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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 934 |
| AccB1I | GGYRCC | 4 cut(s) | 288, 1216, 1377, 2335 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2345, 3027 |
| AccI | GTMKAC | 4 cut(s) | 153, 472, 2436, 2745 |
| AccIII | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| AciI | CCGC | 3 cut(s) | 286, 1009, 2156 |
| AclWI | GGATC | 8 cut(s) | 200, 535, 1126, 1173, 2915, 2928, 3092, 3191 |
| AcoI | YGGCCR | 2 cut(s) | 2385, 2513 |
| AcsI | RAATTY | 6 cut(s) | 72, 1495, 2658, 2838, 3121, 3220 |
| AcuI | CTGAAG | 4 cut(s) | 1004, 1820, 1940, 2919 |
| AdeI | CACNNNGTG | 1 cut(s) | 2546 |
| AfaI | GTAC | 4 cut(s) | 1126, 1298, 2280, 2328 |
| AflIII | ACRYGT | 1 cut(s) | 1293 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2195, 2227 |
| AleI | CACNNNNGTG | 1 cut(s) | 2760 |
| Alw21I | GWGCWC | 2 cut(s) | 1668, 2797 |
| Alw26I | GTCTC | 4 cut(s) | 380, 626, 849, 2363 |
| AlwI | GGATC | 8 cut(s) | 200, 535, 1126, 1173, 2915, 2928, 3092, 3191 |
| Aor13HI | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| AoxI | GGCC | 2 cut(s) | 2385, 2513 |
| ApoI | RAATTY | 6 cut(s) | 72, 1495, 2658, 2838, 3121, 3220 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2907 |
| AspLEI | GCGC | 2 cut(s) | 3093, 3192 |
| AspS9I | GGNCC | 2 cut(s) | 2582, 2848 |
| AsuHPI | GGTGA | 6 cut(s) | 419, 1252, 2203, 2360, 2378, 2960 |
| AvaII | GGWCC | 2 cut(s) | 2582, 2848 |
| AxyI | CCTNAGG | 1 cut(s) | 1548 |
| BaeGI | GKGCMC | 1 cut(s) | 293 |
| BalI | TGGCCA | 1 cut(s) | 2387 |
| BamHI | GGATCC | 1 cut(s) | 2920 |
| BanI | GGYRCC | 4 cut(s) | 288, 1216, 1377, 2335 |
| BanII | GRGCYC | 1 cut(s) | 2797 |
| BbsI | GAAGAC | 1 cut(s) | 103 |
| Bbv12I | GWGCWC | 2 cut(s) | 1668, 2797 |
| BbvCI | CCTCAGC | 2 cut(s) | 1884, 2187 |
| BccI | CCATC | 7 cut(s) | 325, 385, 428, 461, 1495, 2051, 2573 |
| BceAI | ACGGC | 2 cut(s) | 73, 1775 |
| BciVI | GTATCC | 3 cut(s) | 57, 96, 1363 |
| BclI | TGATCA | 2 cut(s) | 265, 3283 |
| BcoDI | GTCTC | 4 cut(s) | 380, 626, 849, 2363 |
| BfmI | CTRYAG | 1 cut(s) | 540 |
| BfuI | GTATCC | 3 cut(s) | 57, 96, 1363 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1759 |
| Bme18I | GGWCC | 2 cut(s) | 2582, 2848 |
| BmgT120I | GGNCC | 2 cut(s) | 2582, 2848 |
| BmiI | GGNNCC | 8 cut(s) | 290, 547, 1218, 1379, 2337, 2522, 2850, 2922 |
| BmrI | ACTGGG | 1 cut(s) | 2259 |
| BmsI | GCATC | 3 cut(s) | 1195, 2244, 2479 |
| BmuI | ACTGGG | 1 cut(s) | 2259 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2504 |
| BpiI | GAAGAC | 1 cut(s) | 103 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2119, 2151 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1839, 1884, 1959, 2187 |
| BpuEI | CTTGAG | 1 cut(s) | 2462 |
| Bsa29I | ATCGAT | 1 cut(s) | 380 |
