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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 627 |
| AccB1I | GGYRCC | 1 cut(s) | 403 |
| AccI | GTMKAC | 1 cut(s) | 636 |
| AccIII | TCCGGA | 1 cut(s) | 802 |
| AciI | CCGC | 1 cut(s) | 194 |
| AclWI | GGATC | 4 cut(s) | 541, 794, 824, 837 |
| AcsI | RAATTY | 2 cut(s) | 455, 925 |
| AfaI | GTAC | 3 cut(s) | 381, 472, 968 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 809 |
| AflIII | ACRYGT | 1 cut(s) | 91 |
| AgsI | TTSAA | 4 cut(s) | 89, 242, 427, 491 |
| AjnI | CCWGG | 1 cut(s) | 739 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 525, 557 |
| AluBI | AGCT | 4 cut(s) | 139, 289, 390, 480 |
| AluI | AGCT | 4 cut(s) | 139, 289, 390, 480 |
| Alw21I | GWGCWC | 1 cut(s) | 154 |
| Alw26I | GTCTC | 3 cut(s) | 220, 350, 456 |
| AlwI | GGATC | 4 cut(s) | 541, 794, 824, 837 |
| Ama87I | CYCGRG | 1 cut(s) | 769 |
| Aor13HI | TCCGGA | 1 cut(s) | 802 |
| AoxI | GGCC | 3 cut(s) | 278, 702, 919 |
| ApaI | GGGCCC | 1 cut(s) | 706 |
| ApeKI | GCWGC | 1 cut(s) | 1050 |
| ApoI | RAATTY | 2 cut(s) | 455, 925 |
| AspS9I | GGNCC | 2 cut(s) | 702, 703 |
| AsuHPI | GGTGA | 2 cut(s) | 458, 785 |
| AvaI | CYCGRG | 1 cut(s) | 769 |
| BaeGI | GKGCMC | 1 cut(s) | 706 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 454, 487 |
| BamHI | GGATCC | 1 cut(s) | 829 |
| BanI | GGYRCC | 1 cut(s) | 403 |
| BanII | GRGCYC | 1 cut(s) | 706 |
| BbsI | GAAGAC | 3 cut(s) | 375, 456, 1074 |
| Bbv12I | GWGCWC | 1 cut(s) | 154 |
| BbvI | GCAGC | 1 cut(s) | 1062 |
| BccI | CCATC | 2 cut(s) | 23, 482 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 797, 831 |
| BciT130I | CCWGG | 1 cut(s) | 741 |
| BclI | TGATCA | 2 cut(s) | 775, 1075 |
| BcoDI | GTCTC | 3 cut(s) | 220, 350, 456 |
| BfaI | CTAG | 2 cut(s) | 887, 948 |
| BfmI | CTRYAG | 1 cut(s) | 870 |
| BisI | GCNGC | 1 cut(s) | 1051 |
| BlpI | GCTNAGC | 1 cut(s) | 391 |
| BlsI | GCNGC | 1 cut(s) | 1052 |
| Bme1390I | CCNGG | 1 cut(s) | 741 |
| BmeT110I | CYCGRG | 1 cut(s) | 769 |
| BmgT120I | GGNCC | 2 cut(s) | 702, 703 |
| BmiI | GGNNCC | 3 cut(s) | 405, 704, 831 |
| BmrFI | CCNGG | 1 cut(s) | 741 |
| BmsI | GCATC | 2 cut(s) | 420, 1071 |
| BpiI | GAAGAC | 3 cut(s) | 375, 456, 1074 |
| BpmI | CTGGAG | 2 cut(s) | 69, 876 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 391 |
| BsaBI | GATNNNNATC | 2 cut(s) | 132, 168 |
| BsaI | GGTCTC | 1 cut(s) | 220 |
| BsaWI | WCCGGW | 1 cut(s) | 802 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 809 |
| Bse1I | ACTGG | 1 cut(s) | 859 |
| Bse8I | GATNNNNATC | 2 cut(s) | 132, 168 |
| BseAI | TCCGGA | 1 cut(s) | 802 |
| BseBI | CCWGG | 1 cut(s) | 741 |
