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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 113, 177, 306 |
| AccII | CGCG | 1 cut(s) | 360 |
| AciI | CCGC | 2 cut(s) | 158, 737 |
| AclWI | GGATC | 1 cut(s) | 289 |
| AcoI | YGGCCR | 1 cut(s) | 139 |
| AfaI | GTAC | 1 cut(s) | 631 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 437, 527, 616, 727 |
| AflII | CTTAAG | 1 cut(s) | 92 |
| AflIII | ACRYGT | 1 cut(s) | 235 |
| AgsI | TTSAA | 6 cut(s) | 28, 61, 271, 664, 770, 787 |
| AjnI | CCWGG | 1 cut(s) | 391 |
| AluBI | AGCT | 2 cut(s) | 670, 793 |
| AluI | AGCT | 2 cut(s) | 670, 793 |
| Alw21I | GWGCWC | 1 cut(s) | 702 |
| Alw26I | GTCTC | 1 cut(s) | 360 |
| Alw44I | GTGCAC | 1 cut(s) | 698 |
| AlwI | GGATC | 1 cut(s) | 289 |
| AoxI | GGCC | 3 cut(s) | 139, 456, 475 |
| ApaLI | GTGCAC | 1 cut(s) | 698 |
| ApeKI | GCWGC | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 86 |
| AspLEI | GCGC | 2 cut(s) | 533, 754 |
| AspS9I | GGNCC | 1 cut(s) | 475 |
| AsuC2I | CCSGG | 2 cut(s) | 432, 617 |
| AsuHPI | GGTGA | 1 cut(s) | 742 |
| BaeGI | GKGCMC | 1 cut(s) | 702 |
| BalI | TGGCCA | 1 cut(s) | 141 |
| Bbv12I | GWGCWC | 1 cut(s) | 702 |
| BbvI | GCAGC | 1 cut(s) | 167 |
| BccI | CCATC | 1 cut(s) | 277 |
| BciT130I | CCWGG | 1 cut(s) | 393 |
| BciVI | GTATCC | 1 cut(s) | 214 |
| BcnI | CCSGG | 2 cut(s) | 432, 617 |
| BcoDI | GTCTC | 1 cut(s) | 360 |
| BfaI | CTAG | 3 cut(s) | 452, 611, 638 |
| BfmI | CTRYAG | 1 cut(s) | 163 |
| BfoI | RGCGCY | 2 cut(s) | 534, 755 |
| BfrI | CTTAAG | 1 cut(s) | 92 |
| BfuI | GTATCC | 1 cut(s) | 214 |
| BisI | GCNGC | 1 cut(s) | 156 |
| BlsI | GCNGC | 1 cut(s) | 157 |
| Bme1390I | CCNGG | 3 cut(s) | 393, 432, 617 |
| BmgT120I | GGNCC | 1 cut(s) | 475 |
| BmiI | GGNNCC | 1 cut(s) | 476 |
| BmrFI | CCNGG | 3 cut(s) | 393, 432, 617 |
| BmrI | ACTGGG | 1 cut(s) | 481 |
| BmsI | GCATC | 2 cut(s) | 538, 564 |
| BmuI | ACTGGG | 1 cut(s) | 481 |
| BpuMI | CCSGG | 2 cut(s) | 432, 617 |
| BsaAI | YACGTR | 1 cut(s) | 571 |
| BsaBI | GATNNNNATC | 1 cut(s) | 15 |
| BsaI | GGTCTC | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 2 cut(s) | 392, 512 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 437, 527, 616, 727 |
| Bse1I | ACTGG | 2 cut(s) | 298, 476 |
| Bse8I | GATNNNNATC | 1 cut(s) | 15 |
| BseBI | CCWGG | 1 cut(s) | 393 |
| BseDI | CCNNGG | 2 cut(s) | 392, 512 |
| BseGI | GGATG | 1 cut(s) | 625 |
| BseJI | GATNNNNATC | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 437, 527, 616, 727 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseNI | ACTGG | 2 cut(s) | 298, 476 |
| BseSI | GKGCMC | 1 cut(s) | 702 |
| BseXI | GCAGC | 1 cut(s) | 167 |
| Bsh1236I | CGCG | 1 cut(s) | 360 |
