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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 196 |
| AciI | CCGC | 2 cut(s) | 59, 194 |
| AcoI | YGGCCR | 1 cut(s) | 510 |
| AcsI | RAATTY | 1 cut(s) | 268 |
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 139, 183 |
| AflII | CTTAAG | 3 cut(s) | 46, 383, 500 |
| AluBI | AGCT | 2 cut(s) | 209, 475 |
| AluI | AGCT | 2 cut(s) | 209, 475 |
| AoxI | GGCC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 2 cut(s) | 5, 475 |
| ApoI | RAATTY | 1 cut(s) | 268 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 284, 314, 316, 346 |
| BalI | TGGCCA | 1 cut(s) | 512 |
| BbvI | GCAGC | 1 cut(s) | 462 |
| BccI | CCATC | 1 cut(s) | 259 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BclI | TGATCA | 1 cut(s) | 454 |
| BfaI | CTAG | 2 cut(s) | 33, 237 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BfrI | CTTAAG | 3 cut(s) | 46, 383, 500 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 518 |
| BglII | AGATCT | 1 cut(s) | 35 |
| BisI | GCNGC | 2 cut(s) | 6, 476 |
| BlsI | GCNGC | 2 cut(s) | 7, 477 |
| BmsI | GCATC | 3 cut(s) | 17, 217, 384 |
| BsaBI | GATNNNNATC | 1 cut(s) | 453 |
| BsaJI | CCNNGG | 2 cut(s) | 273, 336 |
| BsaWI | WCCGGW | 1 cut(s) | 305 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 139, 183 |
| Bse1I | ACTGG | 1 cut(s) | 370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 453 |
| BseDI | CCNNGG | 2 cut(s) | 273, 336 |
| BseGI | GGATG | 3 cut(s) | 232, 332, 399 |
| BseJI | GATNNNNATC | 1 cut(s) | 453 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 139, 183 |
| BseMII | CTCAG | 1 cut(s) | 227 |
| BseNI | ACTGG | 1 cut(s) | 370 |
| BseRI | GAGGAG | 1 cut(s) | 433 |
| BseXI | GCAGC | 1 cut(s) | 462 |
| BsgI | GTGCAG | 1 cut(s) | 83 |
| Bsh1236I | CGCG | 1 cut(s) | 196 |
| Bsh1285I | CGRYCG | 1 cut(s) | 310 |
| BshFI | GGCC | 1 cut(s) | 512 |
| BsiEI | CGRYCG | 1 cut(s) | 310 |
| BsiSI | CCGG | 1 cut(s) | 306 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 139, 183 |
| BsnI | GGCC | 1 cut(s) | 512 |
| Bsp143I | GATC | 2 cut(s) | 35, 454 |
| BspACI | CCGC | 2 cut(s) | 59, 194 |
| BspANI | GGCC | 1 cut(s) | 512 |
| BspCNI | CTCAG | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 196 |
| BspHI | TCATGA | 1 cut(s) | 457 |
| BspTI | CTTAAG | 3 cut(s) | 46, 383, 500 |
| BsrI | ACTGG | 1 cut(s) | 370 |
| BssECI | CCNNGG | 2 cut(s) | 273, 336 |
| BssMI | GATC | 2 cut(s) | 35, 454 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| BstAFI | CTTAAG | 3 cut(s) | 46, 383, 500 |
| BstC8I | GCNNGC | 1 cut(s) | 16 |
| BstDEI | CTNAG | 2 cut(s) | 182, 213 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 181 |
| BstF5I | GGATG | 3 cut(s) | 232, 332, 399 |
| BstFNI | CGCG | 1 cut(s) | 196 |
| BstKTI | GATC | 2 cut(s) | 38, 457 |
| BstMBI | GATC | 2 cut(s) | 35, 454 |
| BstMCI | CGRYCG | 1 cut(s) | 310 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 170, 394, 403, 518 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstUI | CGCG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 1 cut(s) | 462 |
| BstX2I | RGATCY | 1 cut(s) | 35 |
| BstYI | RGATCY | 1 cut(s) | 35 |
| BsuRI | GGCC | 1 cut(s) | 512 |
| BtgZI | GCGATG | 1 cut(s) | 237 |
| BtsCI | GGATG | 3 cut(s) | 232, 332, 399 |
| BtsIMutI | CAGTG | 1 cut(s) | 363 |
| Cac8I | GCNNGC | 1 cut(s) | 16 |
| CciI | TCATGA | 1 cut(s) | 457 |
| CseI | GACGC | 1 cut(s) | 219 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 468, 503 |
| CviAII | CATG | 2 cut(s) | 458, 516 |
| CviJI | RGCY | 9 cut(s) | 5, 44, 143, 164, 209, 281, 475, 512, 521 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 44, 143, 164, 209, 281, 475, 512, 521 |
