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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 585 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 968 |
| AciI | CCGC | 3 cut(s) | 783, 789, 840 |
| AclI | AACGTT | 1 cut(s) | 1210 |
| AclWI | GGATC | 2 cut(s) | 260, 887 |
| AcoI | YGGCCR | 1 cut(s) | 1046 |
| AcsI | RAATTY | 3 cut(s) | 23, 281, 521 |
| AcuI | CTGAAG | 2 cut(s) | 366, 612 |
| AfaI | GTAC | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 968 |
| AflIII | ACRYGT | 1 cut(s) | 871 |
| AgsI | TTSAA | 5 cut(s) | 93, 128, 358, 638, 1160 |
| AjiI | CACGTC | 1 cut(s) | 872 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 755, 787 |
| AluBI | AGCT | 6 cut(s) | 596, 634, 758, 863, 932, 982 |
| AluI | AGCT | 6 cut(s) | 596, 634, 758, 863, 932, 982 |
| Alw26I | GTCTC | 1 cut(s) | 1249 |
| AlwI | GGATC | 2 cut(s) | 260, 887 |
| AoxI | GGCC | 2 cut(s) | 722, 1046 |
| ApeKI | GCWGC | 3 cut(s) | 200, 835, 982 |
| ApoI | RAATTY | 3 cut(s) | 23, 281, 521 |
| AseI | ATTAAT | 2 cut(s) | 558, 1230 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 715 |
| AspLEI | GCGC | 1 cut(s) | 586 |
| AspS9I | GGNCC | 1 cut(s) | 1032 |
| AsuHPI | GGTGA | 2 cut(s) | 764, 983 |
| AvaII | GGWCC | 1 cut(s) | 1032 |
| BbsI | GAAGAC | 1 cut(s) | 645 |
| BbvI | GCAGC | 3 cut(s) | 212, 847, 969 |
| BccI | CCATC | 6 cut(s) | 269, 331, 788, 797, 1061, 1103 |
| BceAI | ACGGC | 1 cut(s) | 970 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BciVI | GTATCC | 1 cut(s) | 999 |
| BcoDI | GTCTC | 1 cut(s) | 1249 |
| BfaI | CTAG | 3 cut(s) | 215, 623, 720 |
| BfmI | CTRYAG | 2 cut(s) | 387, 1074 |
| BfuI | GTATCC | 1 cut(s) | 999 |
| BisI | GCNGC | 4 cut(s) | 201, 790, 836, 983 |
| BlsI | GCNGC | 4 cut(s) | 202, 791, 837, 984 |
| Bme1390I | CCNGG | 1 cut(s) | 450 |
| Bme18I | GGWCC | 1 cut(s) | 1032 |
| BmgBI | CACGTC | 1 cut(s) | 872 |
| BmgT120I | GGNCC | 1 cut(s) | 1032 |
| BmiI | GGNNCC | 2 cut(s) | 370, 1033 |
| BmrFI | CCNGG | 1 cut(s) | 450 |
| BmsI | GCATC | 2 cut(s) | 577, 1012 |
| BpiI | GAAGAC | 1 cut(s) | 645 |
| BpmI | CTGGAG | 1 cut(s) | 15 |
| BsaJI | CCNNGG | 4 cut(s) | 725, 913, 1027, 1049 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 596, 626 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 968 |
| Bse1I | ACTGG | 2 cut(s) | 100, 830 |
| Bse3DI | GCAATG | 2 cut(s) | 121, 392 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 4 cut(s) | 725, 913, 1027, 1049 |
| BseGI | GGATG | 1 cut(s) | 1006 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 968 |
| BseMI | GCAATG | 2 cut(s) | 121, 392 |
| BseNI | ACTGG | 2 cut(s) | 100, 830 |
