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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 646 |
| AciI | CCGC | 4 cut(s) | 710, 727, 747, 783 |
| AclWI | GGATC | 1 cut(s) | 526 |
| AcoI | YGGCCR | 1 cut(s) | 707 |
| AcyI | GRCGYC | 1 cut(s) | 647 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 146, 197, 198, 510 |
| AgeI | ACCGGT | 1 cut(s) | 365 |
| AgsI | TTSAA | 1 cut(s) | 701 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 128, 160 |
| AluBI | AGCT | 6 cut(s) | 29, 35, 182, 488, 686, 722 |
| AluI | AGCT | 6 cut(s) | 29, 35, 182, 488, 686, 722 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| AlwI | GGATC | 1 cut(s) | 526 |
| AoxI | GGCC | 2 cut(s) | 632, 707 |
| ApeKI | GCWGC | 4 cut(s) | 182, 203, 485, 616 |
| AsiGI | ACCGGT | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 597 |
| AspA2I | CCTAGG | 1 cut(s) | 635 |
| AspLEI | GCGC | 4 cut(s) | 649, 693, 763, 770 |
| AsuHPI | GGTGA | 2 cut(s) | 162, 409 |
| AvrII | CCTAGG | 1 cut(s) | 635 |
| BanI | GGYRCC | 1 cut(s) | 646 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| BbvI | GCAGC | 4 cut(s) | 169, 215, 497, 628 |
| BceAI | ACGGC | 1 cut(s) | 642 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 5 cut(s) | 174, 636, 687, 714, 723 |
| BfmI | CTRYAG | 2 cut(s) | 18, 36 |
| BfoI | RGCGCY | 4 cut(s) | 650, 694, 764, 771 |
| BglII | AGATCT | 1 cut(s) | 230 |
| BisI | GCNGC | 5 cut(s) | 183, 204, 486, 617, 710 |
| BlnI | CCTAGG | 1 cut(s) | 635 |
| BlsI | GCNGC | 5 cut(s) | 184, 205, 487, 618, 711 |
| BmiI | GGNNCC | 4 cut(s) | 6, 471, 648, 787 |
| BmrI | ACTGGG | 1 cut(s) | 652 |
| BmsI | GCATC | 1 cut(s) | 486 |
| BmuI | ACTGGG | 1 cut(s) | 652 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 1 cut(s) | 447 |
| Bsa29I | ATCGAT | 1 cut(s) | 678 |
| BsaHI | GRCGYC | 1 cut(s) | 647 |
| BsaJI | CCNNGG | 2 cut(s) | 222, 635 |
| BsaWI | WCCGGW | 2 cut(s) | 311, 365 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 146, 197, 198, 510 |
| Bse118I | RCCGGY | 1 cut(s) | 365 |
| Bse1I | ACTGG | 2 cut(s) | 92, 647 |
| BseCI | ATCGAT | 1 cut(s) | 678 |
| BseDI | CCNNGG | 2 cut(s) | 222, 635 |
| BseGI | GGATG | 2 cut(s) | 447, 571 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 146, 197, 198, 510 |
| BseMII | CTCAG | 1 cut(s) | 561 |
| BseNI | ACTGG | 2 cut(s) | 92, 647 |
| BseX3I | CGGCCG | 1 cut(s) | 707 |
| BseXI | GCAGC | 4 cut(s) | 169, 215, 497, 628 |
| BseYI | CCCAGC | 2 cut(s) | 693, 763 |
| BsgI | GTGCAG | 1 cut(s) | 93 |
| Bsh1285I | CGRYCG | 1 cut(s) | 710 |