| BshFI | GGCC | 3 cut(s) | 141, 458, 477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 702 |
| BsiSI | CCGG | 3 cut(s) | 432, 617, 680 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 437, 527, 616, 727 |
| BsmAI | GTCTC | 1 cut(s) | 360 |
| BsnI | GGCC | 3 cut(s) | 141, 458, 477 |
| Bso31I | GGTCTC | 1 cut(s) | 360 |
| Bsp1286I | GDGCHC | 1 cut(s) | 702 |
| Bsp143I | GATC | 4 cut(s) | 294, 361, 404, 712 |
| Bsp68I | TCGCGA | 1 cut(s) | 360 |
| BspACI | CCGC | 2 cut(s) | 158, 737 |
| BspANI | GGCC | 3 cut(s) | 141, 458, 477 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspFNI | CGCG | 1 cut(s) | 360 |
| BspLI | GGNNCC | 1 cut(s) | 476 |
| BspPI | GGATC | 1 cut(s) | 289 |
| BspTI | CTTAAG | 1 cut(s) | 92 |
| BspTNI | GGTCTC | 1 cut(s) | 360 |
| BsrI | ACTGG | 2 cut(s) | 298, 476 |
| BssECI | CCNNGG | 2 cut(s) | 392, 512 |
| BssMI | GATC | 4 cut(s) | 294, 361, 404, 712 |
| BssNAI | GTATAC | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 1 cut(s) | 512 |
| Bst1107I | GTATAC | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 1 cut(s) | 393 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 311, 778 |
| Bst6I | CTCTTC | 3 cut(s) | 528, 548, 722 |
| BstAFI | CTTAAG | 1 cut(s) | 92 |
| BstBAI | YACGTR | 1 cut(s) | 571 |
| BstC8I | GCNNGC | 2 cut(s) | 449, 504 |
| BstDEI | CTNAG | 1 cut(s) | 369 |
| BstF5I | GGATG | 1 cut(s) | 625 |
| BstFNI | CGCG | 1 cut(s) | 360 |
| BstH2I | RGCGCY | 2 cut(s) | 534, 755 |
| BstHHI | GCGC | 2 cut(s) | 533, 754 |
| BstKTI | GATC | 4 cut(s) | 297, 364, 407, 715 |
| BstMAI | GTCTC | 1 cut(s) | 360 |
| BstMBI | GATC | 4 cut(s) | 294, 361, 404, 712 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 676 |
| BstNI | CCWGG | 1 cut(s) | 393 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstSCI | CCNGG | 3 cut(s) | 391, 430, 615 |
| BstSFI | CTRYAG | 1 cut(s) | 163 |
| BstSLI | GKGCMC | 1 cut(s) | 702 |
| BstUI | CGCG | 1 cut(s) | 360 |
| BstV1I | GCAGC | 1 cut(s) | 167 |
| BstZ17I | GTATAC | 1 cut(s) | 114 |
| BsuI | GTATCC | 1 cut(s) | 214 |
| BsuRI | GGCC | 3 cut(s) | 141, 458, 477 |
| BtgZI | GCGATG | 1 cut(s) | 186 |
| BtsCI | GGATG | 1 cut(s) | 625 |
| BtsIMutI | CAGTG | 3 cut(s) | 328, 469, 708 |
| BtuMI | TCGCGA | 1 cut(s) | 360 |
| Cac8I | GCNNGC | 2 cut(s) | 449, 504 |
| CfoI | GCGC | 2 cut(s) | 533, 754 |
| Cfr13I | GGNCC | 1 cut(s) | 475 |
| Csp6I | GTAC | 1 cut(s) | 630 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 39, 74 |
| CviAII | CATG | 6 cut(s) | 53, 143, 193, 226, 236, 583 |
| CviJI | RGCY | 8 cut(s) | 141, 188, 391, 458, 477, 520, 670, 793 |
| CviKI_1 | RGCY | 8 cut(s) | 141, 188, 391, 458, 477, 520, 670, 793 |
| CviQI | GTAC | 1 cut(s) | 630 |
| DdeI | CTNAG | 1 cut(s) | 369 |
