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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccI | GTMKAC | 1 cut(s) | 450 |
| AccIII | TCCGGA | 1 cut(s) | 702 |
| AciI | CCGC | 1 cut(s) | 582 |
| AclWI | GGATC | 5 cut(s) | 386, 419, 432, 617, 630 |
| AcuI | CTGAAG | 2 cut(s) | 153, 305 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 61, 434, 632 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AjnI | CCWGG | 3 cut(s) | 364, 433, 663 |
| AluBI | AGCT | 4 cut(s) | 173, 246, 314, 671 |
| AluI | AGCT | 4 cut(s) | 173, 246, 314, 671 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| Alw26I | GTCTC | 1 cut(s) | 401 |
| AlwI | GGATC | 5 cut(s) | 386, 419, 432, 617, 630 |
| Aor13HI | TCCGGA | 1 cut(s) | 702 |
| AoxI | GGCC | 2 cut(s) | 367, 508 |
| ApeKI | GCWGC | 2 cut(s) | 234, 311 |
| AspLEI | GCGC | 2 cut(s) | 10, 600 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 347 |
| AxyI | CCTNAGG | 1 cut(s) | 60 |
| BamHI | GGATCC | 2 cut(s) | 424, 622 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BbsI | GAAGAC | 1 cut(s) | 332 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BbvI | GCAGC | 2 cut(s) | 246, 323 |
| BccI | CCATC | 1 cut(s) | 19 |
| BceAI | ACGGC | 1 cut(s) | 354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 37, 71 |
| BciT130I | CCWGG | 3 cut(s) | 366, 435, 665 |
| BcoDI | GTCTC | 1 cut(s) | 401 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BisI | GCNGC | 2 cut(s) | 235, 312 |
| BlsI | GCNGC | 2 cut(s) | 236, 313 |
| Bme1390I | CCNGG | 3 cut(s) | 366, 435, 665 |
| BmiI | GGNNCC | 3 cut(s) | 9, 426, 624 |
| BmrFI | CCNGG | 3 cut(s) | 366, 435, 665 |
| BmsI | GCATC | 2 cut(s) | 342, 585 |
| BpiI | GAAGAC | 1 cut(s) | 332 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaI | GGTCTC | 1 cut(s) | 401 |
| BsaJI | CCNNGG | 2 cut(s) | 630, 654 |
| BsaWI | WCCGGW | 1 cut(s) | 702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 162, 192 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 61, 434, 632 |
| Bse1I | ACTGG | 1 cut(s) | 309 |
| Bse21I | CCTNAGG | 1 cut(s) | 60 |
| Bse3DI | GCAATG | 1 cut(s) | 577 |
| BseAI | TCCGGA | 1 cut(s) | 702 |
| BseBI | CCWGG | 3 cut(s) | 366, 435, 665 |
| BseDI | CCNNGG | 2 cut(s) | 630, 654 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 61, 434, 632 |
| BseMI | GCAATG | 1 cut(s) | 577 |
| BseMII | CTCAG | 2 cut(s) | 51, 561 |
| BseNI | ACTGG | 1 cut(s) | 309 |
| BseXI | GCAGC | 2 cut(s) | 246, 323 |
| BseYI | CCCAGC | 1 cut(s) | 566 |
| BsgI | GTGCAG | 1 cut(s) | 253 |
| BshFI | GGCC | 2 cut(s) | 369, 510 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsiSI | CCGG | 1 cut(s) | 703 |
| BslFI | GGGAC | 1 cut(s) | 623 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 61, 434, 632 |
| BsmAI | GTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 1 cut(s) | 623 |
| BsmI | GAATGC | 1 cut(s) | 584 |
| BsnI | GGCC | 2 cut(s) | 369, 510 |
| Bso31I | GGTCTC | 1 cut(s) | 401 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp13I | TCCGGA | 1 cut(s) | 702 |
| Bsp143I | GATC | 4 cut(s) | 296, 378, 424, 622 |
| BspACI | CCGC | 1 cut(s) | 582 |
| BspANI | GGCC | 2 cut(s) | 369, 510 |
| BspCNI | CTCAG | 2 cut(s) | 52, 560 |
| BspEI | TCCGGA | 1 cut(s) | 702 |
| BspHI | TCATGA | 2 cut(s) | 348, 603 |
| BspLI | GGNNCC | 3 cut(s) | 9, 426, 624 |
| BspPI | GGATC | 5 cut(s) | 386, 419, 432, 617, 630 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BspTNI | GGTCTC | 1 cut(s) | 401 |
| BsrDI | GCAATG | 1 cut(s) | 577 |
| BsrI | ACTGG | 1 cut(s) | 309 |