| BshFI | GGCC | 2 cut(s) | 634, 709 |
| BshNI | GGYRCC | 1 cut(s) | 646 |
| BshTI | ACCGGT | 1 cut(s) | 365 |
| BshVI | ATCGAT | 1 cut(s) | 678 |
| BsiEI | CGRYCG | 1 cut(s) | 710 |
| BsiSI | CCGG | 2 cut(s) | 312, 366 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 146, 197, 198, 510 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BsnI | GGCC | 2 cut(s) | 634, 709 |
| Bsp143I | GATC | 2 cut(s) | 230, 531 |
| BspACI | CCGC | 4 cut(s) | 710, 727, 747, 783 |
| BspANI | GGCC | 2 cut(s) | 634, 709 |
| BspCNI | CTCAG | 1 cut(s) | 560 |
| BspDI | ATCGAT | 1 cut(s) | 678 |
| BspLI | GGNNCC | 4 cut(s) | 6, 471, 648, 787 |
| BspPI | GGATC | 1 cut(s) | 526 |
| BspT107I | GGYRCC | 1 cut(s) | 646 |
| BsrFI | RCCGGY | 1 cut(s) | 365 |
| BsrI | ACTGG | 2 cut(s) | 92, 647 |
| BssAI | RCCGGY | 1 cut(s) | 365 |
| BssECI | CCNNGG | 2 cut(s) | 222, 635 |
| BssMI | GATC | 2 cut(s) | 230, 531 |
| BssNI | GRCGYC | 1 cut(s) | 647 |
| BssT1I | CCWWGG | 2 cut(s) | 222, 635 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstACI | GRCGYC | 1 cut(s) | 647 |
| BstC8I | GCNNGC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 3 cut(s) | 255, 273, 547 |
| BstF5I | GGATG | 2 cut(s) | 447, 571 |
| BstH2I | RGCGCY | 4 cut(s) | 650, 694, 764, 771 |
| BstHHI | GCGC | 4 cut(s) | 649, 693, 763, 770 |
| BstKTI | GATC | 2 cut(s) | 233, 534 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 2 cut(s) | 230, 531 |
| BstMCI | CGRYCG | 1 cut(s) | 710 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 379, 613, 646, 744, 767 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 36 |
| BstV1I | GCAGC | 4 cut(s) | 169, 215, 497, 628 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstX2I | RGATCY | 2 cut(s) | 230, 531 |
| BstYI | RGATCY | 2 cut(s) | 230, 531 |
| BstZI | CGGCCG | 1 cut(s) | 707 |
| Bsu15I | ATCGAT | 1 cut(s) | 678 |
| BsuRI | GGCC | 2 cut(s) | 634, 709 |
| BsuTUI | ATCGAT | 1 cut(s) | 678 |
| BtsCI | GGATG | 2 cut(s) | 447, 571 |
| BtsI | GCAGTG | 3 cut(s) | 63, 105, 745 |
| BtsIMutI | CAGTG | 4 cut(s) | 63, 105, 640, 745 |
| Cac8I | GCNNGC | 1 cut(s) | 320 |
| CfoI | GCGC | 4 cut(s) | 649, 693, 763, 770 |
| Cfr10I | RCCGGY | 1 cut(s) | 365 |
| ClaI | ATCGAT | 1 cut(s) | 678 |
| CspAI | ACCGGT | 1 cut(s) | 365 |
| CviAII | CATG | 4 cut(s) | 210, 323, 604, 654 |
| DdeI | CTNAG | 3 cut(s) | 255, 273, 547 |
| DinI | GGCGCC | 1 cut(s) | 648 |
| DpnI | GATC | 2 cut(s) | 232, 533 |
| DpnII | GATC | 2 cut(s) | 230, 531 |
| EaeI | YGGCCR | 1 cut(s) | 707 |