| BsaAI | YACGTR | 2 cut(s) | 1124, 1427 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1136 |
| BsaI | GGTCTC | 2 cut(s) | 380, 2363 |
| BsaJI | CCNNGG | 4 cut(s) | 307, 1030, 2140, 2516 |
| BsaWI | WCCGGW | 3 cut(s) | 1687, 3049, 3148 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1059, 1089 |
| Bse1I | ACTGG | 8 cut(s) | 351, 529, 921, 970, 1381, 1515, 2265, 2388 |
| Bse21I | CCTNAGG | 1 cut(s) | 1548 |
| Bse3DI | GCAATG | 2 cut(s) | 582, 1729 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1136 |
| BseAI | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| BseCI | ATCGAT | 1 cut(s) | 380 |
| BseDI | CCNNGG | 4 cut(s) | 307, 1030, 2140, 2516 |
| BseGI | GGATG | 8 cut(s) | 472, 952, 1210, 1302, 1321, 2494, 2565, 2599 |
| BseJI | GATNNNNATC | 1 cut(s) | 1136 |
| BseMI | GCAATG | 2 cut(s) | 582, 1729 |
| BseMII | CTCAG | 6 cut(s) | 621, 930, 1539, 1875, 2016, 2178 |
| BseNI | ACTGG | 8 cut(s) | 351, 529, 921, 970, 1381, 1515, 2265, 2388 |
| BseSI | GKGCMC | 1 cut(s) | 293 |
| BsgI | GTGCAG | 3 cut(s) | 2151, 2279, 2523 |
| Bsh1285I | CGRYCG | 1 cut(s) | 587 |
| BshFI | GGCC | 2 cut(s) | 2387, 2515 |
| BshNI | GGYRCC | 4 cut(s) | 288, 1216, 1377, 2335 |
| BshVI | ATCGAT | 1 cut(s) | 380 |
| BsiEI | CGRYCG | 1 cut(s) | 587 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1668, 2797 |
| BsiSI | CCGG | 3 cut(s) | 1688, 3050, 3149 |
| BsiWI | CGTACG | 1 cut(s) | 1124 |
| BslFI | GGGAC | 3 cut(s) | 2065, 2512, 2834 |
| BsmAI | GTCTC | 4 cut(s) | 380, 626, 849, 2363 |
| BsmFI | GGGAC | 3 cut(s) | 2065, 2512, 2834 |
| BsmI | GAATGC | 2 cut(s) | 3045, 3144 |
| BsnI | GGCC | 2 cut(s) | 2387, 2515 |
| Bso31I | GGTCTC | 2 cut(s) | 380, 2363 |
| Bsp1286I | GDGCHC | 3 cut(s) | 293, 1668, 2797 |
| Bsp13I | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| Bsp1407I | TGTACA | 1 cut(s) | 1296 |
| Bsp19I | CCATGG | 1 cut(s) | 2140 |
| BspACI | CCGC | 3 cut(s) | 286, 1009, 2156 |
| BspANI | GGCC | 2 cut(s) | 2387, 2515 |
| BspCNI | CTCAG | 6 cut(s) | 622, 931, 1540, 1876, 2017, 2179 |
| BspDI | ATCGAT | 1 cut(s) | 380 |
| BspEI | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| BspHI | TCATGA | 1 cut(s) | 1603 |
| BspLI | GGNNCC | 8 cut(s) | 290, 547, 1218, 1379, 2337, 2522, 2850, 2922 |
| BspMAI | CTGCAG | 1 cut(s) | 544 |
| BspPI | GGATC | 8 cut(s) | 200, 535, 1126, 1173, 2915, 2928, 3092, 3191 |
| BspT107I | GGYRCC | 4 cut(s) | 288, 1216, 1377, 2335 |
| BspTNI | GGTCTC | 2 cut(s) | 380, 2363 |
| BsrDI | GCAATG | 2 cut(s) | 582, 1729 |
| BsrGI | TGTACA | 1 cut(s) | 1296 |
| BsrI | ACTGG | 8 cut(s) | 351, 529, 921, 970, 1381, 1515, 2265, 2388 |
| BssECI | CCNNGG | 4 cut(s) | 307, 1030, 2140, 2516 |
| BssT1I | CCWWGG | 2 cut(s) | 307, 2140 |
| Bst4CI | ACNGT | 6 cut(s) | 1048, 1329, 2098, 2283, 2398, 2425 |
