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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 493 |
| AccII | CGCG | 1 cut(s) | 600 |
| AccIII | TCCGGA | 1 cut(s) | 987 |
| AciI | CCGC | 2 cut(s) | 835, 867 |
| AclWI | GGATC | 5 cut(s) | 173, 258, 701, 902, 915 |
| AcuI | CTGAAG | 1 cut(s) | 639 |
| AcyI | GRCGYC | 1 cut(s) | 494 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 22, 297 |
| AgsI | TTSAA | 2 cut(s) | 47, 483 |
| AjnI | CCWGG | 1 cut(s) | 456 |
| AluBI | AGCT | 5 cut(s) | 6, 71, 154, 243, 659 |
| AluI | AGCT | 5 cut(s) | 6, 71, 154, 243, 659 |
| AlwI | GGATC | 5 cut(s) | 173, 258, 701, 902, 915 |
| Aor13HI | TCCGGA | 1 cut(s) | 987 |
| AoxI | GGCC | 1 cut(s) | 832 |
| ApeKI | GCWGC | 1 cut(s) | 243 |
| AseI | ATTAAT | 1 cut(s) | 164 |
| AspLEI | GCGC | 3 cut(s) | 496, 885, 958 |
| AsuC2I | CCSGG | 1 cut(s) | 750 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AxyI | CCTNAGG | 1 cut(s) | 546 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 594, 627 |
| BamHI | GGATCC | 1 cut(s) | 907 |
| BanI | GGYRCC | 1 cut(s) | 493 |
| BauI | CACGAG | 1 cut(s) | 539 |
| BbvI | GCAGC | 1 cut(s) | 230 |
| BccI | CCATC | 3 cut(s) | 58, 91, 505 |
| BceAI | ACGGC | 1 cut(s) | 669 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 523, 557, 766, 800 |
| BciT130I | CCWGG | 1 cut(s) | 458 |
| BcnI | CCSGG | 1 cut(s) | 750 |
| BfaI | CTAG | 2 cut(s) | 105, 593 |
| BfoI | RGCGCY | 2 cut(s) | 497, 959 |
| BisI | GCNGC | 2 cut(s) | 244, 835 |
| BlsI | GCNGC | 2 cut(s) | 245, 836 |
| Bme1390I | CCNGG | 2 cut(s) | 458, 750 |
| BmiI | GGNNCC | 2 cut(s) | 495, 909 |
| BmrFI | CCNGG | 2 cut(s) | 458, 750 |
| BmsI | GCATC | 1 cut(s) | 870 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| BpuEI | CTTGAG | 1 cut(s) | 951 |
| BpuMI | CCSGG | 1 cut(s) | 750 |
| BsaHI | GRCGYC | 1 cut(s) | 494 |
| BsaJI | CCNNGG | 2 cut(s) | 915, 939 |
| BsaWI | WCCGGW | 1 cut(s) | 987 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 243, 273, 648, 678 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 22, 297 |
| Bse21I | CCTNAGG | 1 cut(s) | 546 |
| BseAI | TCCGGA | 1 cut(s) | 987 |
| BseBI | CCWGG | 1 cut(s) | 458 |
| BseDI | CCNNGG | 2 cut(s) | 915, 939 |
| BseGI | GGATG | 2 cut(s) | 102, 286 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 22, 297 |
| BseMII | CTCAG | 3 cut(s) | 120, 137, 560 |
| BseXI | GCAGC | 1 cut(s) | 230 |
| BseYI | CCCAGC | 1 cut(s) | 851 |
| Bsh1236I | CGCG | 1 cut(s) | 600 |
| Bsh1285I | CGRYCG | 1 cut(s) | 16 |
| BshFI | GGCC | 1 cut(s) | 834 |
| BshNI | GGYRCC | 1 cut(s) | 493 |