| BssECI | CCNNGG | 2 cut(s) | 630, 654 |
| BssMI | GATC | 4 cut(s) | 296, 378, 424, 622 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 2 cut(s) | 630, 654 |
| Bst2UI | CCWGG | 3 cut(s) | 366, 435, 665 |
| Bst4CI | ACNGT | 5 cut(s) | 178, 265, 335, 412, 479 |
| Bst6I | CTCTTC | 1 cut(s) | 450 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 1 cut(s) | 154 |
| BstDEI | CTNAG | 2 cut(s) | 60, 547 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 59, 432 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 2 cut(s) | 10, 600 |
| BstKTI | GATC | 4 cut(s) | 299, 381, 427, 625 |
| BstMAI | GTCTC | 1 cut(s) | 401 |
| BstMBI | GATC | 4 cut(s) | 296, 378, 424, 622 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 243 |
| BstNI | CCWGG | 3 cut(s) | 366, 435, 665 |
| BstSCI | CCNGG | 3 cut(s) | 364, 433, 663 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstV1I | GCAGC | 2 cut(s) | 246, 323 |
| BstV2I | GAAGAC | 1 cut(s) | 332 |
| BstX2I | RGATCY | 3 cut(s) | 378, 424, 622 |
| BstYI | RGATCY | 3 cut(s) | 378, 424, 622 |
| Bsu36I | CCTNAGG | 1 cut(s) | 60 |
| BsuRI | GGCC | 2 cut(s) | 369, 510 |
| BtsIMutI | CAGTG | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 1 cut(s) | 154 |
| CciI | TCATGA | 2 cut(s) | 348, 603 |
| CfoI | GCGC | 2 cut(s) | 10, 600 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviAII | CATG | 5 cut(s) | 157, 238, 349, 604, 619 |
| CviJI | RGCY | 9 cut(s) | 173, 185, 224, 246, 314, 369, 510, 671, 689 |
| CviKI_1 | RGCY | 9 cut(s) | 173, 185, 224, 246, 314, 369, 510, 671, 689 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 2 cut(s) | 60, 547 |
| DinI | GGCGCC | 1 cut(s) | 9 |
| DpnI | GATC | 4 cut(s) | 298, 380, 426, 624 |
| DpnII | GATC | 4 cut(s) | 296, 378, 424, 622 |
| DraI | TTTAAA | 2 cut(s) | 21, 486 |
| Eam1104I | CTCTTC | 1 cut(s) | 450 |
| EarI | CTCTTC | 1 cut(s) | 450 |
| Eco130I | CCWWGG | 2 cut(s) | 630, 654 |
| Eco31I | GGTCTC | 1 cut(s) | 401 |
| Eco57I | CTGAAG | 2 cut(s) | 153, 305 |
| Eco81I | CCTNAGG | 1 cut(s) | 60 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 59, 432 |
| EcoRII | CCWGG | 3 cut(s) | 364, 433, 663 |
| EcoT14I | CCWWGG | 2 cut(s) | 630, 654 |
| EgeI | GGCGCC | 1 cut(s) | 9 |
| EheI | GGCGCC | 1 cut(s) | 9 |
| ErhI | CCWWGG | 2 cut(s) | 630, 654 |
| FaeI | CATG | 5 cut(s) | 160, 241, 352, 607, 622 |
| FaqI | GGGAC | 1 cut(s) | 623 |
| FatI | CATG | 5 cut(s) | 156, 237, 348, 603, 618 |
| FauI | CCCGC | 1 cut(s) | 575 |
| FblI | GTMKAC | 1 cut(s) | 450 |
| Fnu4HI | GCNGC | 2 cut(s) | 235, 312 |
| Fsp4HI | GCNGC | 2 cut(s) | 235, 312 |
| GlaI | GCGC | 2 cut(s) | 9, 599 |
| GluI | GCNGC | 2 cut(s) | 235, 312 |
| GsaI | CCCAGC | 1 cut(s) | 570 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HaeIII | GGCC | 2 cut(s) | 369, 510 |
| HapII | CCGG | 1 cut(s) | 703 |
| HhaI | GCGC | 2 cut(s) | 10, 600 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 5 cut(s) | 160, 241, 352, 607, 622 |
| Hin6I | GCGC | 2 cut(s) | 8, 598 |
| HinP1I | GCGC | 2 cut(s) | 8, 598 |
| HincII | GTYRAC | 1 cut(s) | 451 |
| HindII | GTYRAC | 1 cut(s) | 451 |
| HindIII | AAGCTT | 1 cut(s) | 669 |
| HpaII | CCGG | 1 cut(s) | 703 |
| HphI | GGTGA | 2 cut(s) | 119, 347 |
| Hpy166II | GTNNAC | 3 cut(s) | 338, 451, 475 |
| Hpy188I | TCNGA | 1 cut(s) | 324 |
| Hpy188III | TCNNGA | 6 cut(s) | 300, 349, 422, 472, 604, 703 |
| Hpy8I | GTNNAC | 3 cut(s) | 338, 451, 475 |
| Hpy99I | CGWCG | 1 cut(s) | 455 |
| HpyAV | CCTTC | 3 cut(s) | 130, 397, 636 |