| Bst6I | CTCTTC | 4 cut(s) | 321, 1809, 2295, 2346 |
| BstAUI | TGTACA | 1 cut(s) | 1296 |
| BstBAI | YACGTR | 2 cut(s) | 1124, 1427 |
| BstC8I | GCNNGC | 2 cut(s) | 2797, 3043 |
| BstDSI | CCRYGG | 1 cut(s) | 2140 |
| BstF5I | GGATG | 8 cut(s) | 472, 952, 1210, 1302, 1321, 2494, 2565, 2599 |
| BstHHI | GCGC | 2 cut(s) | 3093, 3192 |
| BstMAI | GTCTC | 4 cut(s) | 380, 626, 849, 2363 |
| BstMCI | CGRYCG | 1 cut(s) | 587 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1225, 1439, 1759, 2162, 3302 |
| BstNSI | RCATGY | 3 cut(s) | 487, 1297, 3314 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2504 |
| BstSFI | CTRYAG | 1 cut(s) | 540 |
| BstSLI | GKGCMC | 1 cut(s) | 293 |
| BstV2I | GAAGAC | 1 cut(s) | 103 |
| BstX2I | RGATCY | 3 cut(s) | 1131, 1165, 2920 |
| BstYI | RGATCY | 3 cut(s) | 1131, 1165, 2920 |
| Bsu15I | ATCGAT | 1 cut(s) | 380 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1548 |
| BsuI | GTATCC | 3 cut(s) | 57, 96, 1363 |
| BsuRI | GGCC | 2 cut(s) | 2387, 2515 |
| BsuTUI | ATCGAT | 1 cut(s) | 380 |
| BtgI | CCRYGG | 1 cut(s) | 2140 |
| BtgZI | GCGATG | 2 cut(s) | 453, 2926 |
| BtsCI | GGATG | 8 cut(s) | 472, 952, 1210, 1302, 1321, 2494, 2565, 2599 |
| BtsIMutI | CAGTG | 4 cut(s) | 282, 1044, 2272, 2437 |
| Cac8I | GCNNGC | 2 cut(s) | 2797, 3043 |
| CciI | TCATGA | 1 cut(s) | 1603 |
| CfoI | GCGC | 2 cut(s) | 3093, 3192 |
| Cfr13I | GGNCC | 2 cut(s) | 2582, 2848 |
| ClaI | ATCGAT | 1 cut(s) | 380 |
| Csp6I | GTAC | 4 cut(s) | 1125, 1297, 2279, 2327 |
| CviQI | GTAC | 4 cut(s) | 1125, 1297, 2279, 2327 |
| DraI | TTTAAA | 1 cut(s) | 201 |
| DraIII | CACNNNGTG | 1 cut(s) | 2546 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 934 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 934 |
| EaeI | YGGCCR | 2 cut(s) | 2385, 2513 |
| Eam1104I | CTCTTC | 4 cut(s) | 321, 1809, 2295, 2346 |
| EarI | CTCTTC | 4 cut(s) | 321, 1809, 2295, 2346 |
| Ecl136II | GAGCTC | 1 cut(s) | 2795 |
| Eco130I | CCWWGG | 2 cut(s) | 307, 2140 |
| Eco24I | GRGCYC | 1 cut(s) | 2797 |
| Eco31I | GGTCTC | 2 cut(s) | 380, 2363 |
| Eco47I | GGWCC | 2 cut(s) | 2582, 2848 |
| Eco53kI | GAGCTC | 1 cut(s) | 2795 |
| Eco57I | CTGAAG | 4 cut(s) | 1004, 1820, 1940, 2919 |
| Eco81I | CCTNAGG | 1 cut(s) | 1548 |
| EcoICRI | GAGCTC | 1 cut(s) | 2795 |
| EcoT14I | CCWWGG | 2 cut(s) | 307, 2140 |
| EcoT22I | ATGCAT | 2 cut(s) | 489, 1210 |
| EcoT38I | GRGCYC | 1 cut(s) | 2797 |
| ErhI | CCWWGG | 2 cut(s) | 307, 2140 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 243, 275 |
| FaqI | GGGAC | 3 cut(s) | 2065, 2512, 2834 |
| FbaI | TGATCA | 2 cut(s) | 265, 3283 |
| FblI | GTMKAC | 4 cut(s) | 153, 472, 2436, 2745 |
| FokI | GGATG | 8 cut(s) | 479, 959, 1217, 1289, 1328, 2501, 2552, 2586 |
| FriOI | GRGCYC | 1 cut(s) | 2797 |
