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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 327 |
| AcuI | CTGAAG | 1 cut(s) | 216 |
| AfaI | GTAC | 1 cut(s) | 291 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 127 |
| AgsI | TTSAA | 2 cut(s) | 62, 142 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 21, 53, 167, 173, 199, 205 |
| AluBI | AGCT | 3 cut(s) | 114, 211, 280 |
| AluI | AGCT | 3 cut(s) | 114, 211, 280 |
| AoxI | GGCC | 3 cut(s) | 135, 159, 293 |
| ApeKI | GCWGC | 2 cut(s) | 83, 111 |
| ApoI | RAATTY | 1 cut(s) | 327 |
| AseI | ATTAAT | 2 cut(s) | 263, 267 |
| AsuHPI | GGTGA | 1 cut(s) | 57 |
| BbvI | GCAGC | 2 cut(s) | 95, 123 |
| BceAI | ACGGC | 1 cut(s) | 308 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 376 |
| BclI | TGATCA | 1 cut(s) | 336 |
| BfaI | CTAG | 1 cut(s) | 381 |
| BisI | GCNGC | 2 cut(s) | 84, 112 |
| BlsI | GCNGC | 2 cut(s) | 85, 113 |
| Bpu10I | CCTNAGC | 1 cut(s) | 281 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 127 |
| Bse1I | ACTGG | 2 cut(s) | 74, 112 |
| Bse3DI | GCAATG | 1 cut(s) | 247 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseMI | GCAATG | 1 cut(s) | 247 |
| BseMII | CTCAG | 1 cut(s) | 147 |
| BseNI | ACTGG | 2 cut(s) | 74, 112 |
| BseRI | GAGGAG | 1 cut(s) | 287 |
| BseXI | GCAGC | 2 cut(s) | 95, 123 |
| BshFI | GGCC | 3 cut(s) | 137, 161, 295 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BsnI | GGCC | 3 cut(s) | 137, 161, 295 |
| Bsp143I | GATC | 1 cut(s) | 336 |
| BspANI | GGCC | 3 cut(s) | 137, 161, 295 |
| BspCNI | CTCAG | 1 cut(s) | 148 |
| BspHI | TCATGA | 2 cut(s) | 300, 339 |
| BsrDI | GCAATG | 1 cut(s) | 247 |
| BsrI | ACTGG | 2 cut(s) | 74, 112 |
| BssMI | GATC | 1 cut(s) | 336 |
| Bst4CI | ACNGT | 1 cut(s) | 289 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 42, 192 |
| BstC8I | GCNNGC | 2 cut(s) | 135, 247 |
| BstDEI | CTNAG | 2 cut(s) | 156, 281 |
| BstKTI | GATC | 1 cut(s) | 339 |
| BstMBI | GATC | 1 cut(s) | 336 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 200, 246 |
| BstNSI | RCATGY | 1 cut(s) | 360 |
| BstV1I | GCAGC | 2 cut(s) | 95, 123 |
| BsuRI | GGCC | 3 cut(s) | 137, 161, 295 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| Cac8I | GCNNGC | 2 cut(s) | 135, 247 |
| CciI | TCATGA | 2 cut(s) | 300, 339 |
| Csp6I | GTAC | 1 cut(s) | 290 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 151, 186 |
| CviAII | CATG | 4 cut(s) | 301, 340, 357, 362 |
| CviJI | RGCY | 7 cut(s) | 114, 137, 161, 194, 211, 280, 295 |
| CviKI_1 | RGCY | 7 cut(s) | 114, 137, 161, 194, 211, 280, 295 |
| CviQI | GTAC | 1 cut(s) | 290 |
| DdeI | CTNAG | 2 cut(s) | 156, 281 |
| DpnI | GATC | 1 cut(s) | 338 |
| DpnII | GATC | 1 cut(s) | 336 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 42, 192 |
| EarI | CTCTTC | 3 cut(s) | 3, 42, 192 |
| Eco147I | AGGCCT | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 1 cut(s) | 216 |
| FaeI | CATG | 4 cut(s) | 304, 343, 360, 365 |
| FaiI | YATR | 4 cut(s) | 302, 341, 358, 363 |