| BseGI | GGATG | 4 cut(s) | 15, 169, 789, 870 |
| BseJI | GATNNNNATC | 2 cut(s) | 132, 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 809 |
| BseMII | CTCAG | 2 cut(s) | 324, 387 |
| BseNI | ACTGG | 1 cut(s) | 859 |
| BseRI | GAGGAG | 2 cut(s) | 215, 1054 |
| BseSI | GKGCMC | 1 cut(s) | 706 |
| BseXI | GCAGC | 1 cut(s) | 1062 |
| BsgI | GTGCAG | 1 cut(s) | 867 |
| BshFI | GGCC | 3 cut(s) | 280, 704, 921 |
| BshNI | GGYRCC | 1 cut(s) | 403 |
| BsiHKAI | GWGCWC | 1 cut(s) | 154 |
| BsiHKCI | CYCGRG | 1 cut(s) | 769 |
| BsiSI | CCGG | 1 cut(s) | 803 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 809 |
| BsmAI | GTCTC | 3 cut(s) | 220, 350, 456 |
| BsmBI | CGTCTC | 1 cut(s) | 456 |
| BsmI | GAATGC | 2 cut(s) | 647, 933 |
| BsnI | GGCC | 3 cut(s) | 280, 704, 921 |
| Bso31I | GGTCTC | 1 cut(s) | 220 |
| BsoBI | CYCGRG | 1 cut(s) | 769 |
| Bsp120I | GGGCCC | 1 cut(s) | 702 |
| Bsp1286I | GDGCHC | 2 cut(s) | 154, 706 |
| Bsp13I | TCCGGA | 1 cut(s) | 802 |
| Bsp143I | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 391 |
| BspACI | CCGC | 1 cut(s) | 194 |
| BspANI | GGCC | 3 cut(s) | 280, 704, 921 |
| BspCNI | CTCAG | 2 cut(s) | 325, 386 |
| BspEI | TCCGGA | 1 cut(s) | 802 |
| BspLI | GGNNCC | 3 cut(s) | 405, 704, 831 |
| BspPI | GGATC | 4 cut(s) | 541, 794, 824, 837 |
| BspT107I | GGYRCC | 1 cut(s) | 403 |
| BspTNI | GGTCTC | 1 cut(s) | 220 |
| BsrI | ACTGG | 1 cut(s) | 859 |
| BssMI | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| Bst2UI | CCWGG | 1 cut(s) | 741 |
| Bst4CI | ACNGT | 6 cut(s) | 112, 122, 247, 361, 697, 733 |
| Bst6I | CTCTTC | 1 cut(s) | 905 |
| BstC8I | GCNNGC | 2 cut(s) | 255, 556 |
| BstDEI | CTNAG | 3 cut(s) | 333, 373, 391 |
| BstF5I | GGATG | 4 cut(s) | 15, 169, 789, 870 |
| BstKTI | GATC | 5 cut(s) | 536, 778, 802, 832, 1078 |
| BstMAI | GTCTC | 3 cut(s) | 220, 350, 456 |
| BstMBI | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 286, 401 |
| BstNI | CCWGG | 1 cut(s) | 741 |
| BstNSI | RCATGY | 1 cut(s) | 95 |
| BstSCI | CCNGG | 1 cut(s) | 739 |
| BstSFI | CTRYAG | 1 cut(s) | 870 |
| BstSLI | GKGCMC | 1 cut(s) | 706 |
| BstV1I | GCAGC | 1 cut(s) | 1062 |
| BstV2I | GAAGAC | 3 cut(s) | 375, 456, 1074 |
| BstX2I | RGATCY | 1 cut(s) | 829 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 22 |
| BstYI | RGATCY | 1 cut(s) | 829 |
| BsuRI | GGCC | 3 cut(s) | 280, 704, 921 |
| BtsCI | GGATG | 4 cut(s) | 15, 169, 789, 870 |
| BtsI | GCAGTG | 1 cut(s) | 813 |
| BtsIMutI | CAGTG | 2 cut(s) | 813, 852 |
| Cac8I | GCNNGC | 2 cut(s) | 255, 556 |
| Cfr13I | GGNCC | 2 cut(s) | 702, 703 |
| CseI | GACGC | 2 cut(s) | 384, 852 |
| Csp6I | GTAC | 3 cut(s) | 380, 471, 967 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 943, 978, 1086, 1121 |
