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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 354 |
| AclWI | GGATC | 4 cut(s) | 191, 204, 389, 402 |
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 206, 404 |
| AgsI | TTSAA | 1 cut(s) | 499 |
| AjiI | CACGTC | 1 cut(s) | 451 |
| AjnI | CCWGG | 2 cut(s) | 136, 205 |
| AluBI | AGCT | 1 cut(s) | 86 |
| AluI | AGCT | 1 cut(s) | 86 |
| AlwI | GGATC | 4 cut(s) | 191, 204, 389, 402 |
| Ama87I | CYCGRG | 1 cut(s) | 282 |
| AoxI | GGCC | 2 cut(s) | 139, 231 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| AspLEI | GCGC | 1 cut(s) | 372 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| AvaI | CYCGRG | 1 cut(s) | 282 |
| BamHI | GGATCC | 2 cut(s) | 196, 394 |
| BbsI | GAAGAC | 1 cut(s) | 104 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BceAI | ACGGC | 1 cut(s) | 126 |
| BciT130I | CCWGG | 2 cut(s) | 138, 207 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 2 cut(s) | 138, 207 |
| BmeT110I | CYCGRG | 1 cut(s) | 282 |
| BmgBI | CACGTC | 1 cut(s) | 451 |
| BmiI | GGNNCC | 2 cut(s) | 198, 396 |
| BmrFI | CCNGG | 2 cut(s) | 138, 207 |
| BmsI | GCATC | 1 cut(s) | 114 |
| BpiI | GAAGAC | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 1 cut(s) | 402 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 206, 404 |
| Bse3DI | GCAATG | 1 cut(s) | 349 |
| BseBI | CCWGG | 2 cut(s) | 138, 207 |
| BseDI | CCNNGG | 1 cut(s) | 402 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 206, 404 |
| BseMI | GCAATG | 1 cut(s) | 349 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| BseYI | CCCAGC | 1 cut(s) | 338 |
| BsgI | GTGCAG | 1 cut(s) | 25 |
| Bsh1285I | CGRYCG | 1 cut(s) | 478 |
| BshFI | GGCC | 2 cut(s) | 141, 233 |
| BsiEI | CGRYCG | 1 cut(s) | 478 |
| BsiHKCI | CYCGRG | 1 cut(s) | 282 |
| BslFI | GGGAC | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 206, 404 |
| BsmFI | GGGAC | 1 cut(s) | 395 |
| BsmI | GAATGC | 1 cut(s) | 356 |
| BsnI | GGCC | 2 cut(s) | 141, 233 |
| BsoBI | CYCGRG | 1 cut(s) | 282 |
| Bsp143I | GATC | 3 cut(s) | 68, 196, 394 |
| BspACI | CCGC | 1 cut(s) | 354 |
| BspANI | GGCC | 2 cut(s) | 141, 233 |
| BspCNI | CTCAG | 1 cut(s) | 332 |
| BspHI | TCATGA | 2 cut(s) | 120, 375 |
| BspLI | GGNNCC | 2 cut(s) | 198, 396 |
| BspPI | GGATC | 4 cut(s) | 191, 204, 389, 402 |
| BsrDI | GCAATG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 1 cut(s) | 402 |
| BssMI | GATC | 3 cut(s) | 68, 196, 394 |
| BssT1I | CCWWGG | 1 cut(s) | 402 |
| Bst2UI | CCWGG | 2 cut(s) | 138, 207 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 107, 184, 251, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 319 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 372 |
| BstKTI | GATC | 3 cut(s) | 71, 199, 397 |
| BstMBI | GATC | 3 cut(s) | 68, 196, 394 |
| BstMCI | CGRYCG | 1 cut(s) | 478 |
| BstNI | CCWGG | 2 cut(s) | 138, 207 |
| BstSCI | CCNGG | 2 cut(s) | 136, 205 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstV2I | GAAGAC | 1 cut(s) | 104 |
| BstX2I | RGATCY | 2 cut(s) | 196, 394 |
| BstYI | RGATCY | 2 cut(s) | 196, 394 |
| BsuRI | GGCC | 2 cut(s) | 141, 233 |
| BtrI | CACGTC | 1 cut(s) | 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 256 |
| CciI | TCATGA | 2 cut(s) | 120, 375 |
| CfoI | GCGC | 1 cut(s) | 372 |
| CviAII | CATG | 3 cut(s) | 121, 376, 391 |
| CviJI | RGCY | 5 cut(s) | 18, 86, 141, 233, 281 |
| CviKI_1 | RGCY | 5 cut(s) | 18, 86, 141, 233, 281 |
| DdeI | CTNAG | 1 cut(s) | 319 |
| DpnI | GATC | 3 cut(s) | 70, 198, 396 |
| DpnII | GATC | 3 cut(s) | 68, 196, 394 |
