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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 406 |
| AciI | CCGC | 1 cut(s) | 78 |
| AcsI | RAATTY | 1 cut(s) | 136 |
| AfaI | GTAC | 1 cut(s) | 444 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 43, 262, 375 |
| AgsI | TTSAA | 1 cut(s) | 17 |
| AjnI | CCWGG | 2 cut(s) | 42, 261 |
| AleI | CACNNNNGTG | 1 cut(s) | 80 |
| AluBI | AGCT | 2 cut(s) | 236, 395 |
| AluI | AGCT | 2 cut(s) | 236, 395 |
| Alw21I | GWGCWC | 2 cut(s) | 198, 253 |
| Alw44I | GTGCAC | 1 cut(s) | 194 |
| Ama87I | CYCGRG | 1 cut(s) | 185 |
| AoxI | GGCC | 1 cut(s) | 366 |
| ApaLI | GTGCAC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 1 cut(s) | 351 |
| ApoI | RAATTY | 1 cut(s) | 136 |
| AspLEI | GCGC | 1 cut(s) | 473 |
| AspS9I | GGNCC | 3 cut(s) | 46, 367, 507 |
| AsuC2I | CCSGG | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 3 cut(s) | 145, 318, 389 |
| AvaI | CYCGRG | 1 cut(s) | 185 |
| AvaII | GGWCC | 2 cut(s) | 46, 507 |
| BaeGI | GKGCMC | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 2 cut(s) | 198, 253 |
| BbvI | GCAGC | 1 cut(s) | 363 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 443, 477 |
| BciT130I | CCWGG | 2 cut(s) | 44, 263 |
| BcnI | CCSGG | 1 cut(s) | 318 |
| BfaI | CTAG | 1 cut(s) | 27 |
| BfmI | CTRYAG | 1 cut(s) | 280 |
| BfuAI | ACCTGC | 1 cut(s) | 406 |
| BisI | GCNGC | 1 cut(s) | 352 |
| BlsI | GCNGC | 1 cut(s) | 353 |
| Bme1390I | CCNGG | 3 cut(s) | 44, 263, 318 |
| Bme18I | GGWCC | 2 cut(s) | 46, 507 |
| BmeT110I | CYCGRG | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 3 cut(s) | 46, 367, 507 |
| BmiI | GGNNCC | 2 cut(s) | 369, 509 |
| BmrFI | CCNGG | 3 cut(s) | 44, 263, 318 |
| BmrI | ACTGGG | 1 cut(s) | 384 |
| BmsI | GCATC | 1 cut(s) | 153 |
| BmuI | ACTGGG | 1 cut(s) | 384 |
| BpuMI | CCSGG | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 1 cut(s) | 20 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 43, 262, 375 |
| Bse118I | RCCGGY | 2 cut(s) | 92, 347 |
| Bse1I | ACTGG | 1 cut(s) | 379 |
| BseBI | CCWGG | 2 cut(s) | 44, 263 |
| BseDI | CCNNGG | 1 cut(s) | 20 |
| BseGI | GGATG | 1 cut(s) | 313 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 43, 262, 375 |
| BseNI | ACTGG | 1 cut(s) | 379 |
| BseRI | GAGGAG | 2 cut(s) | 451, 463 |
| BseSI | GKGCMC | 1 cut(s) | 198 |
| BseXI | GCAGC | 1 cut(s) | 363 |
| BseYI | CCCAGC | 1 cut(s) | 71 |
| BsgI | GTGCAG | 1 cut(s) | 434 |
