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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1159 |
| AatII | GACGTC | 1 cut(s) | 492 |
| Acc36I | ACCTGC | 1 cut(s) | 831 |
| Acc65I | GGTACC | 1 cut(s) | 754 |
| AccB1I | GGYRCC | 1 cut(s) | 754 |
| AccI | GTMKAC | 1 cut(s) | 78 |
| AciI | CCGC | 4 cut(s) | 173, 356, 546, 629 |
| AclWI | GGATC | 1 cut(s) | 186 |
| AcoI | YGGCCR | 1 cut(s) | 483 |
| AcuI | CTGAAG | 2 cut(s) | 201, 946 |
| AcyI | GRCGYC | 1 cut(s) | 489 |
| AfaI | GTAC | 4 cut(s) | 5, 600, 756, 1171 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 169, 239, 805, 1243 |
| AflIII | ACRYGT | 1 cut(s) | 342 |
| AgsI | TTSAA | 5 cut(s) | 215, 526, 866, 896, 952 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 343, 372 |
| Alw21I | GWGCWC | 3 cut(s) | 108, 125, 393 |
| Alw26I | GTCTC | 5 cut(s) | 351, 357, 380, 452, 718 |
| AlwI | GGATC | 1 cut(s) | 186 |
| Ama87I | CYCGRG | 2 cut(s) | 101, 118 |
| AoxI | GGCC | 3 cut(s) | 241, 483, 609 |
| ApeKI | GCWGC | 3 cut(s) | 302, 785, 826 |
| Asp718I | GGTACC | 1 cut(s) | 754 |
| AspLEI | GCGC | 2 cut(s) | 187, 317 |
| AsuC2I | CCSGG | 1 cut(s) | 240 |
| AsuHPI | GGTGA | 3 cut(s) | 132, 487, 1235 |
| AsuII | TTCGAA | 1 cut(s) | 968 |
| AvaI | CYCGRG | 2 cut(s) | 101, 118 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1161, 1194 |
| BanI | GGYRCC | 1 cut(s) | 754 |
| BanII | GRGCYC | 4 cut(s) | 108, 125, 278, 393 |
| BauI | CACGAG | 1 cut(s) | 534 |
| Bbv12I | GWGCWC | 3 cut(s) | 108, 125, 393 |
| BbvI | GCAGC | 3 cut(s) | 289, 797, 838 |
| BccI | CCATC | 2 cut(s) | 151, 785 |
| BceAI | ACGGC | 2 cut(s) | 302, 343 |
| BciVI | GTATCC | 1 cut(s) | 1042 |
| BcnI | CCSGG | 1 cut(s) | 240 |
| BcoDI | GTCTC | 5 cut(s) | 351, 357, 380, 452, 718 |
| BfaI | CTAG | 4 cut(s) | 12, 429, 741, 1071 |
| BfmI | CTRYAG | 1 cut(s) | 824 |
| BfoI | RGCGCY | 1 cut(s) | 188 |
| BfuAI | ACCTGC | 1 cut(s) | 831 |
| BfuI | GTATCC | 1 cut(s) | 1042 |
| BisI | GCNGC | 4 cut(s) | 303, 546, 786, 827 |
| BlsI | GCNGC | 4 cut(s) | 304, 547, 787, 828 |
| Bme1390I | CCNGG | 1 cut(s) | 240 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 343, 372 |
| BmeT110I | CYCGRG | 2 cut(s) | 101, 118 |
| BmiI | GGNNCC | 3 cut(s) | 275, 756, 810 |
| BmrFI | CCNGG | 1 cut(s) | 240 |
| BmrI | ACTGGG | 1 cut(s) | 807 |
| BmsI | GCATC | 1 cut(s) | 532 |
| BmuI | ACTGGG | 1 cut(s) | 807 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 866, 898 |
| BpmI | CTGGAG | 1 cut(s) | 377 |
| Bpu14I | TTCGAA | 1 cut(s) | 968 |
| BpuEI | CTTGAG | 1 cut(s) | 1072 |
| BpuMI | CCSGG | 1 cut(s) | 240 |
| BsaAI | YACGTR | 1 cut(s) | 343 |
| BsaHI | GRCGYC | 1 cut(s) | 489 |
