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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 133 |
| AccB1I | GGYRCC | 1 cut(s) | 175 |
| AciI | CCGC | 2 cut(s) | 854, 1160 |
| AclWI | GGATC | 3 cut(s) | 309, 676, 982 |
| AcoI | YGGCCR | 1 cut(s) | 322 |
| AcsI | RAATTY | 2 cut(s) | 559, 569 |
| AcuI | CTGAAG | 2 cut(s) | 648, 954 |
| AfaI | GTAC | 4 cut(s) | 257, 419, 723, 1029 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 149, 545 |
| AgsI | TTSAA | 8 cut(s) | 235, 496, 576, 631, 763, 1069, 1280, 1360 |
| AjnI | CCWGG | 3 cut(s) | 324, 712, 1018 |
| AjuI | GAANNNNNNNTTGG | 7 cut(s) | 131, 163, 1239, 1271, 1385, 1391, 1417 |
| AluBI | AGCT | 5 cut(s) | 32, 38, 212, 866, 1172 |
| AluI | AGCT | 5 cut(s) | 32, 38, 212, 866, 1172 |
| Alw26I | GTCTC | 2 cut(s) | 832, 1138 |
| AlwI | GGATC | 3 cut(s) | 309, 676, 982 |
| Ama87I | CYCGRG | 1 cut(s) | 1010 |
| AoxI | GGCC | 4 cut(s) | 322, 500, 1353, 1377 |
| ApeKI | GCWGC | 3 cut(s) | 23, 212, 518 |
| ApoI | RAATTY | 2 cut(s) | 559, 569 |
| AspS9I | GGNCC | 1 cut(s) | 500 |
| AsuHPI | GGTGA | 4 cut(s) | 113, 662, 968, 1275 |
| AvaI | CYCGRG | 1 cut(s) | 1010 |
| BalI | TGGCCA | 1 cut(s) | 324 |
| BanI | GGYRCC | 1 cut(s) | 175 |
| BanII | GRGCYC | 1 cut(s) | 704 |
| BbsI | GAAGAC | 1 cut(s) | 111 |
| BbvI | GCAGC | 3 cut(s) | 35, 199, 530 |
| BccI | CCATC | 2 cut(s) | 641, 947 |
| BceAI | ACGGC | 1 cut(s) | 488 |
| BciT130I | CCWGG | 3 cut(s) | 326, 714, 1020 |
| BciVI | GTATCC | 3 cut(s) | 601, 720, 1026 |
| BcoDI | GTCTC | 2 cut(s) | 832, 1138 |
| BfaI | CTAG | 1 cut(s) | 435 |
| BfmI | CTRYAG | 3 cut(s) | 21, 39, 455 |
| BfuAI | ACCTGC | 1 cut(s) | 133 |
| BfuI | GTATCC | 3 cut(s) | 601, 720, 1026 |
| BisI | GCNGC | 3 cut(s) | 24, 213, 519 |
| BlsI | GCNGC | 3 cut(s) | 25, 214, 520 |
| Bme1390I | CCNGG | 3 cut(s) | 326, 714, 1020 |
| BmeT110I | CYCGRG | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 1 cut(s) | 500 |
| BmiI | GGNNCC | 3 cut(s) | 9, 177, 701 |
| BmrFI | CCNGG | 3 cut(s) | 326, 714, 1020 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BpiI | GAAGAC | 1 cut(s) | 111 |
| BpmI | CTGGAG | 1 cut(s) | 285 |
| Bsa29I | ATCGAT | 1 cut(s) | 313 |
| BsaBI | GATNNNNATC | 1 cut(s) | 309 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 401, 431, 911, 941, 1217, 1247 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 149, 545 |
| Bse1I | ACTGG | 5 cut(s) | 471, 503, 550, 1292, 1330 |
| Bse3DI | GCAATG | 2 cut(s) | 849, 1155 |
| Bse8I | GATNNNNATC | 1 cut(s) | 309 |
| BseBI | CCWGG | 3 cut(s) | 326, 714, 1020 |
| BseCI | ATCGAT | 1 cut(s) | 313 |
| BseGI | GGATG | 1 cut(s) | 169 |
| BseJI | GATNNNNATC | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 149, 545 |
