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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 516 |
| AccB1I | GGYRCC | 1 cut(s) | 508 |
| AccII | CGCG | 1 cut(s) | 187 |
| AciI | CCGC | 3 cut(s) | 134, 185, 187 |
| AclWI | GGATC | 2 cut(s) | 401, 477 |
| AcoI | YGGCCR | 1 cut(s) | 38 |
| AcuI | CTGAAG | 1 cut(s) | 283 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AlwI | GGATC | 2 cut(s) | 401, 477 |
| AoxI | GGCC | 1 cut(s) | 38 |
| AspS9I | GGNCC | 1 cut(s) | 24 |
| AvaII | GGWCC | 1 cut(s) | 24 |
| BanI | GGYRCC | 1 cut(s) | 508 |
| BccI | CCATC | 2 cut(s) | 251, 363 |
| BfaI | CTAG | 2 cut(s) | 105, 456 |
| BfmI | CTRYAG | 2 cut(s) | 66, 96 |
| BglII | AGATCT | 1 cut(s) | 157 |
| BisI | GCNGC | 1 cut(s) | 188 |
| BlsI | GCNGC | 1 cut(s) | 189 |
| Bme18I | GGWCC | 1 cut(s) | 24 |
| BmgT120I | GGNCC | 1 cut(s) | 24 |
| BmiI | GGNNCC | 3 cut(s) | 25, 238, 510 |
| BmsI | GCATC | 1 cut(s) | 4 |
| BsaAI | YACGTR | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 3 cut(s) | 19, 41, 185 |
| Bse1I | ACTGG | 1 cut(s) | 471 |
| BseDI | CCNNGG | 3 cut(s) | 19, 41, 185 |
| BseGI | GGATG | 3 cut(s) | 243, 277, 437 |
| BseMII | CTCAG | 1 cut(s) | 534 |
| BseNI | ACTGG | 1 cut(s) | 471 |
| Bsh1236I | CGCG | 1 cut(s) | 187 |
| BshFI | GGCC | 1 cut(s) | 40 |
| BshNI | GGYRCC | 1 cut(s) | 508 |
| BslFI | GGGAC | 3 cut(s) | 37, 361, 499 |
| BsmFI | GGGAC | 3 cut(s) | 37, 361, 499 |
| BsnI | GGCC | 1 cut(s) | 40 |
| Bsp1407I | TGTACA | 1 cut(s) | 204 |
| Bsp143I | GATC | 3 cut(s) | 157, 406, 469 |
| BspACI | CCGC | 3 cut(s) | 134, 185, 187 |
| BspANI | GGCC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 1 cut(s) | 533 |
| BspFNI | CGCG | 1 cut(s) | 187 |
| BspLI | GGNNCC | 3 cut(s) | 25, 238, 510 |
| BspPI | GGATC | 2 cut(s) | 401, 477 |
| BspT107I | GGYRCC | 1 cut(s) | 508 |
| BsrGI | TGTACA | 1 cut(s) | 204 |
| BsrI | ACTGG | 1 cut(s) | 471 |
| BssECI | CCNNGG | 3 cut(s) | 19, 41, 185 |
| BssMI | GATC | 3 cut(s) | 157, 406, 469 |
| BssT1I | CCWWGG | 1 cut(s) | 19 |
| Bst4CI | ACNGT | 1 cut(s) | 7 |
| BstAUI | TGTACA | 1 cut(s) | 204 |
| BstBAI | YACGTR | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 1 cut(s) | 138 |
| BstDEI | CTNAG | 2 cut(s) | 252, 520 |
| BstDSI | CCRYGG | 1 cut(s) | 185 |
| BstF5I | GGATG | 3 cut(s) | 243, 277, 437 |
| BstFNI | CGCG | 1 cut(s) | 187 |
| BstKTI | GATC | 3 cut(s) | 160, 409, 472 |
| BstMBI | GATC | 3 cut(s) | 157, 406, 469 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstSFI | CTRYAG | 2 cut(s) | 66, 96 |