| BseRI | GAGGAG | 1 cut(s) | 563 |
| BseXI | GCAGC | 3 cut(s) | 212, 847, 969 |
| BsgI | GTGCAG | 1 cut(s) | 854 |
| BshFI | GGCC | 2 cut(s) | 724, 1048 |
| BslFI | GGGAC | 2 cut(s) | 196, 1045 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 968 |
| BsmAI | GTCTC | 1 cut(s) | 1249 |
| BsmFI | GGGAC | 2 cut(s) | 196, 1045 |
| BsmI | GAATGC | 1 cut(s) | 1092 |
| BsnI | GGCC | 2 cut(s) | 724, 1048 |
| Bsp143I | GATC | 3 cut(s) | 13, 252, 892 |
| Bsp19I | CCATGG | 2 cut(s) | 725, 913 |
| BspACI | CCGC | 3 cut(s) | 783, 789, 840 |
| BspANI | GGCC | 2 cut(s) | 724, 1048 |
| BspLI | GGNNCC | 2 cut(s) | 370, 1033 |
| BspPI | GGATC | 2 cut(s) | 260, 887 |
| BspQI | GCTCTTC | 1 cut(s) | 819 |
| BsrDI | GCAATG | 2 cut(s) | 121, 392 |
| BsrI | ACTGG | 2 cut(s) | 100, 830 |
| BssECI | CCNNGG | 4 cut(s) | 725, 913, 1027, 1049 |
| BssMI | GATC | 3 cut(s) | 13, 252, 892 |
| BssT1I | CCWWGG | 3 cut(s) | 725, 913, 1027 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 2 cut(s) | 388, 1015 |
| Bst6I | CTCTTC | 2 cut(s) | 761, 819 |
| BstC8I | GCNNGC | 2 cut(s) | 588, 840 |
| BstDEI | CTNAG | 4 cut(s) | 19, 286, 597, 1197 |
| BstDSI | CCRYGG | 2 cut(s) | 725, 913 |
| BstF5I | GGATG | 1 cut(s) | 1006 |
| BstHHI | GCGC | 1 cut(s) | 586 |
| BstKTI | GATC | 3 cut(s) | 16, 255, 895 |
| BstMAI | GTCTC | 1 cut(s) | 1249 |
| BstMBI | GATC | 3 cut(s) | 13, 252, 892 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 789, 835, 1250 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstSCI | CCNGG | 1 cut(s) | 448 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 1074 |
| BstV1I | GCAGC | 3 cut(s) | 212, 847, 969 |
| BstV2I | GAAGAC | 1 cut(s) | 645 |
| BsuI | GTATCC | 1 cut(s) | 999 |
| BsuRI | GGCC | 2 cut(s) | 724, 1048 |
| BtgI | CCRYGG | 2 cut(s) | 725, 913 |
| BtgZI | GCGATG | 1 cut(s) | 807 |
| BtrI | CACGTC | 1 cut(s) | 872 |
| BtsCI | GGATG | 1 cut(s) | 1006 |
| BtsIMutI | CAGTG | 1 cut(s) | 837 |
| Cac8I | GCNNGC | 2 cut(s) | 588, 840 |
| CfoI | GCGC | 1 cut(s) | 586 |
| Cfr13I | GGNCC | 1 cut(s) | 1032 |
| Csp6I | GTAC | 1 cut(s) | 329 |
| CviAII | CATG | 6 cut(s) | 619, 726, 914, 1135, 1144, 1188 |
| CviQI | GTAC | 1 cut(s) | 329 |
| DdeI | CTNAG | 4 cut(s) | 19, 286, 597, 1197 |
| DpnI | GATC | 3 cut(s) | 15, 254, 894 |
| DpnII | GATC | 3 cut(s) | 13, 252, 892 |
| EaeI | YGGCCR | 1 cut(s) | 1046 |
| Eam1104I | CTCTTC | 2 cut(s) | 761, 819 |
| EarI | CTCTTC | 2 cut(s) | 761, 819 |
| Eco130I | CCWWGG | 3 cut(s) | 725, 913, 1027 |
| Eco32I | GATATC | 1 cut(s) | 176 |