| BsaI | GGTCTC | 1 cut(s) | 718 |
| BsaJI | CCNNGG | 1 cut(s) | 238 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 90, 107, 120, 137 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 169, 239, 805, 1243 |
| Bse1I | ACTGG | 2 cut(s) | 813, 1171 |
| BseDI | CCNNGG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 169, 239, 805, 1243 |
| BseMII | CTCAG | 4 cut(s) | 242, 391, 572, 864 |
| BseNI | ACTGG | 2 cut(s) | 813, 1171 |
| BseRI | GAGGAG | 7 cut(s) | 98, 115, 127, 149, 427, 430, 1208 |
| BseXI | GCAGC | 3 cut(s) | 289, 797, 838 |
| BseYI | CCCAGC | 1 cut(s) | 298 |
| BsgI | GTGCAG | 2 cut(s) | 288, 538 |
| BshFI | GGCC | 3 cut(s) | 243, 485, 611 |
| BshNI | GGYRCC | 1 cut(s) | 754 |
| BsiHKAI | GWGCWC | 3 cut(s) | 108, 125, 393 |
| BsiHKCI | CYCGRG | 2 cut(s) | 101, 118 |
| BsiSI | CCGG | 1 cut(s) | 240 |
| BslFI | GGGAC | 3 cut(s) | 492, 730, 1048 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 169, 239, 805, 1243 |
| BsmAI | GTCTC | 5 cut(s) | 351, 357, 380, 452, 718 |
| BsmBI | CGTCTC | 2 cut(s) | 357, 380 |
| BsmFI | GGGAC | 3 cut(s) | 492, 730, 1048 |
| BsmI | GAATGC | 1 cut(s) | 478 |
| BsnI | GGCC | 3 cut(s) | 243, 485, 611 |
| Bso31I | GGTCTC | 1 cut(s) | 718 |
| BsoBI | CYCGRG | 2 cut(s) | 101, 118 |
| Bsp119I | TTCGAA | 1 cut(s) | 968 |
| Bsp1286I | GDGCHC | 4 cut(s) | 108, 125, 278, 393 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| BspACI | CCGC | 4 cut(s) | 173, 356, 546, 629 |
| BspANI | GGCC | 3 cut(s) | 243, 485, 611 |
| BspCNI | CTCAG | 4 cut(s) | 243, 390, 571, 865 |
| BspLI | GGNNCC | 3 cut(s) | 275, 756, 810 |
| BspMAI | CTGCAG | 1 cut(s) | 828 |
| BspMI | ACCTGC | 1 cut(s) | 831 |
| BspPI | GGATC | 1 cut(s) | 186 |
| BspT104I | TTCGAA | 1 cut(s) | 968 |
| BspT107I | GGYRCC | 1 cut(s) | 754 |
| BspTNI | GGTCTC | 1 cut(s) | 718 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BsrI | ACTGG | 2 cut(s) | 813, 1171 |
| BssECI | CCNNGG | 1 cut(s) | 238 |
| BssMI | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| BssNI | GRCGYC | 1 cut(s) | 489 |
| BssSI | CACGAG | 1 cut(s) | 534 |
| Bst2BI | CACGAG | 1 cut(s) | 534 |
| Bst6I | CTCTTC | 1 cut(s) | 133 |
| BstACI | GRCGYC | 1 cut(s) | 489 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 944 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstBAI | YACGTR | 1 cut(s) | 343 |
| BstBI | TTCGAA | 1 cut(s) | 968 |
| BstC8I | GCNNGC | 4 cut(s) | 457, 587, 653, 945 |
| BstDEI | CTNAG | 6 cut(s) | 251, 377, 558, 873, 976, 1136 |
| BstH2I | RGCGCY | 1 cut(s) | 188 |
| BstHHI | GCGC | 2 cut(s) | 187, 317 |
| BstKTI | GATC | 6 cut(s) | 194, 206, 250, 265, 480, 772 |
| BstMAI | GTCTC | 5 cut(s) | 351, 357, 380, 452, 718 |
