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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 50 |
| AccII | CGCG | 1 cut(s) | 682 |
| AciI | CCGC | 3 cut(s) | 48, 151, 829 |
| AclI | AACGTT | 1 cut(s) | 22 |
| AcsI | RAATTY | 3 cut(s) | 8, 329, 370 |
| AcuI | CTGAAG | 1 cut(s) | 942 |
| AfaI | GTAC | 3 cut(s) | 70, 592, 919 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 488, 845, 846 |
| AflIII | ACRYGT | 1 cut(s) | 316 |
| AgsI | TTSAA | 5 cut(s) | 91, 101, 193, 968, 1000 |
| AhlI | ACTAGT | 2 cut(s) | 383, 698 |
| AjnI | CCWGG | 2 cut(s) | 832, 1022 |
| AluBI | AGCT | 5 cut(s) | 241, 748, 766, 926, 1015 |
| AluI | AGCT | 5 cut(s) | 241, 748, 766, 926, 1015 |
| Alw26I | GTCTC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 1016 |
| AoxI | GGCC | 3 cut(s) | 433, 533, 836 |
| ApaI | GGGCCC | 1 cut(s) | 840 |
| ApeKI | GCWGC | 2 cut(s) | 134, 238 |
| ApoI | RAATTY | 3 cut(s) | 8, 329, 370 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 197 |
| AspLEI | GCGC | 2 cut(s) | 563, 682 |
| AspS9I | GGNCC | 4 cut(s) | 153, 434, 836, 837 |
| AsuHPI | GGTGA | 1 cut(s) | 327 |
| AvaI | CYCGRG | 1 cut(s) | 1016 |
| AvaII | GGWCC | 1 cut(s) | 153 |
| BaeGI | GKGCMC | 1 cut(s) | 840 |
| BanII | GRGCYC | 2 cut(s) | 840, 1030 |
| BauI | CACGAG | 2 cut(s) | 138, 624 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 2 cut(s) | 146, 250 |
| BccI | CCATC | 2 cut(s) | 242, 746 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 647, 681 |
| BciT130I | CCWGG | 2 cut(s) | 834, 1024 |
| BcoDI | GTCTC | 1 cut(s) | 135 |
| BcuI | ACTAGT | 2 cut(s) | 383, 698 |
| BfaI | CTAG | 3 cut(s) | 384, 699, 749 |
| BisI | GCNGC | 2 cut(s) | 135, 239 |
| BlsI | GCNGC | 2 cut(s) | 136, 240 |
| Bme1390I | CCNGG | 2 cut(s) | 834, 1024 |
| Bme18I | GGWCC | 1 cut(s) | 153 |
| BmeT110I | CYCGRG | 1 cut(s) | 1016 |
| BmgT120I | GGNCC | 4 cut(s) | 153, 434, 836, 837 |
| BmiI | GGNNCC | 1 cut(s) | 838 |
| BmrFI | CCNGG | 2 cut(s) | 834, 1024 |
| BmsI | GCATC | 3 cut(s) | 121, 655, 994 |
| Bpu10I | CCTNAGC | 1 cut(s) | 882 |
| Bsa29I | ATCGAT | 1 cut(s) | 663 |
| BsaAI | YACGTR | 1 cut(s) | 944 |
| BsaI | GGTCTC | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 4 cut(s) | 437, 832, 833, 1023 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 488, 845, 846 |
| BseBI | CCWGG | 2 cut(s) | 834, 1024 |
| BseCI | ATCGAT | 1 cut(s) | 663 |
| BseDI | CCNNGG | 4 cut(s) | 437, 832, 833, 1023 |
| BseGI | GGATG | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 488, 845, 846 |
| BseMII | CTCAG | 1 cut(s) | 873 |
| BseRI | GAGGAG | 1 cut(s) | 815 |
| BseSI | GKGCMC | 1 cut(s) | 840 |
| BseXI | GCAGC | 2 cut(s) | 146, 250 |
| BsgI | GTGCAG | 2 cut(s) | 737, 804 |
