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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 127 |
| AcsI | RAATTY | 1 cut(s) | 265 |
| AflII | CTTAAG | 1 cut(s) | 164 |
| AgsI | TTSAA | 4 cut(s) | 38, 270, 299, 311 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 203, 235 |
| AoxI | GGCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 2 cut(s) | 170, 244 |
| ApoI | RAATTY | 1 cut(s) | 265 |
| AspLEI | GCGC | 1 cut(s) | 206 |
| AsuC2I | CCSGG | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 1 cut(s) | 376 |
| BalI | TGGCCA | 1 cut(s) | 129 |
| BbvI | GCAGC | 2 cut(s) | 157, 231 |
| BccI | CCATC | 2 cut(s) | 194, 223 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcnI | CCSGG | 1 cut(s) | 337 |
| BfaI | CTAG | 1 cut(s) | 30 |
| BfrI | CTTAAG | 1 cut(s) | 164 |
| BisI | GCNGC | 2 cut(s) | 171, 245 |
| BlsI | GCNGC | 2 cut(s) | 172, 246 |
| Bme1390I | CCNGG | 1 cut(s) | 337 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmrFI | CCNGG | 1 cut(s) | 337 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpuMI | CCSGG | 1 cut(s) | 337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 224, 254 |
| BseGI | GGATG | 1 cut(s) | 229 |
| BseXI | GCAGC | 2 cut(s) | 157, 231 |
| BseYI | CCCAGC | 1 cut(s) | 428 |
| BshFI | GGCC | 1 cut(s) | 129 |
| BsiSI | CCGG | 1 cut(s) | 336 |
| BsnI | GGCC | 1 cut(s) | 129 |
| Bsp143I | GATC | 1 cut(s) | 412 |
| BspANI | GGCC | 1 cut(s) | 129 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspTI | CTTAAG | 1 cut(s) | 164 |
| BssMI | GATC | 1 cut(s) | 412 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 88 |
| BstAFI | CTTAAG | 1 cut(s) | 164 |
| BstF5I | GGATG | 1 cut(s) | 229 |
| BstHHI | GCGC | 1 cut(s) | 206 |
| BstKTI | GATC | 1 cut(s) | 415 |
| BstMBI | GATC | 1 cut(s) | 412 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 1 cut(s) | 335 |
| BstV1I | GCAGC | 2 cut(s) | 157, 231 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BsuRI | GGCC | 1 cut(s) | 129 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 229 |
| BtsI | GCAGTG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 213 |
| CfoI | GCGC | 1 cut(s) | 206 |
| CviAII | CATG | 4 cut(s) | 71, 146, 159, 323 |
| CviJI | RGCY | 4 cut(s) | 69, 129, 170, 428 |
| CviKI_1 | RGCY | 4 cut(s) | 69, 129, 170, 428 |
| DpnI | GATC | 1 cut(s) | 414 |
| DpnII | GATC | 1 cut(s) | 412 |
| EaeI | YGGCCR | 1 cut(s) | 127 |
| EcoRI | GAATTC | 1 cut(s) | 265 |
| FaeI | CATG | 4 cut(s) | 74, 149, 162, 326 |
| FaiI | YATR | 6 cut(s) | 72, 147, 160, 324, 354, 442 |
| FatI | CATG | 4 cut(s) | 70, 145, 158, 322 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 2 cut(s) | 171, 245 |
| FokI | GGATG | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 2 cut(s) | 171, 245 |
| FspBI | CTAG | 1 cut(s) | 30 |
| GlaI | GCGC | 1 cut(s) | 205 |
| GluI | GCNGC | 2 cut(s) | 171, 245 |
| GsaI | CCCAGC | 1 cut(s) | 432 |
| HaeIII | GGCC | 1 cut(s) | 129 |
| HapII | CCGG | 1 cut(s) | 336 |
