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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 433 |
| AccII | CGCG | 1 cut(s) | 540 |
| AccIII | TCCGGA | 1 cut(s) | 1032 |
| AciI | CCGC | 1 cut(s) | 912 |
| AclWI | GGATC | 3 cut(s) | 173, 947, 960 |
| AcsI | RAATTY | 1 cut(s) | 449 |
| AcuI | CTGAAG | 1 cut(s) | 579 |
| AcyI | GRCGYC | 1 cut(s) | 434 |
| AfaI | GTAC | 1 cut(s) | 626 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 22, 705, 1066 |
| AgsI | TTSAA | 3 cut(s) | 47, 423, 643 |
| AjnI | CCWGG | 1 cut(s) | 396 |
| AluBI | AGCT | 6 cut(s) | 6, 71, 154, 243, 599, 716 |
| AluI | AGCT | 6 cut(s) | 6, 71, 154, 243, 599, 716 |
| AlwI | GGATC | 3 cut(s) | 173, 947, 960 |
| Aor13HI | TCCGGA | 1 cut(s) | 1032 |
| AoxI | GGCC | 1 cut(s) | 847 |
| ApeKI | GCWGC | 2 cut(s) | 243, 660 |
| ApoI | RAATTY | 1 cut(s) | 449 |
| AseI | ATTAAT | 1 cut(s) | 164 |
| AspLEI | GCGC | 2 cut(s) | 436, 930 |
| AsuC2I | CCSGG | 1 cut(s) | 765 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AxyI | CCTNAGG | 1 cut(s) | 486 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 534, 567 |
| BamHI | GGATCC | 1 cut(s) | 952 |
| BanI | GGYRCC | 1 cut(s) | 433 |
| BauI | CACGAG | 1 cut(s) | 479 |
| BbvI | GCAGC | 2 cut(s) | 230, 672 |
| BccI | CCATC | 3 cut(s) | 58, 91, 445 |
| BceAI | ACGGC | 2 cut(s) | 718, 834 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 463, 497, 781, 815 |
| BciT130I | CCWGG | 1 cut(s) | 398 |
| BcnI | CCSGG | 1 cut(s) | 765 |
| BfaI | CTAG | 2 cut(s) | 105, 533 |
| BfmI | CTRYAG | 1 cut(s) | 687 |
| BfoI | RGCGCY | 1 cut(s) | 437 |
| BisI | GCNGC | 2 cut(s) | 244, 661 |
| BlsI | GCNGC | 2 cut(s) | 245, 662 |
| Bme1390I | CCNGG | 2 cut(s) | 398, 765 |
| BmiI | GGNNCC | 2 cut(s) | 435, 954 |
| BmrFI | CCNGG | 2 cut(s) | 398, 765 |
| BmsI | GCATC | 1 cut(s) | 915 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| BpuMI | CCSGG | 1 cut(s) | 765 |
| BsaBI | GATNNNNATC | 1 cut(s) | 756 |
| BsaHI | GRCGYC | 1 cut(s) | 434 |
| BsaJI | CCNNGG | 2 cut(s) | 960, 984 |
| BsaWI | WCCGGW | 1 cut(s) | 1032 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 588, 618 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 22, 705, 1066 |
| Bse21I | CCTNAGG | 1 cut(s) | 486 |
| Bse8I | GATNNNNATC | 1 cut(s) | 756 |
| BseAI | TCCGGA | 1 cut(s) | 1032 |
| BseBI | CCWGG | 1 cut(s) | 398 |
| BseDI | CCNNGG | 2 cut(s) | 960, 984 |
| BseGI | GGATG | 1 cut(s) | 102 |
| BseJI | GATNNNNATC | 1 cut(s) | 756 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 22, 705, 1066 |
| BseMII | CTCAG | 3 cut(s) | 120, 137, 500 |
| BseXI | GCAGC | 2 cut(s) | 230, 672 |
| BseYI | CCCAGC | 1 cut(s) | 896 |
| BsgI | GTGCAG | 1 cut(s) | 679 |
| Bsh1236I | CGCG | 1 cut(s) | 540 |
| Bsh1285I | CGRYCG | 1 cut(s) | 16 |
| BshFI | GGCC | 1 cut(s) | 849 |
| BshNI | GGYRCC | 1 cut(s) | 433 |
| BsiEI | CGRYCG | 1 cut(s) | 16 |
| BsiSI | CCGG | 2 cut(s) | 765, 1033 |
| BslFI | GGGAC | 1 cut(s) | 198 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 22, 705, 1066 |
| BsmFI | GGGAC | 1 cut(s) | 198 |
| BsmI | GAATGC | 1 cut(s) | 914 |
| BsnI | GGCC | 1 cut(s) | 849 |
| Bsp13I | TCCGGA | 1 cut(s) | 1032 |
| Bsp143I | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| BspACI | CCGC | 1 cut(s) | 912 |