| BsiEI | CGRYCG | 1 cut(s) | 16 |
| BsiSI | CCGG | 2 cut(s) | 749, 988 |
| BslFI | GGGAC | 2 cut(s) | 198, 908 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 22, 297 |
| BsmFI | GGGAC | 2 cut(s) | 198, 908 |
| BsmI | GAATGC | 1 cut(s) | 869 |
| BsnI | GGCC | 1 cut(s) | 834 |
| Bsp13I | TCCGGA | 1 cut(s) | 987 |
| Bsp143I | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| BspACI | CCGC | 2 cut(s) | 835, 867 |
| BspANI | GGCC | 1 cut(s) | 834 |
| BspCNI | CTCAG | 3 cut(s) | 121, 138, 559 |
| BspEI | TCCGGA | 1 cut(s) | 987 |
| BspFNI | CGCG | 1 cut(s) | 600 |
| BspHI | TCATGA | 1 cut(s) | 888 |
| BspLI | GGNNCC | 2 cut(s) | 495, 909 |
| BspPI | GGATC | 5 cut(s) | 173, 258, 701, 902, 915 |
| BspT107I | GGYRCC | 1 cut(s) | 493 |
| BssECI | CCNNGG | 2 cut(s) | 915, 939 |
| BssMI | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| BssNI | GRCGYC | 1 cut(s) | 494 |
| BssSI | CACGAG | 1 cut(s) | 539 |
| BssT1I | CCWWGG | 2 cut(s) | 915, 939 |
| Bst2BI | CACGAG | 1 cut(s) | 539 |
| Bst2UI | CCWGG | 1 cut(s) | 458 |
| Bst4CI | ACNGT | 5 cut(s) | 17, 29, 664, 727, 794 |
| Bst6I | CTCTTC | 5 cut(s) | 45, 78, 336, 363, 390 |
| BstACI | GRCGYC | 1 cut(s) | 494 |
| BstC8I | GCNNGC | 3 cut(s) | 188, 241, 640 |
| BstDEI | CTNAG | 4 cut(s) | 72, 129, 146, 546 |
| BstF5I | GGATG | 2 cut(s) | 102, 286 |
| BstFNI | CGCG | 1 cut(s) | 600 |
| BstH2I | RGCGCY | 2 cut(s) | 497, 959 |
| BstHHI | GCGC | 3 cut(s) | 496, 885, 958 |
| BstKTI | GATC | 5 cut(s) | 181, 266, 696, 830, 910 |
| BstMBI | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| BstMCI | CGRYCG | 1 cut(s) | 16 |
| BstNI | CCWGG | 1 cut(s) | 458 |
| BstNSI | RCATGY | 1 cut(s) | 190 |
| BstSCI | CCNGG | 2 cut(s) | 456, 748 |
| BstUI | CGCG | 1 cut(s) | 600 |
| BstV1I | GCAGC | 1 cut(s) | 230 |
| BstX2I | RGATCY | 3 cut(s) | 263, 693, 907 |
| BstYI | RGATCY | 3 cut(s) | 263, 693, 907 |
| Bsu36I | CCTNAGG | 1 cut(s) | 546 |
| BsuRI | GGCC | 1 cut(s) | 834 |
| BtsCI | GGATG | 2 cut(s) | 102, 286 |
| BtsI | GCAGTG | 1 cut(s) | 862 |
| BtsIMutI | CAGTG | 2 cut(s) | 799, 862 |
| Cac8I | GCNNGC | 3 cut(s) | 188, 241, 640 |
| CciI | TCATGA | 1 cut(s) | 888 |
| CfoI | GCGC | 3 cut(s) | 496, 885, 958 |
| CsiI | ACCWGGT | 1 cut(s) | 456 |
| CviAII | CATG | 5 cut(s) | 187, 449, 643, 889, 904 |
| DdeI | CTNAG | 4 cut(s) | 72, 129, 146, 546 |
| DinI | GGCGCC | 1 cut(s) | 495 |
| DpnI | GATC | 5 cut(s) | 180, 265, 695, 829, 909 |
| DpnII | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| DraI | TTTAAA | 2 cut(s) | 21, 507 |
| Eam1104I | CTCTTC | 5 cut(s) | 45, 78, 336, 363, 390 |