| BstMBI | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 482, 944 |
| BstNSI | RCATGY | 2 cut(s) | 938, 947 |
| BstSCI | CCNGG | 1 cut(s) | 238 |
| BstSFI | CTRYAG | 1 cut(s) | 824 |
| BstV1I | GCAGC | 3 cut(s) | 289, 797, 838 |
| BstX2I | RGATCY | 1 cut(s) | 191 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 517 |
| BstYI | RGATCY | 1 cut(s) | 191 |
| BsuI | GTATCC | 1 cut(s) | 1042 |
| BsuRI | GGCC | 3 cut(s) | 243, 485, 611 |
| BtsIMutI | CAGTG | 2 cut(s) | 870, 1164 |
| BveI | ACCTGC | 1 cut(s) | 831 |
| Cac8I | GCNNGC | 4 cut(s) | 457, 587, 653, 945 |
| CfoI | GCGC | 2 cut(s) | 187, 317 |
| Csp6I | GTAC | 4 cut(s) | 4, 599, 755, 1170 |
| CviAII | CATG | 6 cut(s) | 460, 481, 664, 935, 944, 1159 |
| CviQI | GTAC | 4 cut(s) | 4, 599, 755, 1170 |
| DdeI | CTNAG | 6 cut(s) | 251, 377, 558, 873, 976, 1136 |
| DpnI | GATC | 6 cut(s) | 193, 205, 249, 264, 479, 771 |
| DpnII | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| DraI | TTTAAA | 2 cut(s) | 43, 606 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1159 |
| DriI | GACNNNNNGTC | 2 cut(s) | 343, 372 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1159 |
| EaeI | YGGCCR | 1 cut(s) | 483 |
| Eam1104I | CTCTTC | 1 cut(s) | 133 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 343, 372 |
| EarI | CTCTTC | 1 cut(s) | 133 |
| EciI | GGCGGA | 2 cut(s) | 188, 345 |
| Ecl136II | GAGCTC | 3 cut(s) | 106, 123, 391 |
| Eco24I | GRGCYC | 4 cut(s) | 108, 125, 278, 393 |
| Eco31I | GGTCTC | 1 cut(s) | 718 |
| Eco53kI | GAGCTC | 3 cut(s) | 106, 123, 391 |
| Eco57I | CTGAAG | 2 cut(s) | 201, 946 |
| Eco88I | CYCGRG | 2 cut(s) | 101, 118 |
| EcoICRI | GAGCTC | 3 cut(s) | 106, 123, 391 |
| EcoT38I | GRGCYC | 4 cut(s) | 108, 125, 278, 393 |
| Esp3I | CGTCTC | 2 cut(s) | 357, 380 |
| FaeI | CATG | 6 cut(s) | 463, 484, 667, 938, 947, 1162 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 932, 964 |
| FaqI | GGGAC | 3 cut(s) | 492, 730, 1048 |
| FatI | CATG | 6 cut(s) | 459, 480, 663, 934, 943, 1158 |
| FauI | CCCGC | 1 cut(s) | 622 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 4 cut(s) | 303, 546, 786, 827 |
| FriOI | GRGCYC | 4 cut(s) | 108, 125, 278, 393 |
| Fsp4HI | GCNGC | 4 cut(s) | 303, 546, 786, 827 |
| FspBI | CTAG | 4 cut(s) | 12, 429, 741, 1071 |
| GlaI | GCGC | 2 cut(s) | 186, 316 |
| GluI | GCNGC | 4 cut(s) | 303, 546, 786, 827 |
| GsaI | CCCAGC | 1 cut(s) | 302 |
| GsuI | CTGGAG | 1 cut(s) | 377 |
| HaeII | RGCGCY | 1 cut(s) | 188 |
| HaeIII | GGCC | 3 cut(s) | 243, 485, 611 |
| HapII | CCGG | 1 cut(s) | 240 |
| HhaI | GCGC | 2 cut(s) | 187, 317 |
| Hin1I | GRCGYC | 1 cut(s) | 489 |
| Hin1II | CATG | 6 cut(s) | 463, 484, 667, 938, 947, 1162 |