| FatI | CATG | 4 cut(s) | 300, 339, 356, 361 |
| FbaI | TGATCA | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 2 cut(s) | 84, 112 |
| Fsp4HI | GCNGC | 2 cut(s) | 84, 112 |
| FspBI | CTAG | 1 cut(s) | 381 |
| GluI | GCNGC | 2 cut(s) | 84, 112 |
| HaeIII | GGCC | 3 cut(s) | 137, 161, 295 |
| Hin1II | CATG | 4 cut(s) | 304, 343, 360, 365 |
| HindIII | AAGCTT | 1 cut(s) | 278 |
| HinfI | GANTC | 2 cut(s) | 29, 62 |
| HphI | GGTGA | 1 cut(s) | 57 |
| Hpy166II | GTNNAC | 1 cut(s) | 373 |
| Hpy188I | TCNGA | 1 cut(s) | 151 |
| Hpy188III | TCNNGA | 3 cut(s) | 120, 301, 340 |
| Hpy8I | GTNNAC | 1 cut(s) | 373 |
| HpyAV | CCTTC | 3 cut(s) | 136, 298, 358 |
| HpyCH4III | ACNGT | 1 cut(s) | 289 |
| HpyCH4V | TGCA | 1 cut(s) | 104 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 200, 246 |
| HpyF3I | CTNAG | 2 cut(s) | 156, 281 |
| Hsp92II | CATG | 4 cut(s) | 304, 343, 360, 365 |
| Ksp22I | TGATCA | 1 cut(s) | 336 |
| Kzo9I | GATC | 1 cut(s) | 336 |
| LmnI | GCTCC | 2 cut(s) | 130, 384 |
| LpnPI | CCDG | 3 cut(s) | 87, 93, 119 |
| Lsp1109I | GCAGC | 2 cut(s) | 95, 123 |
| MaeI | CTAG | 1 cut(s) | 381 |
| MaeIII | GTNAC | 1 cut(s) | 76 |
| MalI | GATC | 1 cut(s) | 338 |
| MboI | GATC | 1 cut(s) | 336 |
| MboII | GAAGA | 5 cut(s) | 20, 59, 187, 190, 209 |
| MluCI | AATT | 5 cut(s) | 168, 264, 314, 327, 401 |
| MmeI | TCCRAC | 1 cut(s) | 165 |
| MnlI | CCTC | 6 cut(s) | 6, 12, 43, 151, 193, 265 |
| MseI | TTAA | 2 cut(s) | 263, 267 |
| MspA1I | CMGCKG | 1 cut(s) | 114 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 200, 246 |
| NdeII | GATC | 1 cut(s) | 336 |
| NlaIII | CATG | 4 cut(s) | 304, 343, 360, 365 |
| NmuCI | GTSAC | 1 cut(s) | 76 |
| NspI | RCATGY | 1 cut(s) | 360 |
| PacI | TTAATTAA | 1 cut(s) | 267 |
| PagI | TCATGA | 2 cut(s) | 300, 339 |
| PceI | AGGCCT | 1 cut(s) | 137 |
| PfeI | GAWTC | 2 cut(s) | 29, 62 |
| PkrI | GCNGC | 2 cut(s) | 85, 113 |
| PshBI | ATTAAT | 2 cut(s) | 263, 267 |
| PvuII | CAGCTG | 1 cut(s) | 114 |
| RsaI | GTAC | 1 cut(s) | 291 |
| RsaNI | GTAC | 1 cut(s) | 290 |
| SaqAI | TTAA | 2 cut(s) | 263, 267 |
| SatI | GCNGC | 2 cut(s) | 84, 112 |
| Sau3AI | GATC | 1 cut(s) | 336 |
| SetI | ASST | 8 cut(s) | 17, 39, 54, 116, 147, 213, 282, 350 |
| Sse9I | AATT | 5 cut(s) | 168, 264, 314, 327, 401 |
| SseBI | AGGCCT | 1 cut(s) | 137 |
| SspMI | CTAG | 1 cut(s) | 381 |
| StuI | AGGCCT | 1 cut(s) | 137 |
| TaaI | ACNGT | 1 cut(s) | 289 |
| TasI | AATT | 5 cut(s) | 168, 264, 314, 327, 401 |
| TfiI | GAWTC | 2 cut(s) | 29, 62 |
| Tru1I | TTAA | 2 cut(s) | 263, 267 |
| Tru9I | TTAA | 2 cut(s) | 263, 267 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 76 |
| TseI | GCWGC | 2 cut(s) | 83, 111 |
| Tsp45I | GTSAC | 1 cut(s) | 76 |
| TspDTI | ATGAA | 3 cut(s) | 105, 289, 317 |
| TspGWI | ACGGA | 1 cut(s) | 321 |
| TspRI | CASTG | 1 cut(s) | 81 |
| VspI | ATTAAT | 2 cut(s) | 263, 267 |
| XapI | RAATTY | 1 cut(s) | 327 |
| XceI | RCATGY | 1 cut(s) | 360 |
| XspI | CTAG | 1 cut(s) | 381 |