| EarI | CTCTTC | 5 cut(s) | 45, 78, 336, 363, 390 |
| Eco130I | CCWWGG | 2 cut(s) | 915, 939 |
| Eco57I | CTGAAG | 1 cut(s) | 639 |
| Eco81I | CCTNAGG | 1 cut(s) | 546 |
| EcoRII | CCWGG | 1 cut(s) | 456 |
| EcoT14I | CCWWGG | 2 cut(s) | 915, 939 |
| EgeI | GGCGCC | 1 cut(s) | 495 |
| EheI | GGCGCC | 1 cut(s) | 495 |
| ErhI | CCWWGG | 2 cut(s) | 915, 939 |
| FaeI | CATG | 5 cut(s) | 190, 452, 646, 892, 907 |
| FaqI | GGGAC | 2 cut(s) | 198, 908 |
| FatI | CATG | 5 cut(s) | 186, 448, 642, 888, 903 |
| FauI | CCCGC | 1 cut(s) | 860 |
| Fnu4HI | GCNGC | 2 cut(s) | 244, 835 |
| FokI | GGATG | 2 cut(s) | 109, 293 |
| Fsp4HI | GCNGC | 2 cut(s) | 244, 835 |
| FspBI | CTAG | 2 cut(s) | 105, 593 |
| GlaI | GCGC | 3 cut(s) | 495, 884, 957 |
| GluI | GCNGC | 2 cut(s) | 244, 835 |
| GsaI | CCCAGC | 1 cut(s) | 855 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 2 cut(s) | 497, 959 |
| HaeIII | GGCC | 1 cut(s) | 834 |
| HapII | CCGG | 2 cut(s) | 749, 988 |
| HhaI | GCGC | 3 cut(s) | 496, 885, 958 |
| Hin1I | GRCGYC | 1 cut(s) | 494 |
| Hin1II | CATG | 5 cut(s) | 190, 452, 646, 892, 907 |
| Hin6I | GCGC | 3 cut(s) | 494, 883, 956 |
| HinP1I | GCGC | 3 cut(s) | 494, 883, 956 |
| HincII | GTYRAC | 1 cut(s) | 475 |
| HindII | GTYRAC | 1 cut(s) | 475 |
| HinfI | GANTC | 2 cut(s) | 148, 740 |
| HpaII | CCGG | 2 cut(s) | 749, 988 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 2 cut(s) | 475, 790 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy8I | GTNNAC | 2 cut(s) | 475, 790 |
| HpyAV | CCTTC | 6 cut(s) | 53, 320, 367, 616, 921, 1025 |
| HpyCH4III | ACNGT | 5 cut(s) | 17, 29, 664, 727, 794 |
| HpyCH4V | TGCA | 2 cut(s) | 638, 713 |
| HpyF3I | CTNAG | 4 cut(s) | 72, 129, 146, 546 |
| Hsp92I | GRCGYC | 1 cut(s) | 494 |
| Hsp92II | CATG | 5 cut(s) | 190, 452, 646, 892, 907 |
| HspAI | GCGC | 3 cut(s) | 494, 883, 956 |
| KasI | GGCGCC | 1 cut(s) | 493 |
| Kpn2I | TCCGGA | 1 cut(s) | 987 |
| Kzo9I | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| LmnI | GCTCC | 2 cut(s) | 136, 656 |
| Lsp1109I | GCAGC | 1 cut(s) | 230 |
| LweI | GCATC | 1 cut(s) | 870 |
| MabI | ACCWGGT | 1 cut(s) | 456 |
| MaeI | CTAG | 2 cut(s) | 105, 593 |
| MalI | GATC | 5 cut(s) | 180, 265, 695, 829, 909 |
| MboI | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| MfeI | CAATTG | 3 cut(s) | 116, 570, 975 |
| MflI | RGATCY | 3 cut(s) | 263, 693, 907 |
| MluCI | AATT | 9 cut(s) | 116, 161, 165, 172, 201, 570, 632, 811, 975 |
| Mly113I | GGCGCC | 1 cut(s) | 494 |
| MlyI | GAGTC | 1 cut(s) | 157 |
| MroI | TCCGGA | 1 cut(s) | 987 |
| MseI | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 465, 506 |