| Hin6I | GCGC | 2 cut(s) | 185, 315 |
| HinP1I | GCGC | 2 cut(s) | 185, 315 |
| HincII | GTYRAC | 1 cut(s) | 79 |
| HindII | GTYRAC | 1 cut(s) | 79 |
| HindIII | AAGCTT | 1 cut(s) | 527 |
| HinfI | GANTC | 7 cut(s) | 99, 176, 229, 326, 367, 795, 922 |
| HpaII | CCGG | 1 cut(s) | 240 |
| HphI | GGTGA | 3 cut(s) | 132, 487, 1235 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 79, 1164 |
| Hpy188I | TCNGA | 9 cut(s) | 53, 181, 228, 252, 325, 366, 388, 690, 927 |
| Hpy188III | TCNNGA | 7 cut(s) | 195, 233, 394, 536, 560, 638, 1089 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 79, 1164 |
| Hpy99I | CGWCG | 2 cut(s) | 491, 494 |
| HpyAV | CCTTC | 3 cut(s) | 641, 768, 1235 |
| HpyCH4IV | ACGT | 2 cut(s) | 342, 489 |
| HpyCH4V | TGCA | 7 cut(s) | 305, 555, 589, 663, 826, 938, 1120 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 482, 944 |
| HpyF3I | CTNAG | 6 cut(s) | 251, 377, 558, 873, 976, 1136 |
| HpySE526I | ACGT | 2 cut(s) | 342, 489 |
| Hsp92I | GRCGYC | 1 cut(s) | 489 |
| Hsp92II | CATG | 6 cut(s) | 463, 484, 667, 938, 947, 1162 |
| HspAI | GCGC | 2 cut(s) | 185, 315 |
| KpnI | GGTACC | 1 cut(s) | 758 |
| Kzo9I | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| LmnI | GCTCC | 7 cut(s) | 111, 128, 140, 273, 396, 401, 582 |
| Lsp1109I | GCAGC | 3 cut(s) | 289, 797, 838 |
| LweI | GCATC | 1 cut(s) | 532 |
| MaeI | CTAG | 4 cut(s) | 12, 429, 741, 1071 |
| MaeII | ACGT | 2 cut(s) | 342, 489 |
| MaeIII | GTNAC | 4 cut(s) | 217, 335, 493, 818 |
| MalI | GATC | 6 cut(s) | 193, 205, 249, 264, 479, 771 |
| MboI | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| MboII | GAAGA | 4 cut(s) | 120, 551, 679, 1104 |
| MflI | RGATCY | 1 cut(s) | 191 |
| MhlI | GDGCHC | 4 cut(s) | 108, 125, 278, 393 |
| MluCI | AATT | 3 cut(s) | 210, 1075, 1226 |
| MlyI | GAGTC | 4 cut(s) | 93, 320, 361, 931 |
| MmeI | TCCRAC | 3 cut(s) | 251, 905, 1026 |
| MseI | TTAA | 5 cut(s) | 42, 570, 605, 957, 1179 |
| MspA1I | CMGCKG | 2 cut(s) | 302, 788 |
| MspI | CCGG | 1 cut(s) | 240 |
| MspR9I | CCNGG | 1 cut(s) | 240 |
| Mva1269I | GAATGC | 1 cut(s) | 478 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 482, 944 |
| NciI | CCSGG | 1 cut(s) | 240 |
| NdeII | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| NlaIII | CATG | 6 cut(s) | 463, 484, 667, 938, 947, 1162 |
| NlaIV | GGNNCC | 3 cut(s) | 275, 756, 810 |
| NmeAIII | GCCGAG | 1 cut(s) | 213 |
| NmuCI | GTSAC | 3 cut(s) | 335, 493, 818 |
| NspI | RCATGY | 2 cut(s) | 938, 947 |
| NspV | TTCGAA | 1 cut(s) | 968 |
| PaeI | GCATGC | 1 cut(s) | 947 |
| PaeR7I | CTCGAG | 2 cut(s) | 101, 118 |
| PctI | GAATGC | 1 cut(s) | 478 |
| PfeI | GAWTC | 3 cut(s) | 176, 229, 795 |
