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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 387 |
| AccB1I | GGYRCC | 2 cut(s) | 190, 387 |
| AccIII | TCCGGA | 1 cut(s) | 589 |
| AciI | CCGC | 1 cut(s) | 741 |
| AclWI | GGATC | 6 cut(s) | 37, 328, 437, 578, 611, 624 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcuI | CTGAAG | 1 cut(s) | 303 |
| AcyI | GRCGYC | 1 cut(s) | 182 |
| AfaI | GTAC | 5 cut(s) | 380, 389, 601, 746, 813 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 596 |
| AgsI | TTSAA | 4 cut(s) | 71, 214, 247, 332 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 312, 344 |
| AluBI | AGCT | 3 cut(s) | 177, 309, 822 |
| AluI | AGCT | 3 cut(s) | 177, 309, 822 |
| AlwI | GGATC | 6 cut(s) | 37, 328, 437, 578, 611, 624 |
| Aor13HI | TCCGGA | 1 cut(s) | 589 |
| AoxI | GGCC | 1 cut(s) | 489 |
| ApaI | GGGCCC | 1 cut(s) | 493 |
| ApeKI | GCWGC | 1 cut(s) | 20 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| Asp718I | GGTACC | 1 cut(s) | 387 |
| AspLEI | GCGC | 1 cut(s) | 677 |
| AspS9I | GGNCC | 2 cut(s) | 489, 490 |
| AsuHPI | GGTGA | 2 cut(s) | 245, 572 |
| BaeGI | GKGCMC | 1 cut(s) | 493 |
| BamHI | GGATCC | 1 cut(s) | 616 |
| BanI | GGYRCC | 2 cut(s) | 190, 387 |
| BanII | GRGCYC | 1 cut(s) | 493 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| BbvI | GCAGC | 1 cut(s) | 7 |
| BccI | CCATC | 1 cut(s) | 269 |
| BceAI | ACGGC | 1 cut(s) | 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 584, 618 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BclI | TGATCA | 2 cut(s) | 562, 696 |
| BfaI | CTAG | 1 cut(s) | 726 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BfoI | RGCGCY | 1 cut(s) | 678 |
| BisI | GCNGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 1 cut(s) | 528 |
| BmgT120I | GGNCC | 2 cut(s) | 489, 490 |
| BmiI | GGNNCC | 6 cut(s) | 192, 279, 389, 490, 491, 618 |
| BmrFI | CCNGG | 1 cut(s) | 528 |
| BmsI | GCATC | 1 cut(s) | 207 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpmI | CTGGAG | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 2 cut(s) | 527, 807 |
| BsaWI | WCCGGW | 1 cut(s) | 589 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 155, 185, 728, 758 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 596 |
| Bse1I | ACTGG | 3 cut(s) | 364, 572, 646 |
| BseAI | TCCGGA | 1 cut(s) | 589 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseDI | CCNNGG | 2 cut(s) | 527, 807 |
| BseGI | GGATG | 2 cut(s) | 586, 657 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 596 |
| BseNI | ACTGG | 3 cut(s) | 364, 572, 646 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 1 cut(s) | 493 |
| BseXI | GCAGC | 1 cut(s) | 7 |
| BseYI | CCCAGC | 1 cut(s) | 485 |
| BsgI | GTGCAG | 1 cut(s) | 480 |
| BshFI | GGCC | 1 cut(s) | 491 |
| BshNI | GGYRCC | 2 cut(s) | 190, 387 |
| BsiSI | CCGG | 1 cut(s) | 590 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 596 |
| BsmI | GAATGC | 2 cut(s) | 40, 711 |
| BsnI | GGCC | 1 cut(s) | 491 |
| Bsp120I | GGGCCC | 1 cut(s) | 489 |
| Bsp1286I | GDGCHC | 1 cut(s) | 493 |
| Bsp13I | TCCGGA | 1 cut(s) | 589 |
| Bsp143I | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| BspACI | CCGC | 1 cut(s) | 741 |
| BspANI | GGCC | 1 cut(s) | 491 |
| BspEI | TCCGGA | 1 cut(s) | 589 |
| BspLI | GGNNCC | 6 cut(s) | 192, 279, 389, 490, 491, 618 |
| BspMAI | CTGCAG | 1 cut(s) | 25 |