| BseMI | GCAATG | 2 cut(s) | 849, 1155 |
| BseMII | CTCAG | 1 cut(s) | 1365 |
| BseNI | ACTGG | 5 cut(s) | 471, 503, 550, 1292, 1330 |
| BseRI | GAGGAG | 6 cut(s) | 848, 872, 935, 1154, 1178, 1241 |
| BseXI | GCAGC | 3 cut(s) | 35, 199, 530 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| BshFI | GGCC | 4 cut(s) | 324, 502, 1355, 1379 |
| BshNI | GGYRCC | 1 cut(s) | 175 |
| BshVI | ATCGAT | 1 cut(s) | 313 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1010 |
| BslFI | GGGAC | 2 cut(s) | 887, 1193 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 149, 545 |
| BsmAI | GTCTC | 2 cut(s) | 832, 1138 |
| BsmFI | GGGAC | 2 cut(s) | 887, 1193 |
| BsnI | GGCC | 4 cut(s) | 324, 502, 1355, 1379 |
| BsoBI | CYCGRG | 1 cut(s) | 1010 |
| Bsp1286I | GDGCHC | 1 cut(s) | 704 |
| Bsp1407I | TGTACA | 1 cut(s) | 255 |
| Bsp143I | GATC | 3 cut(s) | 314, 668, 974 |
| BspACI | CCGC | 2 cut(s) | 854, 1160 |
| BspANI | GGCC | 4 cut(s) | 324, 502, 1355, 1379 |
| BspCNI | CTCAG | 1 cut(s) | 1366 |
| BspDI | ATCGAT | 1 cut(s) | 313 |
| BspLI | GGNNCC | 3 cut(s) | 9, 177, 701 |
| BspMAI | CTGCAG | 1 cut(s) | 25 |
| BspMI | ACCTGC | 1 cut(s) | 133 |
| BspPI | GGATC | 3 cut(s) | 309, 676, 982 |
| BspT107I | GGYRCC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 2 cut(s) | 849, 1155 |
| BsrGI | TGTACA | 1 cut(s) | 255 |
| BsrI | ACTGG | 5 cut(s) | 471, 503, 550, 1292, 1330 |
| BssMI | GATC | 3 cut(s) | 314, 668, 974 |
| Bst2UI | CCWGG | 3 cut(s) | 326, 714, 1020 |
| Bst6I | CTCTTC | 5 cut(s) | 65, 789, 1095, 1260, 1410 |
| BstAUI | TGTACA | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 1 cut(s) | 1353 |
| BstDEI | CTNAG | 4 cut(s) | 705, 867, 1173, 1374 |
| BstF5I | GGATG | 1 cut(s) | 169 |
| BstKTI | GATC | 3 cut(s) | 317, 671, 977 |
| BstMAI | GTCTC | 2 cut(s) | 832, 1138 |
| BstMBI | GATC | 3 cut(s) | 314, 668, 974 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstNI | CCWGG | 3 cut(s) | 326, 714, 1020 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSCI | CCNGG | 3 cut(s) | 324, 712, 1018 |
| BstSFI | CTRYAG | 3 cut(s) | 21, 39, 455 |
| BstV1I | GCAGC | 3 cut(s) | 35, 199, 530 |
| BstV2I | GAAGAC | 1 cut(s) | 111 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1345 |
| Bsu15I | ATCGAT | 1 cut(s) | 313 |
| BsuI | GTATCC | 3 cut(s) | 601, 720, 1026 |
| BsuRI | GGCC | 4 cut(s) | 324, 502, 1355, 1379 |
| BsuTUI | ATCGAT | 1 cut(s) | 313 |
| BtgZI | GCGATG | 1 cut(s) | 410 |
| BtsCI | GGATG | 1 cut(s) | 169 |
| BtsI | GCAGTG | 2 cut(s) | 66, 108 |
| BtsIMutI | CAGTG | 5 cut(s) | 66, 108, 510, 543, 1299 |
| BveI | ACCTGC | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 1353 |
| Cfr13I | GGNCC | 1 cut(s) | 500 |
| ClaI | ATCGAT | 1 cut(s) | 313 |