| GlaI | GCGC | 2 cut(s) | 3092, 3191 |
| HaeIII | GGCC | 2 cut(s) | 2387, 2515 |
| HapII | CCGG | 3 cut(s) | 1688, 3050, 3149 |
| HhaI | GCGC | 2 cut(s) | 3093, 3192 |
| Hin6I | GCGC | 2 cut(s) | 3091, 3190 |
| HinP1I | GCGC | 2 cut(s) | 3091, 3190 |
| HincII | GTYRAC | 5 cut(s) | 473, 903, 1287, 2437, 2746 |
| HindII | GTYRAC | 5 cut(s) | 473, 903, 1287, 2437, 2746 |
| HinfI | GANTC | 7 cut(s) | 131, 1193, 1600, 1684, 2078, 2890, 2937 |
| HpaI | GTTAAC | 1 cut(s) | 1287 |
| HpaII | CCGG | 3 cut(s) | 1688, 3050, 3149 |
| HphI | GGTGA | 6 cut(s) | 419, 1252, 2203, 2360, 2378, 2960 |
| Hpy166II | GTNNAC | 9 cut(s) | 85, 154, 168, 473, 903, 1287, 2437, 2746, 3265 |
| Hpy188I | TCNGA | 5 cut(s) | 507, 849, 940, 1031, 1657 |
| Hpy8I | GTNNAC | 9 cut(s) | 85, 154, 168, 473, 903, 1287, 2437, 2746, 3265 |
| HpyCH4III | ACNGT | 6 cut(s) | 1048, 1329, 2098, 2283, 2398, 2425 |
| HpyCH4IV | ACGT | 2 cut(s) | 1123, 1426 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1225, 1439, 1759, 2162, 3302 |
| HpySE526I | ACGT | 2 cut(s) | 1123, 1426 |
| HspAI | GCGC | 2 cut(s) | 3091, 3190 |
| Kpn2I | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| Ksp22I | TGATCA | 2 cut(s) | 265, 3283 |
| KspAI | GTTAAC | 1 cut(s) | 1287 |
| LmnI | GCTCC | 6 cut(s) | 425, 545, 1690, 2065, 3052, 3151 |
| LweI | GCATC | 3 cut(s) | 1195, 2244, 2479 |
| MaeII | ACGT | 2 cut(s) | 1123, 1426 |
| MaeIII | GTNAC | 4 cut(s) | 997, 1576, 2092, 2734 |
| MfeI | CAATTG | 1 cut(s) | 618 |
| MflI | RGATCY | 3 cut(s) | 1131, 1165, 2920 |
| MhlI | GDGCHC | 3 cut(s) | 293, 1668, 2797 |
| MlsI | TGGCCA | 1 cut(s) | 2387 |
| MluNI | TGGCCA | 1 cut(s) | 2387 |
| MlyI | GAGTC | 3 cut(s) | 140, 2087, 2931 |
| MmeI | TCCRAC | 2 cut(s) | 900, 2807 |
| Mox20I | TGGCCA | 1 cut(s) | 2387 |
| Mph1103I | ATGCAT | 2 cut(s) | 489, 1210 |
| MroI | TCCGGA | 3 cut(s) | 1687, 3049, 3148 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2907 |
| MscI | TGGCCA | 1 cut(s) | 2387 |
| MslI | CAYNNNNRTG | 3 cut(s) | 201, 1112, 2760 |
| Msp20I | TGGCCA | 1 cut(s) | 2387 |
| MspA1I | CMGCKG | 3 cut(s) | 755, 2670, 2897 |
| MspI | CCGG | 3 cut(s) | 1688, 3050, 3149 |
| MunI | CAATTG | 1 cut(s) | 618 |
| Mva1269I | GAATGC | 2 cut(s) | 3045, 3144 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1225, 1439, 1759, 2162, 3302 |
| NcoI | CCATGG | 1 cut(s) | 2140 |
| NlaIV | GGNNCC | 8 cut(s) | 290, 547, 1218, 1379, 2337, 2522, 2850, 2922 |
| NmeAIII | GCCGAG | 2 cut(s) | 1495, 2541 |
| NmuCI | GTSAC | 2 cut(s) | 2092, 2734 |
| NsiI | ATGCAT | 2 cut(s) | 489, 1210 |
| NspI | RCATGY | 3 cut(s) | 487, 1297, 3314 |
| OliI | CACNNNNGTG | 1 cut(s) | 2760 |
| PagI | TCATGA | 1 cut(s) | 1603 |
| PciI | ACATGT | 1 cut(s) | 1293 |
| PctI | GAATGC | 2 cut(s) | 3045, 3144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2907 |