| BspPI | GGATC | 6 cut(s) | 37, 328, 437, 578, 611, 624 |
| BspT107I | GGYRCC | 2 cut(s) | 190, 387 |
| BsrI | ACTGG | 3 cut(s) | 364, 572, 646 |
| BssECI | CCNNGG | 2 cut(s) | 527, 807 |
| BssMI | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| BssNI | GRCGYC | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 807 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 1 cut(s) | 76 |
| Bst6I | CTCTTC | 1 cut(s) | 122 |
| BstACI | GRCGYC | 1 cut(s) | 182 |
| BstC8I | GCNNGC | 3 cut(s) | 84, 343, 709 |
| BstF5I | GGATG | 2 cut(s) | 586, 657 |
| BstH2I | RGCGCY | 1 cut(s) | 678 |
| BstHHI | GCGC | 1 cut(s) | 677 |
| BstKTI | GATC | 7 cut(s) | 45, 323, 445, 565, 573, 619, 699 |
| BstMBI | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstSCI | CCNGG | 1 cut(s) | 526 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| BstSLI | GKGCMC | 1 cut(s) | 493 |
| BstV1I | GCAGC | 1 cut(s) | 7 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BstX2I | RGATCY | 3 cut(s) | 42, 570, 616 |
| BstYI | RGATCY | 3 cut(s) | 42, 570, 616 |
| BsuRI | GGCC | 1 cut(s) | 491 |
| BtsCI | GGATG | 2 cut(s) | 586, 657 |
| BtsIMutI | CAGTG | 4 cut(s) | 357, 565, 620, 639 |
| Cac8I | GCNNGC | 3 cut(s) | 84, 343, 709 |
| CfoI | GCGC | 1 cut(s) | 677 |
| Cfr13I | GGNCC | 2 cut(s) | 489, 490 |
| CseI | GACGC | 2 cut(s) | 171, 639 |
| Csp6I | GTAC | 5 cut(s) | 379, 388, 600, 745, 812 |
| CviAII | CATG | 5 cut(s) | 274, 346, 427, 541, 763 |
| CviJI | RGCY | 6 cut(s) | 86, 177, 309, 491, 707, 822 |
| CviKI_1 | RGCY | 6 cut(s) | 86, 177, 309, 491, 707, 822 |
| CviQI | GTAC | 5 cut(s) | 379, 388, 600, 745, 812 |
| DpnI | GATC | 7 cut(s) | 44, 322, 444, 564, 572, 618, 698 |
| DpnII | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| Eam1104I | CTCTTC | 1 cut(s) | 122 |
| EarI | CTCTTC | 1 cut(s) | 122 |
| Eco130I | CCWWGG | 1 cut(s) | 807 |
| Eco24I | GRGCYC | 1 cut(s) | 493 |
| Eco32I | GATATC | 1 cut(s) | 772 |
| Eco57I | CTGAAG | 1 cut(s) | 303 |
| EcoO109I | RGGNCCY | 1 cut(s) | 489 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoRV | GATATC | 1 cut(s) | 772 |
| EcoT14I | CCWWGG | 1 cut(s) | 807 |
| EcoT38I | GRGCYC | 1 cut(s) | 493 |
| ErhI | CCWWGG | 1 cut(s) | 807 |
| FaeI | CATG | 5 cut(s) | 277, 349, 430, 544, 766 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 495, 527 |
| FatI | CATG | 5 cut(s) | 273, 345, 426, 540, 762 |
| FauI | CCCGC | 1 cut(s) | 734 |
| FbaI | TGATCA | 2 cut(s) | 562, 696 |
| Fnu4HI | GCNGC | 1 cut(s) | 21 |
| FokI | GGATG | 2 cut(s) | 573, 664 |
| FriOI | GRGCYC | 1 cut(s) | 493 |
| Fsp4HI | GCNGC | 1 cut(s) | 21 |
| FspBI | CTAG | 1 cut(s) | 726 |
| GlaI | GCGC | 1 cut(s) | 676 |
| GluI | GCNGC | 1 cut(s) | 21 |
| GsaI | CCCAGC | 1 cut(s) | 489 |
| GsuI | CTGGAG | 1 cut(s) | 663 |
| HaeII | RGCGCY | 1 cut(s) | 678 |
| HaeIII | GGCC | 1 cut(s) | 491 |
| HapII | CCGG | 1 cut(s) | 590 |
| HgaI | GACGC | 2 cut(s) | 171, 639 |
| HhaI | GCGC | 1 cut(s) | 677 |
| Hin1I | GRCGYC | 1 cut(s) | 182 |
| Hin1II | CATG | 5 cut(s) | 277, 349, 430, 544, 766 |
| Hin6I | GCGC | 1 cut(s) | 675 |
| HinP1I | GCGC | 1 cut(s) | 675 |
| HinfI | GANTC | 2 cut(s) | 158, 206 |
| HpaII | CCGG | 1 cut(s) | 590 |
| HphI | GGTGA | 2 cut(s) | 245, 572 |
| Hpy166II | GTNNAC | 2 cut(s) | 379, 424 |
| Hpy188I | TCNGA | 3 cut(s) | 163, 325, 681 |
| Hpy188III | TCNNGA | 3 cut(s) | 574, 590, 751 |
| Hpy8I | GTNNAC | 2 cut(s) | 379, 424 |