| Bsh1236I | CGCG | 1 cut(s) | 682 |
| BshFI | GGCC | 3 cut(s) | 435, 535, 838 |
| BshVI | ATCGAT | 1 cut(s) | 663 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1016 |
| BsiSI | CCGG | 1 cut(s) | 874 |
| BslFI | GGGAC | 2 cut(s) | 251, 709 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 488, 845, 846 |
| BsmAI | GTCTC | 1 cut(s) | 135 |
| BsmFI | GGGAC | 2 cut(s) | 251, 709 |
| BsnI | GGCC | 3 cut(s) | 435, 535, 838 |
| Bso31I | GGTCTC | 1 cut(s) | 135 |
| BsoBI | CYCGRG | 1 cut(s) | 1016 |
| Bsp120I | GGGCCC | 1 cut(s) | 836 |
| Bsp1286I | GDGCHC | 2 cut(s) | 840, 1030 |
| Bsp143I | GATC | 2 cut(s) | 660, 760 |
| BspACI | CCGC | 3 cut(s) | 48, 151, 829 |
| BspANI | GGCC | 3 cut(s) | 435, 535, 838 |
| BspCNI | CTCAG | 1 cut(s) | 874 |
| BspDI | ATCGAT | 1 cut(s) | 663 |
| BspFNI | CGCG | 1 cut(s) | 682 |
| BspHI | TCATGA | 2 cut(s) | 528, 978 |
| BspLI | GGNNCC | 1 cut(s) | 838 |
| BspTNI | GGTCTC | 1 cut(s) | 135 |
| BsrBI | CCGCTC | 1 cut(s) | 50 |
| BssECI | CCNNGG | 4 cut(s) | 437, 832, 833, 1023 |
| BssMI | GATC | 2 cut(s) | 660, 760 |
| BssSI | CACGAG | 2 cut(s) | 138, 624 |
| Bst2BI | CACGAG | 2 cut(s) | 138, 624 |
| Bst2UI | CCWGG | 2 cut(s) | 834, 1024 |
| Bst6I | CTCTTC | 1 cut(s) | 543 |
| BstBAI | YACGTR | 1 cut(s) | 944 |
| BstC8I | GCNNGC | 2 cut(s) | 301, 879 |
| BstDEI | CTNAG | 1 cut(s) | 882 |
| BstF5I | GGATG | 1 cut(s) | 309 |
| BstFNI | CGCG | 1 cut(s) | 682 |
| BstHHI | GCGC | 2 cut(s) | 563, 682 |
| BstKTI | GATC | 2 cut(s) | 663, 763 |
| BstMAI | GTCTC | 1 cut(s) | 135 |
| BstMBI | GATC | 2 cut(s) | 660, 760 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 745, 944 |
| BstNI | CCWGG | 2 cut(s) | 834, 1024 |
| BstNSI | RCATGY | 1 cut(s) | 320 |
| BstSCI | CCNGG | 2 cut(s) | 832, 1022 |
| BstSLI | GKGCMC | 1 cut(s) | 840 |
| BstUI | CGCG | 1 cut(s) | 682 |
| BstV1I | GCAGC | 2 cut(s) | 146, 250 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 752 |
| Bsu15I | ATCGAT | 1 cut(s) | 663 |
| BsuRI | GGCC | 3 cut(s) | 435, 535, 838 |
| BsuTUI | ATCGAT | 1 cut(s) | 663 |
| BtsCI | GGATG | 1 cut(s) | 309 |
| Cac8I | GCNNGC | 2 cut(s) | 301, 879 |
| CciI | TCATGA | 2 cut(s) | 528, 978 |
| CfoI | GCGC | 2 cut(s) | 563, 682 |
| Cfr13I | GGNCC | 4 cut(s) | 153, 434, 836, 837 |
| ClaI | ATCGAT | 1 cut(s) | 663 |
| Csp6I | GTAC | 3 cut(s) | 69, 591, 918 |
| CviAII | CATG | 5 cut(s) | 317, 529, 730, 845, 979 |
| CviQI | GTAC | 3 cut(s) | 69, 591, 918 |
| DdeI | CTNAG | 1 cut(s) | 882 |
| DpnI | GATC | 2 cut(s) | 662, 762 |
| DpnII | GATC | 2 cut(s) | 660, 760 |
| Eam1104I | CTCTTC | 1 cut(s) | 543 |
| EarI | CTCTTC | 1 cut(s) | 543 |
| EciI | GGCGGA | 1 cut(s) | 818 |