| PflFI | GACNNNGTC | 2 cut(s) | 491, 678 |
| PkrI | GCNGC | 4 cut(s) | 304, 547, 787, 828 |
| PleI | GAGTC | 4 cut(s) | 93, 320, 361, 930 |
| PpsI | GAGTC | 4 cut(s) | 93, 320, 361, 930 |
| Ppu21I | YACGTR | 1 cut(s) | 343 |
| Psp124BI | GAGCTC | 3 cut(s) | 108, 125, 393 |
| PspFI | CCCAGC | 1 cut(s) | 298 |
| PspN4I | GGNNCC | 3 cut(s) | 275, 756, 810 |
| PspXI | VCTCGAGB | 2 cut(s) | 101, 118 |
| PstI | CTGCAG | 1 cut(s) | 828 |
| PsuI | RGATCY | 1 cut(s) | 191 |
| PsyI | GACNNNGTC | 2 cut(s) | 491, 678 |
| PvuII | CAGCTG | 2 cut(s) | 302, 788 |
| RsaI | GTAC | 4 cut(s) | 5, 600, 756, 1171 |
| RsaNI | GTAC | 4 cut(s) | 4, 599, 755, 1170 |
| SacI | GAGCTC | 3 cut(s) | 108, 125, 393 |
| SalI | GTCGAC | 1 cut(s) | 77 |
| SaqAI | TTAA | 5 cut(s) | 42, 570, 605, 957, 1179 |
| SatI | GCNGC | 4 cut(s) | 303, 546, 786, 827 |
| Sau3AI | GATC | 6 cut(s) | 191, 203, 247, 262, 477, 769 |
| SchI | GAGTC | 4 cut(s) | 93, 320, 361, 931 |
| ScrFI | CCNGG | 1 cut(s) | 240 |
| SduI | GDGCHC | 4 cut(s) | 108, 125, 278, 393 |
| SfaNI | GCATC | 1 cut(s) | 532 |
| SfcI | CTRYAG | 1 cut(s) | 824 |
| Sfr274I | CTCGAG | 2 cut(s) | 101, 118 |
| SfuI | TTCGAA | 1 cut(s) | 968 |
| SlaI | CTCGAG | 2 cut(s) | 101, 118 |
| SmiI | ATTTAAAT | 1 cut(s) | 43 |
| SmlI | CTYRAG | 3 cut(s) | 101, 118, 1087 |
| SmoI | CTYRAG | 3 cut(s) | 101, 118, 1087 |
| SphI | GCATGC | 1 cut(s) | 947 |
| Sse9I | AATT | 3 cut(s) | 210, 1075, 1226 |
| SsiI | CCGC | 4 cut(s) | 173, 356, 546, 629 |
| SspI | AATATT | 1 cut(s) | 659 |
| SspMI | CTAG | 4 cut(s) | 12, 429, 741, 1071 |
| SstI | GAGCTC | 3 cut(s) | 108, 125, 393 |
| StyD4I | CCNGG | 1 cut(s) | 238 |
| SwaI | ATTTAAAT | 1 cut(s) | 43 |
| TaiI | ACGT | 2 cut(s) | 345, 492 |
| TaqI | TCGA | 8 cut(s) | 78, 102, 119, 202, 246, 682, 968, 1191 |
| TaqII | GACCGA | 1 cut(s) | 37 |
| TasI | AATT | 3 cut(s) | 210, 1075, 1226 |
| TatI | WGTACW | 2 cut(s) | 3, 598 |
| TauI | GCSGC | 1 cut(s) | 548 |
| TfiI | GAWTC | 3 cut(s) | 176, 229, 795 |
| Tru1I | TTAA | 5 cut(s) | 42, 570, 605, 957, 1179 |
| Tru9I | TTAA | 5 cut(s) | 42, 570, 605, 957, 1179 |
| TscAI | CASTG | 2 cut(s) | 877, 1171 |
| TseFI | GTSAC | 3 cut(s) | 335, 493, 818 |
| TseI | GCWGC | 3 cut(s) | 302, 785, 826 |
| Tsp45I | GTSAC | 3 cut(s) | 335, 493, 818 |
| TspDTI | ATGAA | 3 cut(s) | 13, 660, 680 |
| TspGWI | ACGGA | 3 cut(s) | 323, 339, 362 |
| TspRI | CASTG | 2 cut(s) | 877, 1171 |
| Tth111I | GACNNNGTC | 2 cut(s) | 491, 678 |
| XceI | RCATGY | 2 cut(s) | 938, 947 |
| XhoI | CTCGAG | 2 cut(s) | 101, 118 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XspI | CTAG | 4 cut(s) | 12, 429, 741, 1071 |
| ZraI | GACGTC | 1 cut(s) | 490 |