| BshFI | GGCC | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 2 cut(s) | 198, 253 |
| BsiHKCI | CYCGRG | 1 cut(s) | 185 |
| BsiSI | CCGG | 3 cut(s) | 93, 317, 348 |
| BslFI | GGGAC | 1 cut(s) | 493 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 43, 262, 375 |
| BsmFI | GGGAC | 1 cut(s) | 493 |
| BsnI | GGCC | 1 cut(s) | 368 |
| BsoBI | CYCGRG | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 2 cut(s) | 198, 253 |
| Bsp1407I | TGTACA | 1 cut(s) | 442 |
| Bsp143I | GATC | 1 cut(s) | 156 |
| BspACI | CCGC | 1 cut(s) | 78 |
| BspANI | GGCC | 1 cut(s) | 368 |
| BspLI | GGNNCC | 2 cut(s) | 369, 509 |
| BspMAI | CTGCAG | 1 cut(s) | 284 |
| BspMI | ACCTGC | 1 cut(s) | 406 |
| BsrFI | RCCGGY | 2 cut(s) | 92, 347 |
| BsrGI | TGTACA | 1 cut(s) | 442 |
| BsrI | ACTGG | 1 cut(s) | 379 |
| BssAI | RCCGGY | 2 cut(s) | 92, 347 |
| BssECI | CCNNGG | 1 cut(s) | 20 |
| BssMI | GATC | 1 cut(s) | 156 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst2UI | CCWGG | 2 cut(s) | 44, 263 |
| Bst4CI | ACNGT | 1 cut(s) | 410 |
| BstAUI | TGTACA | 1 cut(s) | 442 |
| BstC8I | GCNNGC | 2 cut(s) | 349, 381 |
| BstDEI | CTNAG | 1 cut(s) | 237 |
| BstEII | GGTNACC | 1 cut(s) | 324 |
| BstF5I | GGATG | 1 cut(s) | 313 |
| BstHHI | GCGC | 1 cut(s) | 473 |
| BstKTI | GATC | 1 cut(s) | 159 |
| BstMBI | GATC | 1 cut(s) | 156 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 86 |
| BstNI | CCWGG | 2 cut(s) | 44, 263 |
| BstNSI | RCATGY | 2 cut(s) | 383, 430 |
| BstPI | GGTNACC | 1 cut(s) | 324 |
| BstSCI | CCNGG | 3 cut(s) | 42, 261, 316 |
| BstSFI | CTRYAG | 1 cut(s) | 280 |
| BstSLI | GKGCMC | 1 cut(s) | 198 |
| BstV1I | GCAGC | 1 cut(s) | 363 |
| BsuRI | GGCC | 1 cut(s) | 368 |
| BtsCI | GGATG | 1 cut(s) | 313 |
| BtsIMutI | CAGTG | 1 cut(s) | 415 |
| BveI | ACCTGC | 1 cut(s) | 406 |
| Cac8I | GCNNGC | 2 cut(s) | 349, 381 |
| CfoI | GCGC | 1 cut(s) | 473 |
| Cfr10I | RCCGGY | 2 cut(s) | 92, 347 |
| Cfr13I | GGNCC | 3 cut(s) | 46, 367, 507 |
| Csp6I | GTAC | 1 cut(s) | 443 |
| CviAII | CATG | 5 cut(s) | 199, 355, 380, 427, 457 |
| CviQI | GTAC | 1 cut(s) | 443 |
| DdeI | CTNAG | 1 cut(s) | 237 |
| DpnI | GATC | 1 cut(s) | 158 |
| DpnII | GATC | 1 cut(s) | 156 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco47I | GGWCC | 2 cut(s) | 46, 507 |
| Eco88I | CYCGRG | 1 cut(s) | 185 |
| Eco91I | GGTNACC | 1 cut(s) | 324 |
| EcoO65I | GGTNACC | 1 cut(s) | 324 |
| EcoRI | GAATTC | 1 cut(s) | 136 |
| EcoRII | CCWGG | 2 cut(s) | 42, 261 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaeI | CATG | 5 cut(s) | 202, 358, 383, 430, 460 |