| Eco47I | GGWCC | 1 cut(s) | 1032 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 612 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoRV | GATATC | 1 cut(s) | 176 |
| EcoT14I | CCWWGG | 3 cut(s) | 725, 913, 1027 |
| ErhI | CCWWGG | 3 cut(s) | 725, 913, 1027 |
| FaeI | CATG | 6 cut(s) | 622, 729, 917, 1138, 1147, 1191 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 618, 650, 1011, 1043 |
| FaqI | GGGAC | 2 cut(s) | 196, 1045 |
| FatI | CATG | 6 cut(s) | 618, 725, 913, 1134, 1143, 1187 |
| FauI | CCCGC | 1 cut(s) | 847 |
| Fnu4HI | GCNGC | 4 cut(s) | 201, 790, 836, 983 |
| FokI | GGATG | 1 cut(s) | 1013 |
| Fsp4HI | GCNGC | 4 cut(s) | 201, 790, 836, 983 |
| FspBI | CTAG | 3 cut(s) | 215, 623, 720 |
| FspI | TGCGCA | 1 cut(s) | 585 |
| GlaI | GCGC | 1 cut(s) | 585 |
| GluI | GCNGC | 4 cut(s) | 201, 790, 836, 983 |
| GsuI | CTGGAG | 1 cut(s) | 15 |
| HaeIII | GGCC | 2 cut(s) | 724, 1048 |
| HhaI | GCGC | 1 cut(s) | 586 |
| Hin1II | CATG | 6 cut(s) | 622, 729, 917, 1138, 1147, 1191 |
| Hin6I | GCGC | 1 cut(s) | 584 |
| HinP1I | GCGC | 1 cut(s) | 584 |
| HindIII | AAGCTT | 1 cut(s) | 632 |
| HinfI | GANTC | 3 cut(s) | 45, 659, 1054 |
| HphI | GGTGA | 2 cut(s) | 764, 983 |
| Hpy166II | GTNNAC | 1 cut(s) | 325 |
| Hpy188I | TCNGA | 3 cut(s) | 364, 502, 658 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 104, 572, 1097 |
| Hpy8I | GTNNAC | 1 cut(s) | 325 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyAV | CCTTC | 5 cut(s) | 341, 359, 480, 1141, 1154 |
| HpyCH4III | ACNGT | 2 cut(s) | 388, 1015 |
| HpyCH4IV | ACGT | 3 cut(s) | 327, 871, 1210 |
| HpyCH4V | TGCA | 4 cut(s) | 404, 835, 1124, 1181 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 789, 835, 1250 |
| HpyF3I | CTNAG | 4 cut(s) | 19, 286, 597, 1197 |
| HpySE526I | ACGT | 3 cut(s) | 327, 871, 1210 |
| Hsp92II | CATG | 6 cut(s) | 622, 729, 917, 1138, 1147, 1191 |
| HspAI | GCGC | 1 cut(s) | 584 |
| Kzo9I | GATC | 3 cut(s) | 13, 252, 892 |
| LguI | GCTCTTC | 1 cut(s) | 819 |
| LmnI | GCTCC | 3 cut(s) | 374, 604, 929 |
| Lsp1109I | GCAGC | 3 cut(s) | 212, 847, 969 |
| LweI | GCATC | 2 cut(s) | 577, 1012 |
| MaeI | CTAG | 3 cut(s) | 215, 623, 720 |
| MaeII | ACGT | 3 cut(s) | 327, 871, 1210 |
| MaeIII | GTNAC | 3 cut(s) | 673, 1139, 1211 |
| MalI | GATC | 3 cut(s) | 15, 254, 894 |
| MboI | GATC | 3 cut(s) | 13, 252, 892 |
| MluCI | AATT | 9 cut(s) | 23, 123, 281, 318, 454, 521, 555, 1155, 1227 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| MroXI | GAANNNNTTC | 1 cut(s) | 715 |
| MseI | TTAA | 7 cut(s) | 558, 647, 684, 738, 879, 1230, 1272 |
| MslI | CAYNNNNRTG | 2 cut(s) | 944, 1119 |
| MspR9I | CCNGG | 1 cut(s) | 450 |