| Eco147I | AGGCCT | 1 cut(s) | 535 |
| Eco24I | GRGCYC | 2 cut(s) | 840, 1030 |
| Eco31I | GGTCTC | 1 cut(s) | 135 |
| Eco32I | GATATC | 1 cut(s) | 511 |
| Eco47I | GGWCC | 1 cut(s) | 153 |
| Eco57I | CTGAAG | 1 cut(s) | 942 |
| Eco88I | CYCGRG | 1 cut(s) | 1016 |
| EcoRI | GAATTC | 2 cut(s) | 329, 370 |
| EcoRII | CCWGG | 2 cut(s) | 832, 1022 |
| EcoRV | GATATC | 1 cut(s) | 511 |
| EcoT38I | GRGCYC | 2 cut(s) | 840, 1030 |
| FaeI | CATG | 5 cut(s) | 320, 532, 733, 848, 982 |
| FaqI | GGGAC | 2 cut(s) | 251, 709 |
| FatI | CATG | 5 cut(s) | 316, 528, 729, 844, 978 |
| FauNDI | CATATG | 1 cut(s) | 914 |
| Fnu4HI | GCNGC | 2 cut(s) | 135, 239 |
| FokI | GGATG | 1 cut(s) | 296 |
| FriOI | GRGCYC | 2 cut(s) | 840, 1030 |
| Fsp4HI | GCNGC | 2 cut(s) | 135, 239 |
| FspBI | CTAG | 3 cut(s) | 384, 699, 749 |
| GlaI | GCGC | 2 cut(s) | 562, 681 |
| GluI | GCNGC | 2 cut(s) | 135, 239 |
| HaeIII | GGCC | 3 cut(s) | 435, 535, 838 |
| HapII | CCGG | 1 cut(s) | 874 |
| HhaI | GCGC | 2 cut(s) | 563, 682 |
| Hin1II | CATG | 5 cut(s) | 320, 532, 733, 848, 982 |
| Hin6I | GCGC | 2 cut(s) | 561, 680 |
| HinP1I | GCGC | 2 cut(s) | 561, 680 |
| HinfI | GANTC | 3 cut(s) | 756, 815, 1019 |
| HpaII | CCGG | 1 cut(s) | 874 |
| HphI | GGTGA | 1 cut(s) | 327 |
| Hpy166II | GTNNAC | 2 cut(s) | 156, 629 |
| Hpy188I | TCNGA | 3 cut(s) | 19, 706, 992 |
| Hpy188III | TCNNGA | 5 cut(s) | 210, 529, 626, 968, 979 |
| Hpy8I | GTNNAC | 2 cut(s) | 156, 629 |
| HpyAV | CCTTC | 5 cut(s) | 157, 208, 388, 415, 976 |
| HpyCH4IV | ACGT | 2 cut(s) | 22, 943 |
| HpyCH4V | TGCA | 5 cut(s) | 134, 286, 292, 718, 821 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 745, 944 |
| HpyF3I | CTNAG | 1 cut(s) | 882 |
| HpySE526I | ACGT | 2 cut(s) | 22, 943 |
| Hsp92II | CATG | 5 cut(s) | 320, 532, 733, 848, 982 |
| HspAI | GCGC | 2 cut(s) | 561, 680 |
| Kzo9I | GATC | 2 cut(s) | 660, 760 |
| LmnI | GCTCC | 1 cut(s) | 397 |
| Lsp1109I | GCAGC | 2 cut(s) | 146, 250 |
| LweI | GCATC | 3 cut(s) | 121, 655, 994 |
| MaeI | CTAG | 3 cut(s) | 384, 699, 749 |
| MaeII | ACGT | 2 cut(s) | 22, 943 |
| MaeIII | GTNAC | 1 cut(s) | 379 |
| MalI | GATC | 2 cut(s) | 662, 762 |
| MbiI | CCGCTC | 1 cut(s) | 50 |
| MboI | GATC | 2 cut(s) | 660, 760 |
| MboII | GAAGA | 4 cut(s) | 103, 194, 530, 983 |
| MfeI | CAATTG | 4 cut(s) | 146, 287, 564, 867 |
| MhlI | GDGCHC | 2 cut(s) | 840, 1030 |
| MlyI | GAGTC | 1 cut(s) | 1028 |
| MnlI | CCTC | 7 cut(s) | 447, 525, 546, 685, 836, 856, 877 |
| MroXI | GAANNNNTTC | 1 cut(s) | 197 |
| MseI | TTAA | 4 cut(s) | 324, 615, 741, 891 |
| MspI | CCGG | 1 cut(s) | 874 |
| MspR9I | CCNGG | 2 cut(s) | 834, 1024 |
| MunI | CAATTG | 4 cut(s) | 146, 287, 564, 867 |
| MvaI | CCWGG | 2 cut(s) | 834, 1024 |