| DraI | TTTAAA | 1 cut(s) | 258 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 1 cut(s) | 402 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| Eco88I | CYCGRG | 1 cut(s) | 282 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 204 |
| EcoRII | CCWGG | 2 cut(s) | 136, 205 |
| EcoT14I | CCWWGG | 1 cut(s) | 402 |
| ErhI | CCWWGG | 1 cut(s) | 402 |
| FaeI | CATG | 3 cut(s) | 124, 379, 394 |
| FaqI | GGGAC | 1 cut(s) | 395 |
| FatI | CATG | 3 cut(s) | 120, 375, 390 |
| FauI | CCCGC | 1 cut(s) | 347 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| GlaI | GCGC | 1 cut(s) | 371 |
| GluI | GCNGC | 1 cut(s) | 84 |
| GsaI | CCCAGC | 1 cut(s) | 342 |
| HaeIII | GGCC | 2 cut(s) | 141, 233 |
| HhaI | GCGC | 1 cut(s) | 372 |
| Hin1II | CATG | 3 cut(s) | 124, 379, 394 |
| Hin6I | GCGC | 1 cut(s) | 370 |
| HinP1I | GCGC | 1 cut(s) | 370 |
| HinfI | GANTC | 1 cut(s) | 75 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 2 cut(s) | 110, 247 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 5 cut(s) | 72, 121, 194, 244, 376 |
| Hpy8I | GTNNAC | 2 cut(s) | 110, 247 |
| Hpy99I | CGWCG | 5 cut(s) | 455, 476, 496, 517, 536 |
| HpyAV | CCTTC | 2 cut(s) | 408, 446 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 107, 184, 251, 476 |
| HpyCH4IV | ACGT | 4 cut(s) | 292, 450, 491, 512 |
| HpyCH4V | TGCA | 1 cut(s) | 6 |
| HpyF3I | CTNAG | 1 cut(s) | 319 |
| HpySE526I | ACGT | 4 cut(s) | 292, 450, 491, 512 |
| Hsp92II | CATG | 3 cut(s) | 124, 379, 394 |
| HspAI | GCGC | 1 cut(s) | 370 |
| Kzo9I | GATC | 3 cut(s) | 68, 196, 394 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| LweI | GCATC | 1 cut(s) | 114 |
| MaeII | ACGT | 4 cut(s) | 292, 450, 491, 512 |
| MalI | GATC | 3 cut(s) | 70, 198, 396 |
| MboI | GATC | 3 cut(s) | 68, 196, 394 |
| MboII | GAAGA | 3 cut(s) | 109, 239, 438 |
| MflI | RGATCY | 2 cut(s) | 196, 394 |
| MluCI | AATT | 3 cut(s) | 303, 430, 485 |
| MlyI | GAGTC | 1 cut(s) | 69 |
| MnlI | CCTC | 3 cut(s) | 210, 223, 372 |
| MseI | TTAA | 2 cut(s) | 257, 488 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MspR9I | CCNGG | 2 cut(s) | 138, 207 |
| Mva1269I | GAATGC | 1 cut(s) | 356 |
| MvaI | CCWGG | 2 cut(s) | 138, 207 |
| NdeII | GATC | 3 cut(s) | 68, 196, 394 |
| NlaIII | CATG | 3 cut(s) | 124, 379, 394 |
| NlaIV | GGNNCC | 2 cut(s) | 198, 396 |
| PagI | TCATGA | 2 cut(s) | 120, 375 |
| PctI | GAATGC | 1 cut(s) | 356 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 69 |
| PpsI | GAGTC | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 136, 205 |
| PspFI | CCCAGC | 1 cut(s) | 338 |
| PspGI | CCWGG | 2 cut(s) | 136, 205 |
| PspN4I | GGNNCC | 2 cut(s) | 198, 396 |
| PsuI | RGATCY | 2 cut(s) | 196, 394 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SaqAI | TTAA | 2 cut(s) | 257, 488 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 3 cut(s) | 68, 196, 394 |
| SchI | GAGTC | 1 cut(s) | 69 |
| ScrFI | CCNGG | 2 cut(s) | 138, 207 |
| SetI | ASST | 7 cut(s) | 88, 295, 423, 438, 453, 494, 515 |
| SfaNI | GCATC | 1 cut(s) | 114 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| Sse9I | AATT | 3 cut(s) | 303, 430, 485 |
| SsiI | CCGC | 1 cut(s) | 354 |
| StyD4I | CCNGG | 2 cut(s) | 136, 205 |
| StyI | CCWWGG | 1 cut(s) | 402 |
| TaaI | ACNGT | 5 cut(s) | 37, 107, 184, 251, 476 |
| TaiI | ACGT | 4 cut(s) | 295, 453, 494, 515 |
| TaqI | TCGA | 4 cut(s) | 24, 88, 222, 348 |
| TasI | AATT | 3 cut(s) | 303, 430, 485 |
| Tru1I | TTAA | 2 cut(s) | 257, 488 |
| Tru9I | TTAA | 2 cut(s) | 257, 488 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 5 cut(s) | 109, 240, 364, 428, 536 |
| TspRI | CASTG | 1 cut(s) | 256 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 204 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 144 |