| Mva1269I | GAATGC | 1 cut(s) | 1092 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 789, 835, 1250 |
| NcoI | CCATGG | 2 cut(s) | 725, 913 |
| NdeII | GATC | 3 cut(s) | 13, 252, 892 |
| NlaIII | CATG | 6 cut(s) | 622, 729, 917, 1138, 1147, 1191 |
| NlaIV | GGNNCC | 2 cut(s) | 370, 1033 |
| NmeAIII | GCCGAG | 1 cut(s) | 1074 |
| NsbI | TGCGCA | 1 cut(s) | 585 |
| PciSI | GCTCTTC | 1 cut(s) | 819 |
| PctI | GAATGC | 1 cut(s) | 1092 |
| PdmI | GAANNNNTTC | 1 cut(s) | 715 |
| PfeI | GAWTC | 3 cut(s) | 45, 659, 1054 |
| PflFI | GACNNNGTC | 1 cut(s) | 208 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 968 |
| PkrI | GCNGC | 4 cut(s) | 202, 791, 837, 984 |
| PshBI | ATTAAT | 2 cut(s) | 558, 1230 |
| Psp1406I | AACGTT | 1 cut(s) | 1210 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 2 cut(s) | 370, 1033 |
| PspPI | GGNCC | 1 cut(s) | 1032 |
| PsyI | GACNNNGTC | 1 cut(s) | 208 |
| RsaI | GTAC | 1 cut(s) | 330 |
| RsaNI | GTAC | 1 cut(s) | 329 |
| RseI | CAYNNNNRTG | 2 cut(s) | 944, 1119 |
| SapI | GCTCTTC | 1 cut(s) | 819 |
| SaqAI | TTAA | 7 cut(s) | 558, 647, 684, 738, 879, 1230, 1272 |
| SatI | GCNGC | 4 cut(s) | 201, 790, 836, 983 |
| Sau3AI | GATC | 3 cut(s) | 13, 252, 892 |
| Sau96I | GGNCC | 1 cut(s) | 1032 |
| ScrFI | CCNGG | 1 cut(s) | 450 |
| SfaNI | GCATC | 2 cut(s) | 577, 1012 |
| SfcI | CTRYAG | 2 cut(s) | 387, 1074 |
| SinI | GGWCC | 1 cut(s) | 1032 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 944, 1119 |
| Sse9I | AATT | 9 cut(s) | 23, 123, 281, 318, 454, 521, 555, 1155, 1227 |
| SsiI | CCGC | 3 cut(s) | 783, 789, 840 |
| SspMI | CTAG | 3 cut(s) | 215, 623, 720 |
| StyD4I | CCNGG | 1 cut(s) | 448 |
| StyI | CCWWGG | 3 cut(s) | 725, 913, 1027 |
| TaaI | ACNGT | 2 cut(s) | 388, 1015 |
| TaiI | ACGT | 3 cut(s) | 330, 874, 1213 |
| TaqI | TCGA | 3 cut(s) | 12, 225, 312 |
| TasI | AATT | 9 cut(s) | 23, 123, 281, 318, 454, 521, 555, 1155, 1227 |
| TauI | GCSGC | 1 cut(s) | 792 |
| TfiI | GAWTC | 3 cut(s) | 45, 659, 1054 |
| Tru1I | TTAA | 7 cut(s) | 558, 647, 684, 738, 879, 1230, 1272 |
| Tru9I | TTAA | 7 cut(s) | 558, 647, 684, 738, 879, 1230, 1272 |
| TscAI | CASTG | 1 cut(s) | 837 |
| TseI | GCWGC | 3 cut(s) | 200, 835, 982 |
| TspDTI | ATGAA | 6 cut(s) | 17, 37, 132, 911, 1160, 1248 |
| TspRI | CASTG | 1 cut(s) | 837 |
| Tth111I | GACNNNGTC | 1 cut(s) | 208 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 968 |
| VpaK11BI | GGWCC | 1 cut(s) | 1032 |
| VspI | ATTAAT | 2 cut(s) | 558, 1230 |
| XapI | RAATTY | 3 cut(s) | 23, 281, 521 |
| XmnI | GAANNNNTTC | 1 cut(s) | 715 |
| XspI | CTAG | 3 cut(s) | 215, 623, 720 |