| HpyCH4III | ACNGT | 5 cut(s) | 178, 265, 335, 412, 479 |
| HpyCH4IV | ACGT | 1 cut(s) | 520 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 234 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 243 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 547 |
| HpySE526I | ACGT | 1 cut(s) | 520 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 5 cut(s) | 160, 241, 352, 607, 622 |
| HspAI | GCGC | 2 cut(s) | 8, 598 |
| KasI | GGCGCC | 1 cut(s) | 7 |
| Kpn2I | TCCGGA | 1 cut(s) | 702 |
| Kzo9I | GATC | 4 cut(s) | 296, 378, 424, 622 |
| LmnI | GCTCC | 1 cut(s) | 170 |
| Lsp1109I | GCAGC | 2 cut(s) | 246, 323 |
| LweI | GCATC | 2 cut(s) | 342, 585 |
| MaeII | ACGT | 1 cut(s) | 520 |
| MalI | GATC | 4 cut(s) | 298, 380, 426, 624 |
| MboI | GATC | 4 cut(s) | 296, 378, 424, 622 |
| MboII | GAAGA | 5 cut(s) | 6, 146, 173, 337, 467 |
| MfeI | CAATTG | 1 cut(s) | 84 |
| MflI | RGATCY | 3 cut(s) | 378, 424, 622 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MluCI | AATT | 7 cut(s) | 77, 84, 146, 165, 531, 732, 748 |
| Mly113I | GGCGCC | 1 cut(s) | 8 |
| MnlI | CCTC | 7 cut(s) | 55, 88, 134, 189, 438, 451, 600 |
| MroI | TCCGGA | 1 cut(s) | 702 |
| MseI | TTAA | 3 cut(s) | 20, 485, 738 |
| MslI | CAYNNNNRTG | 1 cut(s) | 617 |
| MspI | CCGG | 1 cut(s) | 703 |
| MspR9I | CCNGG | 3 cut(s) | 366, 435, 665 |
| MunI | CAATTG | 1 cut(s) | 84 |
| Mva1269I | GAATGC | 1 cut(s) | 584 |
| MvaI | CCWGG | 3 cut(s) | 366, 435, 665 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 243 |
| NarI | GGCGCC | 1 cut(s) | 8 |
| NdeII | GATC | 4 cut(s) | 296, 378, 424, 622 |
| NlaIII | CATG | 5 cut(s) | 160, 241, 352, 607, 622 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 426, 624 |
| NmeAIII | GCCGAG | 1 cut(s) | 536 |
| PagI | TCATGA | 2 cut(s) | 348, 603 |
| PctI | GAATGC | 1 cut(s) | 584 |
| PkrI | GCNGC | 2 cut(s) | 236, 313 |
| PluTI | GGCGCC | 1 cut(s) | 11 |
| Psp6I | CCWGG | 3 cut(s) | 364, 433, 663 |
| PspFI | CCCAGC | 1 cut(s) | 566 |
| PspGI | CCWGG | 3 cut(s) | 364, 433, 663 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 426, 624 |
| PsuI | RGATCY | 3 cut(s) | 378, 424, 622 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 617 |
| SalI | GTCGAC | 1 cut(s) | 449 |
| SaqAI | TTAA | 3 cut(s) | 20, 485, 738 |
| SatI | GCNGC | 2 cut(s) | 235, 312 |
| Sau3AI | GATC | 4 cut(s) | 296, 378, 424, 622 |
| ScrFI | CCNGG | 3 cut(s) | 366, 435, 665 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SetI | ASST | 9 cut(s) | 99, 122, 175, 200, 248, 316, 439, 523, 673 |
| SfaNI | GCATC | 2 cut(s) | 342, 585 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SfoI | GGCGCC | 1 cut(s) | 9 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 617 |
| Sse9I | AATT | 7 cut(s) | 77, 84, 146, 165, 531, 732, 748 |
| SsiI | CCGC | 1 cut(s) | 582 |
| SspDI | GGCGCC | 1 cut(s) | 7 |
| StyD4I | CCNGG | 3 cut(s) | 364, 433, 663 |
| StyI | CCWWGG | 2 cut(s) | 630, 654 |
| TaaI | ACNGT | 5 cut(s) | 178, 265, 335, 412, 479 |
| TaiI | ACGT | 1 cut(s) | 523 |
| TaqI | TCGA | 4 cut(s) | 252, 316, 450, 576 |
| TasI | AATT | 7 cut(s) | 77, 84, 146, 165, 531, 732, 748 |
| Tru1I | TTAA | 3 cut(s) | 20, 485, 738 |
| Tru9I | TTAA | 3 cut(s) | 20, 485, 738 |
| TscAI | CASTG | 1 cut(s) | 484 |
| TseI | GCWGC | 2 cut(s) | 234, 311 |
| TspDTI | ATGAA | 5 cut(s) | 337, 592, 663, 711, 723 |
| TspRI | CASTG | 1 cut(s) | 484 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 59, 432 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 372 |
| XmiI | GTMKAC | 1 cut(s) | 450 |