| CviAII | CATG | 9 cut(s) | 22, 92, 146, 276, 559, 640, 754, 976, 985 |
| CviQI | GTAC | 3 cut(s) | 380, 471, 967 |
| DdeI | CTNAG | 3 cut(s) | 333, 373, 391 |
| DpnI | GATC | 5 cut(s) | 535, 777, 801, 831, 1077 |
| DpnII | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| Eam1104I | CTCTTC | 1 cut(s) | 905 |
| EarI | CTCTTC | 1 cut(s) | 905 |
| Eco24I | GRGCYC | 1 cut(s) | 706 |
| Eco31I | GGTCTC | 1 cut(s) | 220 |
| Eco88I | CYCGRG | 1 cut(s) | 769 |
| EcoO109I | RGGNCCY | 1 cut(s) | 702 |
| EcoRI | GAATTC | 1 cut(s) | 925 |
| EcoRII | CCWGG | 1 cut(s) | 739 |
| EcoT38I | GRGCYC | 1 cut(s) | 706 |
| Esp3I | CGTCTC | 1 cut(s) | 456 |
| FaeI | CATG | 9 cut(s) | 25, 95, 149, 279, 562, 643, 757, 979, 988 |
| FatI | CATG | 9 cut(s) | 21, 91, 145, 275, 558, 639, 753, 975, 984 |
| FbaI | TGATCA | 2 cut(s) | 775, 1075 |
| FblI | GTMKAC | 1 cut(s) | 636 |
| Fnu4HI | GCNGC | 1 cut(s) | 1051 |
| FokI | GGATG | 4 cut(s) | 2, 176, 796, 877 |
| FriOI | GRGCYC | 1 cut(s) | 706 |
| Fsp4HI | GCNGC | 1 cut(s) | 1051 |
| FspBI | CTAG | 2 cut(s) | 887, 948 |
| GluI | GCNGC | 1 cut(s) | 1051 |
| GsuI | CTGGAG | 2 cut(s) | 69, 876 |
| HaeIII | GGCC | 3 cut(s) | 280, 704, 921 |
| HapII | CCGG | 1 cut(s) | 803 |
| HgaI | GACGC | 2 cut(s) | 384, 852 |
| Hin1II | CATG | 9 cut(s) | 25, 95, 149, 279, 562, 643, 757, 979, 988 |
| HincII | GTYRAC | 1 cut(s) | 789 |
| HindII | GTYRAC | 1 cut(s) | 789 |
| HinfI | GANTC | 2 cut(s) | 371, 419 |
| HpaII | CCGG | 1 cut(s) | 803 |
| HphI | GGTGA | 2 cut(s) | 458, 785 |
| Hpy166II | GTNNAC | 2 cut(s) | 637, 789 |
| Hpy188I | TCNGA | 6 cut(s) | 225, 376, 461, 538, 904, 1080 |
| Hpy188III | TCNNGA | 2 cut(s) | 48, 803 |
| Hpy8I | GTNNAC | 2 cut(s) | 637, 789 |
| HpyAV | CCTTC | 2 cut(s) | 669, 803 |
| HpyCH4III | ACNGT | 6 cut(s) | 112, 122, 247, 361, 697, 733 |
| HpyCH4V | TGCA | 7 cut(s) | 66, 554, 582, 647, 674, 838, 884 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 286, 401 |
| HpyF3I | CTNAG | 3 cut(s) | 333, 373, 391 |
| Hsp92II | CATG | 9 cut(s) | 25, 95, 149, 279, 562, 643, 757, 979, 988 |
| Kpn2I | TCCGGA | 1 cut(s) | 802 |
| Ksp22I | TGATCA | 2 cut(s) | 775, 1075 |
| Kzo9I | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| LmnI | GCTCC | 2 cut(s) | 50, 157 |
| Lsp1109I | GCAGC | 1 cut(s) | 1062 |
| LweI | GCATC | 2 cut(s) | 420, 1071 |
| MaeI | CTAG | 2 cut(s) | 887, 948 |
| MaeIII | GTNAC | 2 cut(s) | 300, 727 |
| MalI | GATC | 5 cut(s) | 535, 777, 801, 831, 1077 |
| MboI | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| MboII | GAAGA | 8 cut(s) | 25, 322, 349, 380, 439, 461, 922, 1079 |
| MfeI | CAATTG | 1 cut(s) | 792 |