| HpyAV | CCTTC | 2 cut(s) | 456, 590 |
| HpyCH4III | ACNGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 6 cut(s) | 23, 38, 341, 369, 434, 461 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| Hsp92I | GRCGYC | 1 cut(s) | 182 |
| Hsp92II | CATG | 5 cut(s) | 277, 349, 430, 544, 766 |
| HspAI | GCGC | 1 cut(s) | 675 |
| Kpn2I | TCCGGA | 1 cut(s) | 589 |
| KpnI | GGTACC | 1 cut(s) | 391 |
| Ksp22I | TGATCA | 2 cut(s) | 562, 696 |
| Kzo9I | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| Lsp1109I | GCAGC | 1 cut(s) | 7 |
| LweI | GCATC | 1 cut(s) | 207 |
| MaeI | CTAG | 1 cut(s) | 726 |
| MaeIII | GTNAC | 2 cut(s) | 355, 514 |
| MalI | GATC | 7 cut(s) | 44, 322, 444, 564, 572, 618, 698 |
| MboI | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| MboII | GAAGA | 4 cut(s) | 139, 164, 167, 226 |
| MflI | RGATCY | 3 cut(s) | 42, 570, 616 |
| MhlI | GDGCHC | 1 cut(s) | 493 |
| MluCI | AATT | 8 cut(s) | 66, 242, 364, 401, 553, 579, 692, 700 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MmeI | TCCRAC | 1 cut(s) | 77 |
| MroI | TCCGGA | 1 cut(s) | 589 |
| MseI | TTAA | 2 cut(s) | 78, 552 |
| MslI | CAYNNNNRTG | 2 cut(s) | 374, 456 |
| MspI | CCGG | 1 cut(s) | 590 |
| MspR9I | CCNGG | 1 cut(s) | 528 |
| Mva1269I | GAATGC | 2 cut(s) | 40, 711 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NdeII | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| NlaIII | CATG | 5 cut(s) | 277, 349, 430, 544, 766 |
| NlaIV | GGNNCC | 6 cut(s) | 192, 279, 389, 490, 491, 618 |
| NmuCI | GTSAC | 1 cut(s) | 355 |
| PctI | GAATGC | 2 cut(s) | 40, 711 |
| PfeI | GAWTC | 1 cut(s) | 206 |
| PkrI | GCNGC | 1 cut(s) | 22 |
| PleI | GAGTC | 1 cut(s) | 152 |
| PpsI | GAGTC | 1 cut(s) | 152 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspFI | CCCAGC | 1 cut(s) | 485 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 6 cut(s) | 192, 279, 389, 490, 491, 618 |
| PspOMI | GGGCCC | 1 cut(s) | 489 |
| PspPI | GGNCC | 2 cut(s) | 489, 490 |
| PstI | CTGCAG | 1 cut(s) | 25 |
| PsuI | RGATCY | 3 cut(s) | 42, 570, 616 |
| RsaI | GTAC | 5 cut(s) | 380, 389, 601, 746, 813 |
| RsaNI | GTAC | 5 cut(s) | 379, 388, 600, 745, 812 |
| RseI | CAYNNNNRTG | 2 cut(s) | 374, 456 |
| SaqAI | TTAA | 2 cut(s) | 78, 552 |
| SatI | GCNGC | 1 cut(s) | 21 |
| Sau3AI | GATC | 7 cut(s) | 42, 320, 442, 562, 570, 616, 696 |
| Sau96I | GGNCC | 2 cut(s) | 489, 490 |
| SchI | GAGTC | 1 cut(s) | 152 |
| ScrFI | CCNGG | 1 cut(s) | 528 |
| SduI | GDGCHC | 1 cut(s) | 493 |
| SfaNI | GCATC | 1 cut(s) | 207 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 374, 456 |
| Sse9I | AATT | 8 cut(s) | 66, 242, 364, 401, 553, 579, 692, 700 |
| SsiI | CCGC | 1 cut(s) | 741 |
| SspMI | CTAG | 1 cut(s) | 726 |
| StyD4I | CCNGG | 1 cut(s) | 526 |
| StyI | CCWWGG | 1 cut(s) | 807 |
| TaaI | ACNGT | 1 cut(s) | 76 |
| TasI | AATT | 8 cut(s) | 66, 242, 364, 401, 553, 579, 692, 700 |
| TfiI | GAWTC | 1 cut(s) | 206 |
| Tru1I | TTAA | 2 cut(s) | 78, 552 |
| Tru9I | TTAA | 2 cut(s) | 78, 552 |
| TscAI | CASTG | 4 cut(s) | 364, 572, 627, 646 |
| TseFI | GTSAC | 1 cut(s) | 355 |
| TseI | GCWGC | 1 cut(s) | 20 |
| Tsp45I | GTSAC | 1 cut(s) | 355 |
| TspDTI | ATGAA | 6 cut(s) | 78, 198, 301, 529, 575, 683 |
| TspRI | CASTG | 4 cut(s) | 364, 572, 627, 646 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XspI | CTAG | 1 cut(s) | 726 |