| BspANI | GGCC | 1 cut(s) | 849 |
| BspCNI | CTCAG | 3 cut(s) | 121, 138, 499 |
| BspEI | TCCGGA | 1 cut(s) | 1032 |
| BspFNI | CGCG | 1 cut(s) | 540 |
| BspHI | TCATGA | 1 cut(s) | 933 |
| BspLI | GGNNCC | 2 cut(s) | 435, 954 |
| BspPI | GGATC | 3 cut(s) | 173, 947, 960 |
| BspT107I | GGYRCC | 1 cut(s) | 433 |
| BssECI | CCNNGG | 2 cut(s) | 960, 984 |
| BssMI | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| BssNI | GRCGYC | 1 cut(s) | 434 |
| BssSI | CACGAG | 1 cut(s) | 479 |
| BssT1I | CCWWGG | 2 cut(s) | 960, 984 |
| Bst2BI | CACGAG | 1 cut(s) | 479 |
| Bst2UI | CCWGG | 1 cut(s) | 398 |
| Bst4CI | ACNGT | 5 cut(s) | 17, 29, 604, 691, 809 |
| Bst6I | CTCTTC | 6 cut(s) | 45, 78, 276, 303, 330, 780 |
| BstACI | GRCGYC | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 3 cut(s) | 188, 241, 580 |
| BstDEI | CTNAG | 4 cut(s) | 72, 129, 146, 486 |
| BstF5I | GGATG | 1 cut(s) | 102 |
| BstFNI | CGCG | 1 cut(s) | 540 |
| BstH2I | RGCGCY | 1 cut(s) | 437 |
| BstHHI | GCGC | 2 cut(s) | 436, 930 |
| BstKTI | GATC | 5 cut(s) | 181, 637, 725, 845, 955 |
| BstMBI | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| BstMCI | CGRYCG | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 669 |
| BstNI | CCWGG | 1 cut(s) | 398 |
| BstNSI | RCATGY | 1 cut(s) | 190 |
| BstSCI | CCNGG | 2 cut(s) | 396, 763 |
| BstSFI | CTRYAG | 1 cut(s) | 687 |
| BstUI | CGCG | 1 cut(s) | 540 |
| BstV1I | GCAGC | 2 cut(s) | 230, 672 |
| BstX2I | RGATCY | 1 cut(s) | 952 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 952 |
| Bsu36I | CCTNAGG | 1 cut(s) | 486 |
| BsuRI | GGCC | 1 cut(s) | 849 |
| BtsCI | GGATG | 1 cut(s) | 102 |
| BtsI | GCAGTG | 1 cut(s) | 907 |
| BtsIMutI | CAGTG | 2 cut(s) | 814, 907 |
| Cac8I | GCNNGC | 3 cut(s) | 188, 241, 580 |
| CciI | TCATGA | 1 cut(s) | 933 |
| CfoI | GCGC | 2 cut(s) | 436, 930 |
| CsiI | ACCWGGT | 1 cut(s) | 396 |
| Csp6I | GTAC | 1 cut(s) | 625 |
| CviAII | CATG | 8 cut(s) | 187, 389, 583, 632, 664, 934, 949, 1066 |
| CviQI | GTAC | 1 cut(s) | 625 |
| DdeI | CTNAG | 4 cut(s) | 72, 129, 146, 486 |
| DinI | GGCGCC | 1 cut(s) | 435 |
| DpnI | GATC | 5 cut(s) | 180, 636, 724, 844, 954 |
| DpnII | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| DraI | TTTAAA | 2 cut(s) | 21, 447 |
| Eam1104I | CTCTTC | 6 cut(s) | 45, 78, 276, 303, 330, 780 |
| EarI | CTCTTC | 6 cut(s) | 45, 78, 276, 303, 330, 780 |
| Eco130I | CCWWGG | 2 cut(s) | 960, 984 |
| Eco57I | CTGAAG | 1 cut(s) | 579 |
| Eco81I | CCTNAGG | 1 cut(s) | 486 |
| EcoRII | CCWGG | 1 cut(s) | 396 |
| EcoT14I | CCWWGG | 2 cut(s) | 960, 984 |
| EgeI | GGCGCC | 1 cut(s) | 435 |
| EheI | GGCGCC | 1 cut(s) | 435 |
| ErhI | CCWWGG | 2 cut(s) | 960, 984 |
| FaeI | CATG | 8 cut(s) | 190, 392, 586, 635, 667, 937, 952, 1069 |
| FaqI | GGGAC | 1 cut(s) | 198 |
| FatI | CATG | 8 cut(s) | 186, 388, 582, 631, 663, 933, 948, 1065 |
| FauI | CCCGC | 1 cut(s) | 905 |
| Fnu4HI | GCNGC | 2 cut(s) | 244, 661 |
| FokI | GGATG | 1 cut(s) | 109 |
| Fsp4HI | GCNGC | 2 cut(s) | 244, 661 |
| FspBI | CTAG | 2 cut(s) | 105, 533 |
| GlaI | GCGC | 2 cut(s) | 435, 929 |
| GluI | GCNGC | 2 cut(s) | 244, 661 |
| GsaI | CCCAGC | 1 cut(s) | 900 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 1 cut(s) | 437 |