| EagI | CGGCCG | 1 cut(s) | 707 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| EclXI | CGGCCG | 1 cut(s) | 707 |
| Eco130I | CCWWGG | 2 cut(s) | 222, 635 |
| Eco52I | CGGCCG | 1 cut(s) | 707 |
| EcoT14I | CCWWGG | 2 cut(s) | 222, 635 |
| EcoT22I | ATGCAT | 1 cut(s) | 609 |
| EgeI | GGCGCC | 1 cut(s) | 648 |
| EheI | GGCGCC | 1 cut(s) | 648 |
| ErhI | CCWWGG | 2 cut(s) | 222, 635 |
| FaeI | CATG | 4 cut(s) | 213, 326, 607, 657 |
| FaiI | YATR | 9 cut(s) | 38, 164, 211, 266, 324, 395, 539, 605, 655 |
| FatI | CATG | 4 cut(s) | 209, 322, 603, 653 |
| FauI | CCCGC | 1 cut(s) | 740 |
| Fnu4HI | GCNGC | 5 cut(s) | 183, 204, 486, 617, 710 |
| FokI | GGATG | 2 cut(s) | 454, 578 |
| Fsp4HI | GCNGC | 5 cut(s) | 183, 204, 486, 617, 710 |
| FspBI | CTAG | 5 cut(s) | 174, 636, 687, 714, 723 |
| GlaI | GCGC | 4 cut(s) | 648, 692, 762, 769 |
| GluI | GCNGC | 5 cut(s) | 183, 204, 486, 617, 710 |
| GsaI | CCCAGC | 2 cut(s) | 697, 767 |
| HaeII | RGCGCY | 4 cut(s) | 650, 694, 764, 771 |
| HaeIII | GGCC | 2 cut(s) | 634, 709 |
| HapII | CCGG | 2 cut(s) | 312, 366 |
| HhaI | GCGC | 4 cut(s) | 649, 693, 763, 770 |
| Hin1I | GRCGYC | 1 cut(s) | 647 |
| Hin1II | CATG | 4 cut(s) | 213, 326, 607, 657 |
| Hin6I | GCGC | 4 cut(s) | 647, 691, 761, 768 |
| HinP1I | GCGC | 4 cut(s) | 647, 691, 761, 768 |
| HinfI | GANTC | 1 cut(s) | 406 |
| HpaII | CCGG | 2 cut(s) | 312, 366 |
| HphI | GGTGA | 2 cut(s) | 162, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 295 |
| Hpy188I | TCNGA | 2 cut(s) | 550, 664 |
| Hpy188III | TCNNGA | 1 cut(s) | 789 |
| Hpy8I | GTNNAC | 1 cut(s) | 295 |
| HpyAV | CCTTC | 5 cut(s) | 46, 277, 321, 432, 475 |
| HpyCH4IV | ACGT | 2 cut(s) | 360, 377 |
| HpyCH4V | TGCA | 5 cut(s) | 61, 110, 185, 499, 607 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 379, 613, 646, 744, 767 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 273, 547 |
| HpySE526I | ACGT | 2 cut(s) | 360, 377 |
| Hsp92I | GRCGYC | 1 cut(s) | 647 |
| Hsp92II | CATG | 4 cut(s) | 213, 326, 607, 657 |
| HspAI | GCGC | 4 cut(s) | 647, 691, 761, 768 |
| KasI | GGCGCC | 1 cut(s) | 646 |
| Kzo9I | GATC | 2 cut(s) | 230, 531 |
| LmnI | GCTCC | 2 cut(s) | 10, 330 |
| Lsp1109I | GCAGC | 4 cut(s) | 169, 215, 497, 628 |
| LweI | GCATC | 1 cut(s) | 486 |
| MaeI | CTAG | 5 cut(s) | 174, 636, 687, 714, 723 |
| MaeII | ACGT | 2 cut(s) | 360, 377 |
| MaeIII | GTNAC | 3 cut(s) | 168, 361, 455 |
| MalI | GATC | 2 cut(s) | 232, 533 |
| MboI | GATC | 2 cut(s) | 230, 531 |
| MboII | GAAGA | 3 cut(s) | 79, 113, 447 |