| MvnI | CGCG | 1 cut(s) | 682 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 745, 944 |
| NdeI | CATATG | 1 cut(s) | 914 |
| NdeII | GATC | 2 cut(s) | 660, 760 |
| NlaIII | CATG | 5 cut(s) | 320, 532, 733, 848, 982 |
| NlaIV | GGNNCC | 1 cut(s) | 838 |
| NmuCI | GTSAC | 1 cut(s) | 379 |
| NspI | RCATGY | 1 cut(s) | 320 |
| PaeR7I | CTCGAG | 1 cut(s) | 1016 |
| PagI | TCATGA | 2 cut(s) | 528, 978 |
| PasI | CCCWGGG | 1 cut(s) | 833 |
| PceI | AGGCCT | 1 cut(s) | 535 |
| PciI | ACATGT | 1 cut(s) | 316 |
| PdmI | GAANNNNTTC | 1 cut(s) | 197 |
| PfeI | GAWTC | 2 cut(s) | 756, 815 |
| PkrI | GCNGC | 2 cut(s) | 136, 240 |
| PleI | GAGTC | 1 cut(s) | 1027 |
| PpsI | GAGTC | 1 cut(s) | 1027 |
| Ppu21I | YACGTR | 1 cut(s) | 944 |
| PscI | ACATGT | 1 cut(s) | 316 |
| Psp1406I | AACGTT | 1 cut(s) | 22 |
| Psp6I | CCWGG | 2 cut(s) | 832, 1022 |
| PspGI | CCWGG | 2 cut(s) | 832, 1022 |
| PspN4I | GGNNCC | 1 cut(s) | 838 |
| PspOMI | GGGCCC | 1 cut(s) | 836 |
| PspPI | GGNCC | 4 cut(s) | 153, 434, 836, 837 |
| PspXI | VCTCGAGB | 1 cut(s) | 1016 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 213, 245 |
| RsaI | GTAC | 3 cut(s) | 70, 592, 919 |
| RsaNI | GTAC | 3 cut(s) | 69, 591, 918 |
| SaqAI | TTAA | 4 cut(s) | 324, 615, 741, 891 |
| SatI | GCNGC | 2 cut(s) | 135, 239 |
| Sau3AI | GATC | 2 cut(s) | 660, 760 |
| Sau96I | GGNCC | 4 cut(s) | 153, 434, 836, 837 |
| SchI | GAGTC | 1 cut(s) | 1028 |
| ScrFI | CCNGG | 2 cut(s) | 834, 1024 |
| SduI | GDGCHC | 2 cut(s) | 840, 1030 |
| SfaNI | GCATC | 3 cut(s) | 121, 655, 994 |
| Sfr274I | CTCGAG | 1 cut(s) | 1016 |
| SinI | GGWCC | 1 cut(s) | 153 |
| SlaI | CTCGAG | 1 cut(s) | 1016 |
| SmlI | CTYRAG | 1 cut(s) | 1016 |
| SmoI | CTYRAG | 1 cut(s) | 1016 |
| SpeI | ACTAGT | 2 cut(s) | 383, 698 |
| SseBI | AGGCCT | 1 cut(s) | 535 |
| SsiI | CCGC | 3 cut(s) | 48, 151, 829 |
| SspMI | CTAG | 3 cut(s) | 384, 699, 749 |
| StuI | AGGCCT | 1 cut(s) | 535 |
| StyD4I | CCNGG | 2 cut(s) | 832, 1022 |
| TaiI | ACGT | 2 cut(s) | 25, 946 |
| TaqI | TCGA | 5 cut(s) | 129, 243, 663, 759, 1017 |
| TatI | WGTACW | 2 cut(s) | 590, 917 |
| TfiI | GAWTC | 2 cut(s) | 756, 815 |
| Tru1I | TTAA | 4 cut(s) | 324, 615, 741, 891 |
| Tru9I | TTAA | 4 cut(s) | 324, 615, 741, 891 |
| TseFI | GTSAC | 1 cut(s) | 379 |
| TseI | GCWGC | 2 cut(s) | 134, 238 |
| Tsp45I | GTSAC | 1 cut(s) | 379 |
| TspDTI | ATGAA | 4 cut(s) | 275, 298, 967, 995 |
| TspGWI | ACGGA | 1 cut(s) | 922 |
| VpaK11BI | GGWCC | 1 cut(s) | 153 |
| XapI | RAATTY | 3 cut(s) | 8, 329, 370 |
| XceI | RCATGY | 1 cut(s) | 320 |
| XhoI | CTCGAG | 1 cut(s) | 1016 |
| XmnI | GAANNNNTTC | 1 cut(s) | 197 |
| XspI | CTAG | 3 cut(s) | 384, 699, 749 |