| Csp6I | GTAC | 4 cut(s) | 256, 418, 722, 1028 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 532, 567, 1369, 1404 |
| CviAII | CATG | 5 cut(s) | 365, 386, 430, 913, 1219 |
| CviQI | GTAC | 4 cut(s) | 256, 418, 722, 1028 |
| DdeI | CTNAG | 4 cut(s) | 705, 867, 1173, 1374 |
| DpnI | GATC | 3 cut(s) | 316, 670, 976 |
| DpnII | GATC | 3 cut(s) | 314, 668, 974 |
| DraI | TTTAAA | 1 cut(s) | 558 |
| EaeI | YGGCCR | 1 cut(s) | 322 |
| Eam1104I | CTCTTC | 5 cut(s) | 65, 789, 1095, 1260, 1410 |
| EarI | CTCTTC | 5 cut(s) | 65, 789, 1095, 1260, 1410 |
| Eco147I | AGGCCT | 1 cut(s) | 1355 |
| Eco24I | GRGCYC | 1 cut(s) | 704 |
| Eco32I | GATATC | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 2 cut(s) | 648, 954 |
| Eco88I | CYCGRG | 1 cut(s) | 1010 |
| EcoRII | CCWGG | 3 cut(s) | 324, 712, 1018 |
| EcoRV | GATATC | 1 cut(s) | 340 |
| EcoT22I | ATGCAT | 2 cut(s) | 169, 370 |
| EcoT38I | GRGCYC | 1 cut(s) | 704 |
| FaeI | CATG | 5 cut(s) | 368, 389, 433, 916, 1222 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 860, 892, 1166, 1198 |
| FaqI | GGGAC | 2 cut(s) | 887, 1193 |
| FatI | CATG | 5 cut(s) | 364, 385, 429, 912, 1218 |
| Fnu4HI | GCNGC | 3 cut(s) | 24, 213, 519 |
| FokI | GGATG | 1 cut(s) | 176 |
| FriOI | GRGCYC | 1 cut(s) | 704 |
| Fsp4HI | GCNGC | 3 cut(s) | 24, 213, 519 |
| FspBI | CTAG | 1 cut(s) | 435 |
| GluI | GCNGC | 3 cut(s) | 24, 213, 519 |
| GsuI | CTGGAG | 1 cut(s) | 285 |
| HaeIII | GGCC | 4 cut(s) | 324, 502, 1355, 1379 |
| Hin1II | CATG | 5 cut(s) | 368, 389, 433, 916, 1222 |
| HinfI | GANTC | 4 cut(s) | 797, 1103, 1247, 1280 |
| HphI | GGTGA | 4 cut(s) | 113, 662, 968, 1275 |
| Hpy188I | TCNGA | 5 cut(s) | 646, 673, 952, 979, 1369 |
| Hpy188III | TCNNGA | 7 cut(s) | 302, 374, 620, 631, 666, 972, 1338 |
| HpyAV | CCTTC | 3 cut(s) | 49, 400, 1354 |
| HpyCH4IV | ACGT | 1 cut(s) | 610 |
| HpyCH4V | TGCA | 8 cut(s) | 23, 64, 113, 167, 215, 292, 368, 1322 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 4 cut(s) | 705, 867, 1173, 1374 |
| HpySE526I | ACGT | 1 cut(s) | 610 |
| Hsp92II | CATG | 5 cut(s) | 368, 389, 433, 916, 1222 |
| Kzo9I | GATC | 3 cut(s) | 314, 668, 974 |
| LmnI | GCTCC | 3 cut(s) | 13, 699, 1348 |
| Lsp1109I | GCAGC | 3 cut(s) | 35, 199, 530 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 1 cut(s) | 435 |
| MaeII | ACGT | 1 cut(s) | 610 |
| MaeIII | GTNAC | 1 cut(s) | 1294 |
| MalI | GATC | 3 cut(s) | 316, 670, 976 |
| MboI | GATC | 3 cut(s) | 314, 668, 974 |
| MhlI | GDGCHC | 1 cut(s) | 704 |
| MlsI | TGGCCA | 1 cut(s) | 324 |
| MluCI | AATT | 9 cut(s) | 144, 194, 242, 528, 559, 569, 894, 1200, 1386 |
| MluNI | TGGCCA | 1 cut(s) | 324 |
| MlyI | GAGTC | 2 cut(s) | 806, 1112 |
| MmeI | TCCRAC | 1 cut(s) | 1383 |