| MflI | RGATCY | 1 cut(s) | 829 |
| MhlI | GDGCHC | 2 cut(s) | 154, 706 |
| MluCI | AATT | 8 cut(s) | 4, 237, 383, 455, 666, 792, 898, 925 |
| MlyI | GAGTC | 1 cut(s) | 365 |
| MroI | TCCGGA | 1 cut(s) | 802 |
| MseI | TTAA | 3 cut(s) | 60, 228, 249 |
| MslI | CAYNNNNRTG | 2 cut(s) | 20, 587 |
| MspI | CCGG | 1 cut(s) | 803 |
| MspR9I | CCNGG | 1 cut(s) | 741 |
| MunI | CAATTG | 1 cut(s) | 792 |
| Mva1269I | GAATGC | 2 cut(s) | 647, 933 |
| MvaI | CCWGG | 1 cut(s) | 741 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 286, 401 |
| NdeII | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| NlaIII | CATG | 9 cut(s) | 25, 95, 149, 279, 562, 643, 757, 979, 988 |
| NlaIV | GGNNCC | 3 cut(s) | 405, 704, 831 |
| NmuCI | GTSAC | 1 cut(s) | 300 |
| NspI | RCATGY | 1 cut(s) | 95 |
| PciI | ACATGT | 1 cut(s) | 91 |
| PctI | GAATGC | 2 cut(s) | 647, 933 |
| PfeI | GAWTC | 1 cut(s) | 419 |
| PkrI | GCNGC | 1 cut(s) | 1052 |
| PleI | GAGTC | 1 cut(s) | 365 |
| PpsI | GAGTC | 1 cut(s) | 365 |
| PscI | ACATGT | 1 cut(s) | 91 |
| PsiI | TTATAA | 1 cut(s) | 627 |
| Psp6I | CCWGG | 1 cut(s) | 739 |
| PspGI | CCWGG | 1 cut(s) | 739 |
| PspN4I | GGNNCC | 3 cut(s) | 405, 704, 831 |
| PspOMI | GGGCCC | 1 cut(s) | 702 |
| PspPI | GGNCC | 2 cut(s) | 702, 703 |
| PsuI | RGATCY | 1 cut(s) | 829 |
| RsaI | GTAC | 3 cut(s) | 381, 472, 968 |
| RsaNI | GTAC | 3 cut(s) | 380, 471, 967 |
| RseI | CAYNNNNRTG | 2 cut(s) | 20, 587 |
| SaqAI | TTAA | 3 cut(s) | 60, 228, 249 |
| SatI | GCNGC | 1 cut(s) | 1051 |
| Sau3AI | GATC | 5 cut(s) | 533, 775, 799, 829, 1075 |
| Sau96I | GGNCC | 2 cut(s) | 702, 703 |
| SchI | GAGTC | 1 cut(s) | 365 |
| ScrFI | CCNGG | 1 cut(s) | 741 |
| SduI | GDGCHC | 2 cut(s) | 154, 706 |
| SfaNI | GCATC | 2 cut(s) | 420, 1071 |
| SfcI | CTRYAG | 1 cut(s) | 870 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 20, 587 |
| Sse9I | AATT | 8 cut(s) | 4, 237, 383, 455, 666, 792, 898, 925 |
| SsiI | CCGC | 1 cut(s) | 194 |
| SspMI | CTAG | 2 cut(s) | 887, 948 |
| StyD4I | CCNGG | 1 cut(s) | 739 |
| TaaI | ACNGT | 6 cut(s) | 112, 122, 247, 361, 697, 733 |
| TasI | AATT | 8 cut(s) | 4, 237, 383, 455, 666, 792, 898, 925 |
| TfiI | GAWTC | 1 cut(s) | 419 |
| Tru1I | TTAA | 3 cut(s) | 60, 228, 249 |
| Tru9I | TTAA | 3 cut(s) | 60, 228, 249 |
| TscAI | CASTG | 2 cut(s) | 820, 859 |
| TseFI | GTSAC | 1 cut(s) | 300 |
| TseI | GCWGC | 1 cut(s) | 1050 |
| Tsp45I | GTSAC | 1 cut(s) | 300 |
| TspDTI | ATGAA | 7 cut(s) | 17, 17, 134, 249, 381, 640, 742 |
| TspRI | CASTG | 2 cut(s) | 820, 859 |
| XapI | RAATTY | 2 cut(s) | 455, 925 |
| XceI | RCATGY | 1 cut(s) | 95 |
| XmiI | GTMKAC | 1 cut(s) | 636 |
| XspI | CTAG | 2 cut(s) | 887, 948 |