| DpnI | GATC | 4 cut(s) | 296, 363, 406, 714 |
| DpnII | GATC | 4 cut(s) | 294, 361, 404, 712 |
| EaeI | YGGCCR | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 3 cut(s) | 528, 548, 722 |
| EarI | CTCTTC | 3 cut(s) | 528, 548, 722 |
| Eco130I | CCWWGG | 1 cut(s) | 512 |
| Eco31I | GGTCTC | 1 cut(s) | 360 |
| EcoO109I | RGGNCCY | 1 cut(s) | 475 |
| EcoRII | CCWGG | 1 cut(s) | 391 |
| EcoT14I | CCWWGG | 1 cut(s) | 512 |
| ErhI | CCWWGG | 1 cut(s) | 512 |
| FaeI | CATG | 6 cut(s) | 56, 146, 196, 229, 239, 586 |
| FatI | CATG | 6 cut(s) | 52, 142, 192, 225, 235, 582 |
| FblI | GTMKAC | 3 cut(s) | 113, 177, 306 |
| Fnu4HI | GCNGC | 1 cut(s) | 156 |
| FokI | GGATG | 1 cut(s) | 632 |
| Fsp4HI | GCNGC | 1 cut(s) | 156 |
| FspBI | CTAG | 3 cut(s) | 452, 611, 638 |
| GlaI | GCGC | 2 cut(s) | 532, 753 |
| GluI | GCNGC | 1 cut(s) | 156 |
| HaeII | RGCGCY | 2 cut(s) | 534, 755 |
| HaeIII | GGCC | 3 cut(s) | 141, 458, 477 |
| HapII | CCGG | 3 cut(s) | 432, 617, 680 |
| HhaI | GCGC | 2 cut(s) | 533, 754 |
| Hin1II | CATG | 6 cut(s) | 56, 146, 196, 229, 239, 586 |
| Hin6I | GCGC | 2 cut(s) | 531, 752 |
| HinP1I | GCGC | 2 cut(s) | 531, 752 |
| HincII | GTYRAC | 1 cut(s) | 307 |
| HindII | GTYRAC | 1 cut(s) | 307 |
| HpaII | CCGG | 3 cut(s) | 432, 617, 680 |
| HphI | GGTGA | 1 cut(s) | 742 |
| Hpy166II | GTNNAC | 7 cut(s) | 114, 178, 307, 428, 675, 700, 708 |
| Hpy188I | TCNGA | 2 cut(s) | 370, 827 |
| Hpy188III | TCNNGA | 3 cut(s) | 20, 148, 359 |
| Hpy8I | GTNNAC | 7 cut(s) | 114, 178, 307, 428, 675, 700, 708 |
| HpyAV | CCTTC | 2 cut(s) | 431, 469 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 311, 778 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 6 cut(s) | 72, 232, 255, 326, 577, 700 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 676 |
| HpyF3I | CTNAG | 1 cut(s) | 369 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| Hsp92II | CATG | 6 cut(s) | 56, 146, 196, 229, 239, 586 |
| HspAI | GCGC | 2 cut(s) | 531, 752 |
| Kzo9I | GATC | 4 cut(s) | 294, 361, 404, 712 |
| LmnI | GCTCC | 1 cut(s) | 538 |
| LpnPI | CCDG | 8 cut(s) | 311, 378, 405, 445, 457, 477, 630, 693 |
| Lsp1109I | GCAGC | 1 cut(s) | 167 |
| LweI | GCATC | 2 cut(s) | 538, 564 |
| MaeI | CTAG | 3 cut(s) | 452, 611, 638 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 1 cut(s) | 467 |
| MalI | GATC | 4 cut(s) | 296, 363, 406, 714 |
| MboI | GATC | 4 cut(s) | 294, 361, 404, 712 |
| MboII | GAAGA | 6 cut(s) | 115, 283, 286, 515, 565, 709 |
| MfeI | CAATTG | 1 cut(s) | 327 |
| MhlI | GDGCHC | 1 cut(s) | 702 |
| MlsI | TGGCCA | 1 cut(s) | 141 |
| MluCI | AATT | 1 cut(s) | 327 |
| MluNI | TGGCCA | 1 cut(s) | 141 |
| MnlI | CCTC | 5 cut(s) | 92, 190, 345, 531, 592 |
| Mox20I | TGGCCA | 1 cut(s) | 141 |