| Mox20I | TGGCCA | 1 cut(s) | 324 |
| Mph1103I | ATGCAT | 2 cut(s) | 169, 370 |
| MscI | TGGCCA | 1 cut(s) | 324 |
| MseI | TTAA | 3 cut(s) | 245, 398, 557 |
| Msp20I | TGGCCA | 1 cut(s) | 324 |
| MspA1I | CMGCKG | 1 cut(s) | 212 |
| MspR9I | CCNGG | 3 cut(s) | 326, 714, 1020 |
| MvaI | CCWGG | 3 cut(s) | 326, 714, 1020 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NdeII | GATC | 3 cut(s) | 314, 668, 974 |
| NlaIII | CATG | 5 cut(s) | 368, 389, 433, 916, 1222 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 177, 701 |
| NmuCI | GTSAC | 1 cut(s) | 1294 |
| NsiI | ATGCAT | 2 cut(s) | 169, 370 |
| NspI | RCATGY | 1 cut(s) | 368 |
| PceI | AGGCCT | 1 cut(s) | 1355 |
| PfeI | GAWTC | 2 cut(s) | 1247, 1280 |
| PkrI | GCNGC | 3 cut(s) | 25, 214, 520 |
| PleI | GAGTC | 2 cut(s) | 805, 1111 |
| PpsI | GAGTC | 2 cut(s) | 805, 1111 |
| Psp6I | CCWGG | 3 cut(s) | 324, 712, 1018 |
| PspGI | CCWGG | 3 cut(s) | 324, 712, 1018 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 177, 701 |
| PspPI | GGNCC | 1 cut(s) | 500 |
| PstI | CTGCAG | 1 cut(s) | 25 |
| PvuII | CAGCTG | 1 cut(s) | 212 |
| RsaI | GTAC | 4 cut(s) | 257, 419, 723, 1029 |
| RsaNI | GTAC | 4 cut(s) | 256, 418, 722, 1028 |
| SaqAI | TTAA | 3 cut(s) | 245, 398, 557 |
| SatI | GCNGC | 3 cut(s) | 24, 213, 519 |
| Sau3AI | GATC | 3 cut(s) | 314, 668, 974 |
| Sau96I | GGNCC | 1 cut(s) | 500 |
| SchI | GAGTC | 2 cut(s) | 806, 1112 |
| ScrFI | CCNGG | 3 cut(s) | 326, 714, 1020 |
| SduI | GDGCHC | 1 cut(s) | 704 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| SfcI | CTRYAG | 3 cut(s) | 21, 39, 455 |
| SmiI | ATTTAAAT | 1 cut(s) | 558 |
| Sse9I | AATT | 9 cut(s) | 144, 194, 242, 528, 559, 569, 894, 1200, 1386 |
| SseBI | AGGCCT | 1 cut(s) | 1355 |
| SsiI | CCGC | 2 cut(s) | 854, 1160 |
| SspI | AATATT | 1 cut(s) | 396 |
| SspMI | CTAG | 1 cut(s) | 435 |
| StuI | AGGCCT | 1 cut(s) | 1355 |
| StyD4I | CCNGG | 3 cut(s) | 324, 712, 1018 |
| SwaI | ATTTAAAT | 1 cut(s) | 558 |
| TaiI | ACGT | 1 cut(s) | 613 |
| TaqI | TCGA | 1 cut(s) | 313 |
| TasI | AATT | 9 cut(s) | 144, 194, 242, 528, 559, 569, 894, 1200, 1386 |
| TatI | WGTACW | 1 cut(s) | 255 |
| TfiI | GAWTC | 2 cut(s) | 1247, 1280 |
| Tru1I | TTAA | 3 cut(s) | 245, 398, 557 |
| Tru9I | TTAA | 3 cut(s) | 245, 398, 557 |
| TscAI | CASTG | 5 cut(s) | 66, 115, 510, 550, 1299 |
| TseFI | GTSAC | 1 cut(s) | 1294 |
| TseI | GCWGC | 3 cut(s) | 23, 212, 518 |
| Tsp45I | GTSAC | 1 cut(s) | 1294 |
| TspDTI | ATGAA | 5 cut(s) | 68, 83, 744, 1050, 1323 |
| TspRI | CASTG | 5 cut(s) | 66, 115, 510, 550, 1299 |
| XapI | RAATTY | 2 cut(s) | 559, 569 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XspI | CTAG | 1 cut(s) | 435 |
| Zsp2I | ATGCAT | 2 cut(s) | 169, 370 |