| DdeI | CTNAG | 2 cut(s) | 182, 213 |
| DpnI | GATC | 2 cut(s) | 37, 456 |
| DpnII | GATC | 2 cut(s) | 35, 454 |
| EaeI | YGGCCR | 1 cut(s) | 510 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 181 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaeI | CATG | 2 cut(s) | 461, 519 |
| FaiI | YATR | 8 cut(s) | 41, 204, 248, 408, 439, 441, 459, 517 |
| FatI | CATG | 2 cut(s) | 457, 515 |
| FauNDI | CATATG | 1 cut(s) | 439 |
| FbaI | TGATCA | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 476 |
| FokI | GGATG | 3 cut(s) | 239, 319, 406 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 476 |
| FspBI | CTAG | 2 cut(s) | 33, 237 |
| GluI | GCNGC | 2 cut(s) | 6, 476 |
| HaeIII | GGCC | 1 cut(s) | 512 |
| HapII | CCGG | 1 cut(s) | 306 |
| HgaI | GACGC | 1 cut(s) | 219 |
| Hin1II | CATG | 2 cut(s) | 461, 519 |
| HinfI | GANTC | 1 cut(s) | 341 |
| HpaII | CCGG | 1 cut(s) | 306 |
| Hpy188I | TCNGA | 3 cut(s) | 94, 337, 346 |
| Hpy188III | TCNNGA | 1 cut(s) | 458 |
| Hpy99I | CGWCG | 1 cut(s) | 304 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4IV | ACGT | 2 cut(s) | 73, 506 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 14, 64, 320, 397 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 170, 394, 403, 518 |
| HpyF3I | CTNAG | 2 cut(s) | 182, 213 |
| HpySE526I | ACGT | 2 cut(s) | 73, 506 |
| Hsp92II | CATG | 2 cut(s) | 461, 519 |
| Ksp22I | TGATCA | 1 cut(s) | 454 |
| Kzo9I | GATC | 2 cut(s) | 35, 454 |
| LpnPI | CCDG | 3 cut(s) | 232, 319, 351 |
| Lsp1109I | GCAGC | 1 cut(s) | 462 |
| LweI | GCATC | 3 cut(s) | 17, 217, 384 |
| MaeI | CTAG | 2 cut(s) | 33, 237 |
| MaeII | ACGT | 2 cut(s) | 73, 506 |
| MalI | GATC | 2 cut(s) | 37, 456 |
| MboI | GATC | 2 cut(s) | 35, 454 |
| MflI | RGATCY | 1 cut(s) | 35 |
| MlsI | TGGCCA | 1 cut(s) | 512 |
| MluCI | AATT | 3 cut(s) | 268, 411, 484 |
| MluNI | TGGCCA | 1 cut(s) | 512 |
| MnlI | CCTC | 9 cut(s) | 187, 244, 331, 369, 383, 411, 414, 439, 501 |
| Mox20I | TGGCCA | 1 cut(s) | 512 |
| MscI | TGGCCA | 1 cut(s) | 512 |
| MseI | TTAA | 4 cut(s) | 47, 120, 384, 501 |
| Msp20I | TGGCCA | 1 cut(s) | 512 |
| MspCI | CTTAAG | 3 cut(s) | 46, 383, 500 |
| MspI | CCGG | 1 cut(s) | 306 |
| MvnI | CGCG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 170, 394, 403, 518 |
| NdeI | CATATG | 1 cut(s) | 439 |
| NdeII | GATC | 2 cut(s) | 35, 454 |
| NlaIII | CATG | 2 cut(s) | 461, 519 |
| PagI | TCATGA | 1 cut(s) | 457 |
| PfeI | GAWTC | 1 cut(s) | 341 |
| PkrI | GCNGC | 2 cut(s) | 7, 477 |
| PsuI | RGATCY | 1 cut(s) | 35 |
| SaqAI | TTAA | 4 cut(s) | 47, 120, 384, 501 |
| SatI | GCNGC | 2 cut(s) | 6, 476 |
| Sau3AI | GATC | 2 cut(s) | 35, 454 |
| SetI | ASST | 9 cut(s) | 76, 103, 127, 179, 211, 279, 380, 477, 509 |
| SfaNI | GCATC | 3 cut(s) | 17, 217, 384 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SmlI | CTYRAG | 3 cut(s) | 46, 383, 500 |
| SmoI | CTYRAG | 3 cut(s) | 46, 383, 500 |
| Sse9I | AATT | 3 cut(s) | 268, 411, 484 |
| SsiI | CCGC | 2 cut(s) | 59, 194 |
| SspMI | CTAG | 2 cut(s) | 33, 237 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaiI | ACGT | 2 cut(s) | 76, 509 |
| TaqI | TCGA | 1 cut(s) | 23 |
| TasI | AATT | 3 cut(s) | 268, 411, 484 |
| TfiI | GAWTC | 1 cut(s) | 341 |
| Tru1I | TTAA | 4 cut(s) | 47, 120, 384, 501 |
| Tru9I | TTAA | 4 cut(s) | 47, 120, 384, 501 |
| TscAI | CASTG | 1 cut(s) | 370 |
| TseI | GCWGC | 2 cut(s) | 5, 475 |
| TspDTI | ATGAA | 1 cut(s) | 83 |
| TspRI | CASTG | 1 cut(s) | 370 |
| Vha464I | CTTAAG | 3 cut(s) | 46, 383, 500 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 181 |
| XapI | RAATTY | 1 cut(s) | 268 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 280 |
| XspI | CTAG | 2 cut(s) | 33, 237 |