| FaiI | YATR | 6 cut(s) | 200, 258, 356, 381, 428, 458 |
| FaqI | GGGAC | 1 cut(s) | 493 |
| FatI | CATG | 5 cut(s) | 198, 354, 379, 426, 456 |
| Fnu4HI | GCNGC | 1 cut(s) | 352 |
| FokI | GGATG | 1 cut(s) | 320 |
| Fsp4HI | GCNGC | 1 cut(s) | 352 |
| FspBI | CTAG | 1 cut(s) | 27 |
| GlaI | GCGC | 1 cut(s) | 472 |
| GluI | GCNGC | 1 cut(s) | 352 |
| GsaI | CCCAGC | 1 cut(s) | 75 |
| HaeIII | GGCC | 1 cut(s) | 368 |
| HapII | CCGG | 3 cut(s) | 93, 317, 348 |
| HhaI | GCGC | 1 cut(s) | 473 |
| Hin1II | CATG | 5 cut(s) | 202, 358, 383, 430, 460 |
| Hin6I | GCGC | 1 cut(s) | 471 |
| HinP1I | GCGC | 1 cut(s) | 471 |
| HinfI | GANTC | 2 cut(s) | 5, 183 |
| HpaII | CCGG | 3 cut(s) | 93, 317, 348 |
| HphI | GGTGA | 3 cut(s) | 145, 318, 389 |
| Hpy166II | GTNNAC | 2 cut(s) | 196, 443 |
| Hpy188I | TCNGA | 5 cut(s) | 53, 163, 227, 245, 518 |
| Hpy188III | TCNNGA | 2 cut(s) | 27, 301 |
| Hpy8I | GTNNAC | 2 cut(s) | 196, 443 |
| Hpy99I | CGWCG | 1 cut(s) | 152 |
| HpyAV | CCTTC | 1 cut(s) | 298 |
| HpyCH4III | ACNGT | 1 cut(s) | 410 |
| HpyCH4IV | ACGT | 1 cut(s) | 486 |
| HpyCH4V | TGCA | 4 cut(s) | 144, 196, 282, 415 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 86 |
| HpyF3I | CTNAG | 1 cut(s) | 237 |
| HpySE526I | ACGT | 1 cut(s) | 486 |
| Hsp92II | CATG | 5 cut(s) | 202, 358, 383, 430, 460 |
| HspAI | GCGC | 1 cut(s) | 471 |
| KroI | GCCGGC | 1 cut(s) | 347 |
| KroNI | GCCGGC | 1 cut(s) | 349 |
| Kzo9I | GATC | 1 cut(s) | 156 |
| Lsp1109I | GCAGC | 1 cut(s) | 363 |
| LweI | GCATC | 1 cut(s) | 153 |
| MaeI | CTAG | 1 cut(s) | 27 |
| MaeII | ACGT | 1 cut(s) | 486 |
| MaeIII | GTNAC | 2 cut(s) | 269, 324 |
| MalI | GATC | 1 cut(s) | 158 |
| MboI | GATC | 1 cut(s) | 156 |
| MboII | GAAGA | 2 cut(s) | 187, 221 |
| MhlI | GDGCHC | 2 cut(s) | 198, 253 |
| MluCI | AATT | 4 cut(s) | 136, 152, 164, 203 |
| MlyI | GAGTC | 2 cut(s) | 14, 177 |
| MnlI | CCTC | 7 cut(s) | 59, 111, 378, 429, 441, 444, 491 |
| MroNI | GCCGGC | 1 cut(s) | 347 |
| MseI | TTAA | 3 cut(s) | 39, 117, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 80 |
| MspI | CCGG | 3 cut(s) | 93, 317, 348 |
| MspR9I | CCNGG | 3 cut(s) | 44, 263, 318 |
| MvaI | CCWGG | 2 cut(s) | 44, 263 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 86 |
| NaeI | GCCGGC | 1 cut(s) | 349 |
| NciI | CCSGG | 1 cut(s) | 318 |
| NdeII | GATC | 1 cut(s) | 156 |
| NgoMIV | GCCGGC | 1 cut(s) | 347 |
| NlaIII | CATG | 5 cut(s) | 202, 358, 383, 430, 460 |