| BstSNI | TACGTA | 1 cut(s) | 230 |
| BstUI | CGCG | 1 cut(s) | 187 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BsuRI | GGCC | 1 cut(s) | 40 |
| BtgI | CCRYGG | 1 cut(s) | 185 |
| BtsCI | GGATG | 3 cut(s) | 243, 277, 437 |
| BtsI | GCAGTG | 1 cut(s) | 356 |
| BtsIMutI | CAGTG | 1 cut(s) | 356 |
| Cac8I | GCNNGC | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 1 cut(s) | 24 |
| Cfr42I | CCGCGG | 1 cut(s) | 188 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 6 cut(s) | 314, 319, 323, 332, 368, 391 |
| CviJI | RGCY | 4 cut(s) | 40, 65, 239, 399 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 65, 239, 399 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 2 cut(s) | 252, 520 |
| DpnI | GATC | 3 cut(s) | 159, 408, 471 |
| DpnII | GATC | 3 cut(s) | 157, 406, 469 |
| EaeI | YGGCCR | 1 cut(s) | 38 |
| Eco105I | TACGTA | 1 cut(s) | 230 |
| Eco130I | CCWWGG | 1 cut(s) | 19 |
| Eco47I | GGWCC | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 19 |
| EcoT22I | ATGCAT | 1 cut(s) | 324 |
| ErhI | CCWWGG | 1 cut(s) | 19 |
| FaeI | CATG | 6 cut(s) | 317, 322, 326, 335, 371, 394 |
| FaiI | YATR | 9 cut(s) | 315, 320, 324, 333, 360, 369, 392, 516, 528 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 35 |
| FaqI | GGGAC | 3 cut(s) | 37, 361, 499 |
| FatI | CATG | 6 cut(s) | 313, 318, 322, 331, 367, 390 |
| Fnu4HI | GCNGC | 1 cut(s) | 188 |
| FokI | GGATG | 3 cut(s) | 230, 264, 444 |
| Fsp4HI | GCNGC | 1 cut(s) | 188 |
| FspBI | CTAG | 2 cut(s) | 105, 456 |
| GluI | GCNGC | 1 cut(s) | 188 |
| HaeIII | GGCC | 1 cut(s) | 40 |
| Hin1II | CATG | 6 cut(s) | 317, 322, 326, 335, 371, 394 |
| HinfI | GANTC | 4 cut(s) | 46, 142, 178, 265 |
| Hpy188I | TCNGA | 1 cut(s) | 302 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 161 |
| HpyAV | CCTTC | 2 cut(s) | 102, 280 |
| HpyCH4III | ACNGT | 1 cut(s) | 7 |
| HpyCH4IV | ACGT | 2 cut(s) | 229, 309 |
| HpyCH4V | TGCA | 3 cut(s) | 322, 425, 542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpyF3I | CTNAG | 2 cut(s) | 252, 520 |
| HpySE526I | ACGT | 2 cut(s) | 229, 309 |
| Hsp92II | CATG | 6 cut(s) | 317, 322, 326, 335, 371, 394 |
| KspI | CCGCGG | 1 cut(s) | 188 |
| Kzo9I | GATC | 3 cut(s) | 157, 406, 469 |
| LmnI | GCTCC | 1 cut(s) | 236 |
| LpnPI | CCDG | 8 cut(s) | 108, 146, 150, 273, 331, 392, 452, 507 |
| LweI | GCATC | 1 cut(s) | 4 |
| MaeI | CTAG | 2 cut(s) | 105, 456 |
| MaeII | ACGT | 2 cut(s) | 229, 309 |
| MaeIII | GTNAC | 1 cut(s) | 100 |