| MflI | RGATCY | 2 cut(s) | 230, 531 |
| MluCI | AATT | 2 cut(s) | 141, 628 |
| Mly113I | GGCGCC | 1 cut(s) | 647 |
| MnlI | CCTC | 3 cut(s) | 319, 553, 660 |
| Mph1103I | ATGCAT | 1 cut(s) | 609 |
| MroXI | GAANNNNTTC | 1 cut(s) | 597 |
| MseI | TTAA | 2 cut(s) | 300, 384 |
| MslI | CAYNNNNRTG | 1 cut(s) | 512 |
| MspI | CCGG | 2 cut(s) | 312, 366 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 379, 613, 646, 744, 767 |
| NarI | GGCGCC | 1 cut(s) | 647 |
| NdeII | GATC | 2 cut(s) | 230, 531 |
| NlaIII | CATG | 4 cut(s) | 213, 326, 607, 657 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 471, 648, 787 |
| NmeAIII | GCCGAG | 1 cut(s) | 751 |
| NmuCI | GTSAC | 1 cut(s) | 168 |
| NsiI | ATGCAT | 1 cut(s) | 609 |
| NspI | RCATGY | 1 cut(s) | 607 |
| PdmI | GAANNNNTTC | 1 cut(s) | 597 |
| PfeI | GAWTC | 1 cut(s) | 406 |
| PinAI | ACCGGT | 1 cut(s) | 365 |
| PkrI | GCNGC | 5 cut(s) | 184, 205, 487, 618, 711 |
| PluTI | GGCGCC | 1 cut(s) | 650 |
| PspFI | CCCAGC | 2 cut(s) | 693, 763 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 471, 648, 787 |
| PsuI | RGATCY | 2 cut(s) | 230, 531 |
| RseI | CAYNNNNRTG | 1 cut(s) | 512 |
| SaqAI | TTAA | 2 cut(s) | 300, 384 |
| SatI | GCNGC | 5 cut(s) | 183, 204, 486, 617, 710 |
| Sau3AI | GATC | 2 cut(s) | 230, 531 |
| SfaNI | GCATC | 1 cut(s) | 486 |
| SfcI | CTRYAG | 2 cut(s) | 18, 36 |
| SfoI | GGCGCC | 1 cut(s) | 648 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 512 |
| SmlI | CTYRAG | 1 cut(s) | 462 |
| SmoI | CTYRAG | 1 cut(s) | 462 |
| Sse9I | AATT | 2 cut(s) | 141, 628 |
| SsiI | CCGC | 4 cut(s) | 710, 727, 747, 783 |
| SspDI | GGCGCC | 1 cut(s) | 646 |
| SspMI | CTAG | 5 cut(s) | 174, 636, 687, 714, 723 |
| StyI | CCWWGG | 2 cut(s) | 222, 635 |
| TaiI | ACGT | 2 cut(s) | 363, 380 |
| TaqI | TCGA | 3 cut(s) | 86, 678, 718 |
| TasI | AATT | 2 cut(s) | 141, 628 |
| TauI | GCSGC | 1 cut(s) | 712 |
| TfiI | GAWTC | 1 cut(s) | 406 |
| Tru1I | TTAA | 2 cut(s) | 300, 384 |
| Tru9I | TTAA | 2 cut(s) | 300, 384 |
| TscAI | CASTG | 4 cut(s) | 63, 112, 647, 745 |
| TseFI | GTSAC | 1 cut(s) | 168 |
| TseI | GCWGC | 4 cut(s) | 182, 203, 485, 616 |
| Tsp45I | GTSAC | 1 cut(s) | 168 |
| TspDTI | ATGAA | 6 cut(s) | 65, 80, 114, 179, 419, 458 |
| TspRI | CASTG | 4 cut(s) | 63, 112, 647, 745 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 286 |
| XmaJI | CCTAGG | 1 cut(s) | 635 |
| XmnI | GAANNNNTTC | 1 cut(s) | 597 |
| XspI | CTAG | 5 cut(s) | 174, 636, 687, 714, 723 |
| Zsp2I | ATGCAT | 1 cut(s) | 609 |