| NlaIV | GGNNCC | 2 cut(s) | 369, 509 |
| NmeAIII | GCCGAG | 1 cut(s) | 442 |
| NmuCI | GTSAC | 2 cut(s) | 269, 324 |
| NspI | RCATGY | 2 cut(s) | 383, 430 |
| OliI | CACNNNNGTG | 1 cut(s) | 80 |
| PaeI | GCATGC | 1 cut(s) | 383 |
| PaeR7I | CTCGAG | 1 cut(s) | 185 |
| PdiI | GCCGGC | 1 cut(s) | 349 |
| PkrI | GCNGC | 1 cut(s) | 353 |
| PleI | GAGTC | 2 cut(s) | 13, 177 |
| PpsI | GAGTC | 2 cut(s) | 13, 177 |
| Psp6I | CCWGG | 2 cut(s) | 42, 261 |
| PspEI | GGTNACC | 1 cut(s) | 324 |
| PspFI | CCCAGC | 1 cut(s) | 71 |
| PspGI | CCWGG | 2 cut(s) | 42, 261 |
| PspN4I | GGNNCC | 2 cut(s) | 369, 509 |
| PspPI | GGNCC | 3 cut(s) | 46, 367, 507 |
| PspXI | VCTCGAGB | 1 cut(s) | 185 |
| PstI | CTGCAG | 1 cut(s) | 284 |
| RsaI | GTAC | 1 cut(s) | 444 |
| RsaNI | GTAC | 1 cut(s) | 443 |
| RseI | CAYNNNNRTG | 1 cut(s) | 80 |
| SaqAI | TTAA | 3 cut(s) | 39, 117, 492 |
| SatI | GCNGC | 1 cut(s) | 352 |
| Sau3AI | GATC | 1 cut(s) | 156 |
| Sau96I | GGNCC | 3 cut(s) | 46, 367, 507 |
| SchI | GAGTC | 2 cut(s) | 14, 177 |
| ScrFI | CCNGG | 3 cut(s) | 44, 263, 318 |
| SduI | GDGCHC | 2 cut(s) | 198, 253 |
| SfaNI | GCATC | 1 cut(s) | 153 |
| SfcI | CTRYAG | 1 cut(s) | 280 |
| Sfr274I | CTCGAG | 1 cut(s) | 185 |
| SinI | GGWCC | 2 cut(s) | 46, 507 |
| SlaI | CTCGAG | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 80 |
| SmlI | CTYRAG | 1 cut(s) | 185 |
| SmoI | CTYRAG | 1 cut(s) | 185 |
| SphI | GCATGC | 1 cut(s) | 383 |
| Sse9I | AATT | 4 cut(s) | 136, 152, 164, 203 |
| SsiI | CCGC | 1 cut(s) | 78 |
| SspMI | CTAG | 1 cut(s) | 27 |
| StyD4I | CCNGG | 3 cut(s) | 42, 261, 316 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaaI | ACNGT | 1 cut(s) | 410 |
| TaiI | ACGT | 1 cut(s) | 489 |
| TaqI | TCGA | 7 cut(s) | 58, 147, 186, 218, 302, 422, 434 |
| TaqII | GACCGA | 1 cut(s) | 312 |
| TasI | AATT | 4 cut(s) | 136, 152, 164, 203 |
| TatI | WGTACW | 1 cut(s) | 442 |
| Tru1I | TTAA | 3 cut(s) | 39, 117, 492 |
| Tru9I | TTAA | 3 cut(s) | 39, 117, 492 |
| TscAI | CASTG | 1 cut(s) | 415 |
| TseFI | GTSAC | 2 cut(s) | 269, 324 |
| TseI | GCWGC | 1 cut(s) | 351 |
| Tsp45I | GTSAC | 2 cut(s) | 269, 324 |
| TspDTI | ATGAA | 1 cut(s) | 215 |
| TspRI | CASTG | 1 cut(s) | 415 |
| VneI | GTGCAC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 2 cut(s) | 46, 507 |
| XapI | RAATTY | 1 cut(s) | 136 |
| XbaI | TCTAGA | 1 cut(s) | 26 |
| XceI | RCATGY | 2 cut(s) | 383, 430 |
| XhoI | CTCGAG | 1 cut(s) | 185 |
| XspI | CTAG | 1 cut(s) | 27 |