| PfeI | GAWTC | 4 cut(s) | 1193, 1600, 1684, 2890 |
| Pfl23II | CGTACG | 1 cut(s) | 1124 |
| PflFI | GACNNNGTC | 2 cut(s) | 2732, 2878 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2345, 3027 |
| Ple19I | CGATCG | 1 cut(s) | 587 |
| PleI | GAGTC | 3 cut(s) | 139, 2086, 2931 |
| PpsI | GAGTC | 3 cut(s) | 139, 2086, 2931 |
| Ppu21I | YACGTR | 2 cut(s) | 1124, 1427 |
| PscI | ACATGT | 1 cut(s) | 1293 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2504 |
| Psp124BI | GAGCTC | 1 cut(s) | 2797 |
| PspLI | CGTACG | 1 cut(s) | 1124 |
| PspN4I | GGNNCC | 8 cut(s) | 290, 547, 1218, 1379, 2337, 2522, 2850, 2922 |
| PspPI | GGNCC | 2 cut(s) | 2582, 2848 |
| PstI | CTGCAG | 1 cut(s) | 544 |
| PsuI | RGATCY | 3 cut(s) | 1131, 1165, 2920 |
| PsyI | GACNNNGTC | 2 cut(s) | 2732, 2878 |
| PvuI | CGATCG | 1 cut(s) | 587 |
| PvuII | CAGCTG | 3 cut(s) | 755, 2670, 2897 |
| RsaI | GTAC | 4 cut(s) | 1126, 1298, 2280, 2328 |
| RsaNI | GTAC | 4 cut(s) | 1125, 1297, 2279, 2327 |
| RseI | CAYNNNNRTG | 3 cut(s) | 201, 1112, 2760 |
| SacI | GAGCTC | 1 cut(s) | 2797 |
| SalI | GTCGAC | 3 cut(s) | 471, 2435, 2744 |
| Sau96I | GGNCC | 2 cut(s) | 2582, 2848 |
| SchI | GAGTC | 3 cut(s) | 140, 2087, 2931 |
| SduI | GDGCHC | 3 cut(s) | 293, 1668, 2797 |
| SfaNI | GCATC | 3 cut(s) | 1195, 2244, 2479 |
| SfcI | CTRYAG | 1 cut(s) | 540 |
| SinI | GGWCC | 2 cut(s) | 2582, 2848 |
| SmiI | ATTTAAAT | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 201, 1112, 2760 |
| SmlI | CTYRAG | 1 cut(s) | 2441 |
| SmoI | CTYRAG | 1 cut(s) | 2441 |
| SsiI | CCGC | 3 cut(s) | 286, 1009, 2156 |
| SspI | AATATT | 1 cut(s) | 2179 |
| SstI | GAGCTC | 1 cut(s) | 2797 |
| StyI | CCWWGG | 2 cut(s) | 307, 2140 |
| SwaI | ATTTAAAT | 1 cut(s) | 201 |
| TaaI | ACNGT | 6 cut(s) | 1048, 1329, 2098, 2283, 2398, 2425 |
| TaiI | ACGT | 2 cut(s) | 1126, 1429 |
| TatI | WGTACW | 2 cut(s) | 1296, 2326 |
| TauI | GCSGC | 1 cut(s) | 1011 |
| TfiI | GAWTC | 4 cut(s) | 1193, 1600, 1684, 2890 |
| TscAI | CASTG | 4 cut(s) | 282, 1051, 2272, 2437 |
| TseFI | GTSAC | 2 cut(s) | 2092, 2734 |
| Tsp45I | GTSAC | 2 cut(s) | 2092, 2734 |
| TspGWI | ACGGA | 2 cut(s) | 198, 2913 |
| TspRI | CASTG | 4 cut(s) | 282, 1051, 2272, 2437 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2732, 2878 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2345, 3027 |
| VpaK11BI | GGWCC | 2 cut(s) | 2582, 2848 |
| XapI | RAATTY | 6 cut(s) | 72, 1495, 2658, 2838, 3121, 3220 |
| XbaI | TCTAGA | 2 cut(s) | 1168, 1342 |
| XceI | RCATGY | 3 cut(s) | 487, 1297, 3314 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 2380, 2395, 2576, 2914 |
| XmiI | GTMKAC | 4 cut(s) | 153, 472, 2436, 2745 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2907 |
| Zsp2I | ATGCAT | 2 cut(s) | 489, 1210 |