| HhaI | GCGC | 1 cut(s) | 206 |
| Hin1II | CATG | 4 cut(s) | 74, 149, 162, 326 |
| Hin6I | GCGC | 1 cut(s) | 204 |
| HinP1I | GCGC | 1 cut(s) | 204 |
| HinfI | GANTC | 3 cut(s) | 155, 281, 343 |
| HpaII | CCGG | 1 cut(s) | 336 |
| HphI | GGTGA | 1 cut(s) | 376 |
| Hpy166II | GTNNAC | 2 cut(s) | 109, 143 |
| Hpy188I | TCNGA | 1 cut(s) | 255 |
| Hpy8I | GTNNAC | 2 cut(s) | 109, 143 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 88 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 247, 352 |
| Hsp92II | CATG | 4 cut(s) | 74, 149, 162, 326 |
| HspAI | GCGC | 1 cut(s) | 204 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| Kzo9I | GATC | 1 cut(s) | 412 |
| LmnI | GCTCC | 1 cut(s) | 66 |
| LpnPI | CCDG | 3 cut(s) | 111, 349, 414 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 231 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 1 cut(s) | 30 |
| MaeIII | GTNAC | 2 cut(s) | 79, 316 |
| MalI | GATC | 1 cut(s) | 414 |
| MboI | GATC | 1 cut(s) | 412 |
| MboII | GAAGA | 5 cut(s) | 209, 271, 274, 323, 352 |
| MfeI | CAATTG | 2 cut(s) | 41, 306 |
| MlsI | TGGCCA | 1 cut(s) | 129 |
| MluCI | AATT | 4 cut(s) | 41, 265, 306, 389 |
| MluNI | TGGCCA | 1 cut(s) | 129 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MmeI | TCCRAC | 1 cut(s) | 70 |
| MnlI | CCTC | 3 cut(s) | 67, 249, 373 |
| Mox20I | TGGCCA | 1 cut(s) | 129 |
| MscI | TGGCCA | 1 cut(s) | 129 |
| MseI | TTAA | 1 cut(s) | 165 |
| Msp20I | TGGCCA | 1 cut(s) | 129 |
| MspCI | CTTAAG | 1 cut(s) | 164 |
| MspI | CCGG | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 337 |
| MunI | CAATTG | 2 cut(s) | 41, 306 |
| NciI | CCSGG | 1 cut(s) | 337 |
| NdeII | GATC | 1 cut(s) | 412 |
| NlaIII | CATG | 4 cut(s) | 74, 149, 162, 326 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PfeI | GAWTC | 2 cut(s) | 155, 343 |
| PkrI | GCNGC | 2 cut(s) | 172, 246 |
| PleI | GAGTC | 1 cut(s) | 289 |
| PpsI | GAGTC | 1 cut(s) | 289 |
| PspFI | CCCAGC | 1 cut(s) | 428 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| SaqAI | TTAA | 1 cut(s) | 165 |
| SatI | GCNGC | 2 cut(s) | 171, 245 |
| Sau3AI | GATC | 1 cut(s) | 412 |
| SchI | GAGTC | 1 cut(s) | 290 |
| ScrFI | CCNGG | 1 cut(s) | 337 |
| SetI | ASST | 3 cut(s) | 276, 366, 407 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SmlI | CTYRAG | 1 cut(s) | 164 |
| SmoI | CTYRAG | 1 cut(s) | 164 |
| Sse9I | AATT | 4 cut(s) | 41, 265, 306, 389 |
| SspMI | CTAG | 1 cut(s) | 30 |
| StyD4I | CCNGG | 1 cut(s) | 335 |
| TaaI | ACNGT | 2 cut(s) | 55, 88 |
| TaqI | TCGA | 1 cut(s) | 284 |
| TasI | AATT | 4 cut(s) | 41, 265, 306, 389 |
| TfiI | GAWTC | 2 cut(s) | 155, 343 |
| Tru1I | TTAA | 1 cut(s) | 165 |
| Tru9I | TTAA | 1 cut(s) | 165 |
| TscAI | CASTG | 2 cut(s) | 91, 213 |
| TseI | GCWGC | 2 cut(s) | 170, 244 |
| TspDTI | ATGAA | 1 cut(s) | 147 |
| TspRI | CASTG | 2 cut(s) | 91, 213 |
| Vha464I | CTTAAG | 1 cut(s) | 164 |
| XapI | RAATTY | 1 cut(s) | 265 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 30 |