| MslI | CAYNNNNRTG | 1 cut(s) | 902 |
| MspI | CCGG | 2 cut(s) | 749, 988 |
| MspR9I | CCNGG | 2 cut(s) | 458, 750 |
| MunI | CAATTG | 3 cut(s) | 116, 570, 975 |
| Mva1269I | GAATGC | 1 cut(s) | 869 |
| MvaI | CCWGG | 1 cut(s) | 458 |
| MvnI | CGCG | 1 cut(s) | 600 |
| NarI | GGCGCC | 1 cut(s) | 494 |
| NciI | CCSGG | 1 cut(s) | 750 |
| NdeII | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| NlaIII | CATG | 5 cut(s) | 190, 452, 646, 892, 907 |
| NlaIV | GGNNCC | 2 cut(s) | 495, 909 |
| NspI | RCATGY | 1 cut(s) | 190 |
| PaeI | GCATGC | 1 cut(s) | 190 |
| PagI | TCATGA | 1 cut(s) | 888 |
| PctI | GAATGC | 1 cut(s) | 869 |
| PfeI | GAWTC | 1 cut(s) | 740 |
| PkrI | GCNGC | 2 cut(s) | 245, 836 |
| PleI | GAGTC | 1 cut(s) | 156 |
| PluTI | GGCGCC | 1 cut(s) | 497 |
| PpsI | GAGTC | 1 cut(s) | 156 |
| PshBI | ATTAAT | 1 cut(s) | 164 |
| Psp6I | CCWGG | 1 cut(s) | 456 |
| PspFI | CCCAGC | 1 cut(s) | 851 |
| PspGI | CCWGG | 1 cut(s) | 456 |
| PspN4I | GGNNCC | 2 cut(s) | 495, 909 |
| PsuI | RGATCY | 3 cut(s) | 263, 693, 907 |
| RseI | CAYNNNNRTG | 1 cut(s) | 902 |
| SaqAI | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 465, 506 |
| SatI | GCNGC | 2 cut(s) | 244, 835 |
| Sau3AI | GATC | 5 cut(s) | 178, 263, 693, 827, 907 |
| SchI | GAGTC | 1 cut(s) | 157 |
| ScrFI | CCNGG | 2 cut(s) | 458, 750 |
| SetI | ASST | 9 cut(s) | 8, 73, 156, 245, 256, 462, 585, 608, 661 |
| SexAI | ACCWGGT | 1 cut(s) | 456 |
| SfaNI | GCATC | 1 cut(s) | 870 |
| SfoI | GGCGCC | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 902 |
| SmlI | CTYRAG | 1 cut(s) | 966 |
| SmoI | CTYRAG | 1 cut(s) | 966 |
| SphI | GCATGC | 1 cut(s) | 190 |
| Sse9I | AATT | 9 cut(s) | 116, 161, 165, 172, 201, 570, 632, 811, 975 |
| SsiI | CCGC | 2 cut(s) | 835, 867 |
| SspDI | GGCGCC | 1 cut(s) | 493 |
| SspMI | CTAG | 2 cut(s) | 105, 593 |
| StyD4I | CCNGG | 2 cut(s) | 456, 748 |
| StyI | CCWWGG | 2 cut(s) | 915, 939 |
| TaaI | ACNGT | 5 cut(s) | 17, 29, 664, 727, 794 |
| TaqI | TCGA | 2 cut(s) | 765, 861 |
| TasI | AATT | 9 cut(s) | 116, 161, 165, 172, 201, 570, 632, 811, 975 |
| TauI | GCSGC | 1 cut(s) | 837 |
| TfiI | GAWTC | 1 cut(s) | 740 |
| Tru1I | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 465, 506 |
| Tru9I | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 465, 506 |
| TscAI | CASTG | 2 cut(s) | 799, 862 |
| TseI | GCWGC | 1 cut(s) | 243 |
| TspRI | CASTG | 2 cut(s) | 799, 862 |
| VspI | ATTAAT | 1 cut(s) | 164 |
| XbaI | TCTAGA | 1 cut(s) | 592 |
| XceI | RCATGY | 1 cut(s) | 190 |
| XspI | CTAG | 2 cut(s) | 105, 593 |