNNGC | 1 cut(s) | 361 |
| ClaI | ATCGAT | 1 cut(s) | 706 |
| Csp6I | GTAC | 2 cut(s) | 292, 697 |
| CviAII | CATG | 2 cut(s) | 385, 671 |
| CviJI | RGCY | 9 cut(s) | 41, 69, 94, 280, 318, 395, 485, 573, 629 |
| CviKI_1 | RGCY | 9 cut(s) | 41, 69, 94, 280, 318, 395, 485, 573, 629 |
| CviQI | GTAC | 2 cut(s) | 292, 697 |
| DdeI | CTNAG | 2 cut(s) | 174, 275 |
| DraIII | CACNNNGTG | 1 cut(s) | 329 |
| EaeI | YGGCCR | 1 cut(s) | 316 |
| Eam1104I | CTCTTC | 1 cut(s) | 251 |
| EarI | CTCTTC | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco24I | GRGCYC | 1 cut(s) | 397 |
| Eco57I | CTGAAG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| EcoT38I | GRGCYC | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| FaeI | CATG | 2 cut(s) | 388, 674 |
| FatI | CATG | 2 cut(s) | 384, 670 |
| Fnu4HI | GCNGC | 1 cut(s) | 492 |
| FokI | GGATG | 1 cut(s) | 629 |
| FriOI | GRGCYC | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 1 cut(s) | 492 |
| GluI | GCNGC | 1 cut(s) | 492 |
| GsuI | CTGGAG | 1 cut(s) | 349 |
| HaeIII | GGCC | 2 cut(s) | 280, 318 |
| Hin1II | CATG | 2 cut(s) | 388, 674 |
| HincII | GTYRAC | 1 cut(s) | 439 |
| HindII | GTYRAC | 1 cut(s) | 439 |
| HinfI | GANTC | 3 cut(s) | 62, 212, 653 |
| Hpy166II | GTNNAC | 3 cut(s) | 382, 439, 519 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 208, 270 |
| Hpy188III | TCNNGA | 4 cut(s) | 47, 113, 366, 714 |
| Hpy8I | GTNNAC | 3 cut(s) | 382, 439, 519 |
| HpyAV | CCTTC | 1 cut(s) | 499 |
| HpyCH4V | TGCA | 3 cut(s) | 337, 661, 674 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 491, 626 |
| HpyF3I | CTNAG | 2 cut(s) | 174, 275 |
| Hsp92II | CATG | 2 cut(s) | 388, 674 |
| LmnI | GCTCC | 4 cut(s) | 74, 91, 368, 418 |
| LpnPI | CCDG | 7 cut(s) | 51, 202, 207, 262, 379, 544, 594 |
| Lsp1109I | GCAGC | 1 cut(s) | 478 |
| LweI | GCATC | 2 cut(s) | 324, 607 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MboII | GAAGA | 7 cut(s) | 114, 132, 139, 142, 157, 160, 268 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MhlI | GDGCHC | 2 cut(s) | 239, 397 |
| MlsI | TGGCCA | 1 cut(s) | 318 |
| MluCI | AATT | 3 cut(s) | 282, 312, 593 |
| MluNI | TGGCCA | 1 cut(s) | 318 |
| MlyI | GAGTC | 2 cut(s) | 56, 662 |
| MnlI | CCTC | 6 cut(s) | 77, 120, 221, 255, 522, 679 |
| Mox20I | TGGCCA | 1 cut(s) | 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 509 |
| MscI | TGGCCA | 1 cut(s) | 318 |
| MseI | TTAA | 1 cut(s) | 569 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| Msp20I | TGGCCA | 1 cut(s) | 318 |
| MunI | CAATTG | 1 cut(s) | 282 |
| Mva1269I | GAATGC | 1 cut(s) | 661 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 491, 626 |
| NlaIII | CATG | 2 cut(s) | 388, 674 |
| NlaIV | GGNNCC | 1 cut(s) | 70 |
| NspI | RCATGY | 1 cut(s) | 674 |
| NspV | TTCGAA | 2 cut(s) | 125, 143 |
| PctI | GAATGC | 1 cut(s) | 661 |
| PdmI | GAANNNNTTC | 1 cut(s) | 509 |
| PfeI | GAWTC | 1 cut(s) | 212 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 501 |
| PkrI | GCNGC | 1 cut(s) | 493 |
| PleI | GAGTC | 2 cut(s) | 56, 661 |
| PpsI | GAGTC | 2 cut(s) | 56, 661 |
| PspN4I | GGNNCC | 1 cut(s) | 70 |
| RsaI | GTAC | 2 cut(s) | 293, 698 |
| RsaNI | GTAC | 2 cut(s) | 292, 697 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 1 cut(s) | 569 |
| SatI | GCNGC | 1 cut(s) | 492 |
| SchI | GAGTC | 2 cut(s) | 56, 662 |
| SduI | GDGCHC | 2 cut(s) | 239, 397 |
| SetI | ASST | 7 cut(s) | 88, 96, 232, 460, 487, 631, 638 |
| SfaNI | GCATC | 2 cut(s) | 324, 607 |
| SfuI | TTCGAA | 2 cut(s) | 125, 143 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 3 cut(s) | 45, 111, 692 |
| SmoI | CTYRAG | 3 cut(s) | 45, 111, 692 |
| Sse9I | AATT | 3 cut(s) | 282, 312, 593 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaqI | TCGA | 4 cut(s) | 125, 143, 226, 706 |
| TasI | AATT | 3 cut(s) | 282, 312, 593 |
| TatI | WGTACW | 2 cut(s) | 291, 696 |
| TfiI | GAWTC | 1 cut(s) | 212 |
| Tru1I | TTAA | 1 cut(s) | 569 |
| Tru9I | TTAA | 1 cut(s) | 569 |
| TseI | GCWGC | 1 cut(s) | 491 |
| TspDTI | ATGAA | 5 cut(s) | 149, 153, 167, 401, 586 |
| TspGWI | ACGGA | 1 cut(s) | 19 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 501 |
| XapI | RAATTY | 1 cut(s) | 593 |
| XceI | RCATGY | 1 cut(s) | 674 |
| XmnI | GAANNNNTTC | 1 cut(s) | 509 |