| MroXI | GAANNNNTTC | 1 cut(s) | 86 |
| MscI | TGGCCA | 1 cut(s) | 141 |
| MseI | TTAA | 2 cut(s) | 93, 216 |
| Msp20I | TGGCCA | 1 cut(s) | 141 |
| MspA1I | CMGCKG | 1 cut(s) | 158 |
| MspCI | CTTAAG | 1 cut(s) | 92 |
| MspI | CCGG | 3 cut(s) | 432, 617, 680 |
| MspR9I | CCNGG | 3 cut(s) | 393, 432, 617 |
| MunI | CAATTG | 1 cut(s) | 327 |
| MvaI | CCWGG | 1 cut(s) | 393 |
| MvnI | CGCG | 1 cut(s) | 360 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 676 |
| NciI | CCSGG | 2 cut(s) | 432, 617 |
| NdeII | GATC | 4 cut(s) | 294, 361, 404, 712 |
| NlaIII | CATG | 6 cut(s) | 56, 146, 196, 229, 239, 586 |
| NlaIV | GGNNCC | 1 cut(s) | 476 |
| NmuCI | GTSAC | 1 cut(s) | 467 |
| NruI | TCGCGA | 1 cut(s) | 360 |
| NspI | RCATGY | 1 cut(s) | 239 |
| PciI | ACATGT | 1 cut(s) | 235 |
| PdmI | GAANNNNTTC | 1 cut(s) | 86 |
| PkrI | GCNGC | 1 cut(s) | 157 |
| Ppu21I | YACGTR | 1 cut(s) | 571 |
| PscI | ACATGT | 1 cut(s) | 235 |
| Psp6I | CCWGG | 1 cut(s) | 391 |
| PspGI | CCWGG | 1 cut(s) | 391 |
| PspN4I | GGNNCC | 1 cut(s) | 476 |
| PspPI | GGNCC | 1 cut(s) | 475 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 97, 129 |
| RruI | TCGCGA | 1 cut(s) | 360 |
| RsaI | GTAC | 1 cut(s) | 631 |
| RsaNI | GTAC | 1 cut(s) | 630 |
| SalI | GTCGAC | 1 cut(s) | 305 |
| SaqAI | TTAA | 2 cut(s) | 93, 216 |
| SatI | GCNGC | 1 cut(s) | 156 |
| Sau3AI | GATC | 4 cut(s) | 294, 361, 404, 712 |
| Sau96I | GGNCC | 1 cut(s) | 475 |
| ScrFI | CCNGG | 3 cut(s) | 393, 432, 617 |
| SduI | GDGCHC | 1 cut(s) | 702 |
| SetI | ASST | 8 cut(s) | 346, 356, 573, 612, 639, 672, 795, 819 |
| SfaNI | GCATC | 2 cut(s) | 538, 564 |
| SfcI | CTRYAG | 1 cut(s) | 163 |
| SmlI | CTYRAG | 1 cut(s) | 92 |
| SmoI | CTYRAG | 1 cut(s) | 92 |
| Sse9I | AATT | 1 cut(s) | 327 |
| SsiI | CCGC | 2 cut(s) | 158, 737 |
| SspMI | CTAG | 3 cut(s) | 452, 611, 638 |
| StyD4I | CCNGG | 3 cut(s) | 391, 430, 615 |
| StyI | CCWWGG | 1 cut(s) | 512 |
| TaaI | ACNGT | 3 cut(s) | 118, 311, 778 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqI | TCGA | 1 cut(s) | 306 |
| TasI | AATT | 1 cut(s) | 327 |
| Tru1I | TTAA | 2 cut(s) | 93, 216 |
| Tru9I | TTAA | 2 cut(s) | 93, 216 |
| TscAI | CASTG | 3 cut(s) | 328, 476, 715 |
| TseFI | GTSAC | 1 cut(s) | 467 |
| TseI | GCWGC | 1 cut(s) | 155 |
| Tsp45I | GTSAC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 6 cut(s) | 78, 214, 351, 599, 636, 758 |
| TspRI | CASTG | 3 cut(s) | 328, 476, 715 |
| Vha464I | CTTAAG | 1 cut(s) | 92 |
| VneI | GTGCAC | 1 cut(s) | 698 |
| XceI | RCATGY | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 190 |
| XmiI | GTMKAC | 3 cut(s) | 113, 177, 306 |
| XmnI | GAANNNNTTC | 1 cut(s) | 86 |
| XspI | CTAG | 3 cut(s) | 452, 611, 638 |