| MalI | GATC | 3 cut(s) | 159, 408, 471 |
| MboI | GATC | 3 cut(s) | 157, 406, 469 |
| MboII | GAAGA | 3 cut(s) | 167, 173, 289 |
| MfeI | CAATTG | 2 cut(s) | 208, 426 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 3 cut(s) | 191, 208, 426 |
| MlyI | GAGTC | 2 cut(s) | 151, 274 |
| MmeI | TCCRAC | 3 cut(s) | 202, 305, 467 |
| MnlI | CCTC | 4 cut(s) | 36, 105, 250, 257 |
| Mph1103I | ATGCAT | 1 cut(s) | 324 |
| MseI | TTAA | 2 cut(s) | 477, 537 |
| MspA1I | CMGCKG | 1 cut(s) | 187 |
| MunI | CAATTG | 2 cut(s) | 208, 426 |
| MvnI | CGCG | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NdeII | GATC | 3 cut(s) | 157, 406, 469 |
| NlaIII | CATG | 6 cut(s) | 317, 322, 326, 335, 371, 394 |
| NlaIV | GGNNCC | 3 cut(s) | 25, 238, 510 |
| NmeAIII | GCCGAG | 1 cut(s) | 66 |
| NmuCI | GTSAC | 1 cut(s) | 100 |
| NsiI | ATGCAT | 1 cut(s) | 324 |
| PfeI | GAWTC | 2 cut(s) | 46, 178 |
| PkrI | GCNGC | 1 cut(s) | 189 |
| PleI | GAGTC | 2 cut(s) | 150, 273 |
| PpsI | GAGTC | 2 cut(s) | 150, 273 |
| Ppu21I | YACGTR | 1 cut(s) | 230 |
| PsiI | TTATAA | 1 cut(s) | 516 |
| PspN4I | GGNNCC | 3 cut(s) | 25, 238, 510 |
| PspPI | GGNCC | 1 cut(s) | 24 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| SacII | CCGCGG | 1 cut(s) | 188 |
| SaqAI | TTAA | 2 cut(s) | 477, 537 |
| SatI | GCNGC | 1 cut(s) | 188 |
| Sau3AI | GATC | 3 cut(s) | 157, 406, 469 |
| Sau96I | GGNCC | 1 cut(s) | 24 |
| SchI | GAGTC | 2 cut(s) | 151, 274 |
| SetI | ASST | 4 cut(s) | 97, 203, 232, 312 |
| SfaNI | GCATC | 1 cut(s) | 4 |
| SfcI | CTRYAG | 2 cut(s) | 66, 96 |
| Sfr303I | CCGCGG | 1 cut(s) | 188 |
| SgrBI | CCGCGG | 1 cut(s) | 188 |
| SinI | GGWCC | 1 cut(s) | 24 |
| SnaBI | TACGTA | 1 cut(s) | 230 |
| Sse9I | AATT | 3 cut(s) | 191, 208, 426 |
| SsiI | CCGC | 3 cut(s) | 134, 185, 187 |
| SspMI | CTAG | 2 cut(s) | 105, 456 |
| StyI | CCWWGG | 1 cut(s) | 19 |
| TaaI | ACNGT | 1 cut(s) | 7 |
| TaiI | ACGT | 2 cut(s) | 232, 312 |
| TaqI | TCGA | 1 cut(s) | 405 |
| TasI | AATT | 3 cut(s) | 191, 208, 426 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TauI | GCSGC | 1 cut(s) | 190 |
| TfiI | GAWTC | 2 cut(s) | 46, 178 |
| Tru1I | TTAA | 2 cut(s) | 477, 537 |
| Tru9I | TTAA | 2 cut(s) | 477, 537 |
| TscAI | CASTG | 1 cut(s) | 356 |
| TseFI | GTSAC | 1 cut(s) | 100 |
| Tsp45I | GTSAC | 1 cut(s) | 100 |
| TspDTI | ATGAA | 2 cut(s) | 168, 302 |
| TspRI | CASTG | 1 cut(s) | 356 |
| VpaK11BI | GGWCC | 1 cut(s) | 24 |
| XspI | CTAG | 2 cut(s) | 105, 456 |
| Zsp2I | ATGCAT | 1 cut(s) | 324 |