| HaeIII | GGCC | 1 cut(s) | 849 |
| HapII | CCGG | 2 cut(s) | 765, 1033 |
| HhaI | GCGC | 2 cut(s) | 436, 930 |
| Hin1I | GRCGYC | 1 cut(s) | 434 |
| Hin1II | CATG | 8 cut(s) | 190, 392, 586, 635, 667, 937, 952, 1069 |
| Hin6I | GCGC | 2 cut(s) | 434, 928 |
| HinP1I | GCGC | 2 cut(s) | 434, 928 |
| HinfI | GANTC | 1 cut(s) | 148 |
| HpaII | CCGG | 2 cut(s) | 765, 1033 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 1 cut(s) | 805 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy8I | GTNNAC | 1 cut(s) | 805 |
| HpyAV | CCTTC | 6 cut(s) | 53, 260, 307, 556, 966, 1070 |
| HpyCH4III | ACNGT | 5 cut(s) | 17, 29, 604, 691, 809 |
| HpyCH4V | TGCA | 2 cut(s) | 578, 660 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 669 |
| HpyF3I | CTNAG | 4 cut(s) | 72, 129, 146, 486 |
| Hsp92I | GRCGYC | 1 cut(s) | 434 |
| Hsp92II | CATG | 8 cut(s) | 190, 392, 586, 635, 667, 937, 952, 1069 |
| HspAI | GCGC | 2 cut(s) | 434, 928 |
| KasI | GGCGCC | 1 cut(s) | 433 |
| Kpn2I | TCCGGA | 1 cut(s) | 1032 |
| Kzo9I | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| LmnI | GCTCC | 2 cut(s) | 136, 596 |
| Lsp1109I | GCAGC | 2 cut(s) | 230, 672 |
| LweI | GCATC | 1 cut(s) | 915 |
| MabI | ACCWGGT | 1 cut(s) | 396 |
| MaeI | CTAG | 2 cut(s) | 105, 533 |
| MaeIII | GTNAC | 1 cut(s) | 938 |
| MalI | GATC | 5 cut(s) | 180, 636, 724, 844, 954 |
| MboI | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| MfeI | CAATTG | 3 cut(s) | 116, 510, 1020 |
| MflI | RGATCY | 1 cut(s) | 952 |
| Mly113I | GGCGCC | 1 cut(s) | 434 |
| MlyI | GAGTC | 1 cut(s) | 157 |
| MroI | TCCGGA | 1 cut(s) | 1032 |
| MseI | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 405, 446 |
| MslI | CAYNNNNRTG | 1 cut(s) | 947 |
| MspI | CCGG | 2 cut(s) | 765, 1033 |
| MspR9I | CCNGG | 2 cut(s) | 398, 765 |
| MunI | CAATTG | 3 cut(s) | 116, 510, 1020 |
| Mva1269I | GAATGC | 1 cut(s) | 914 |
| MvaI | CCWGG | 1 cut(s) | 398 |
| MvnI | CGCG | 1 cut(s) | 540 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 669 |
| NarI | GGCGCC | 1 cut(s) | 434 |
| NciI | CCSGG | 1 cut(s) | 765 |
| NdeII | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| NlaIII | CATG | 8 cut(s) | 190, 392, 586, 635, 667, 937, 952, 1069 |
| NlaIV | GGNNCC | 2 cut(s) | 435, 954 |
| NmuCI | GTSAC | 1 cut(s) | 938 |
| NspI | RCATGY | 1 cut(s) | 190 |
| PaeI | GCATGC | 1 cut(s) | 190 |
| PagI | TCATGA | 1 cut(s) | 933 |
| PctI | GAATGC | 1 cut(s) | 914 |
| PkrI | GCNGC | 2 cut(s) | 245, 662 |
| PleI | GAGTC | 1 cut(s) | 156 |
| PluTI | GGCGCC | 1 cut(s) | 437 |
| PpsI | GAGTC | 1 cut(s) | 156 |
| PshBI | ATTAAT | 1 cut(s) | 164 |
| Psp6I | CCWGG | 1 cut(s) | 396 |
| PspFI | CCCAGC | 1 cut(s) | 896 |
| PspGI | CCWGG | 1 cut(s) | 396 |
| PspN4I | GGNNCC | 2 cut(s) | 435, 954 |
| PsuI | RGATCY | 1 cut(s) | 952 |
| RsaI | GTAC | 1 cut(s) | 626 |
| RsaNI | GTAC | 1 cut(s) | 625 |
| RseI | CAYNNNNRTG | 1 cut(s) | 947 |
| SaqAI | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 405, 446 |
| SatI | GCNGC | 2 cut(s) | 244, 661 |
| Sau3AI | GATC | 5 cut(s) | 178, 634, 722, 842, 952 |
| SchI | GAGTC | 1 cut(s) | 157 |
| ScrFI | CCNGG | 2 cut(s) | 398, 765 |
| SexAI | ACCWGGT | 1 cut(s) | 396 |
| SfaNI | GCATC | 1 cut(s) | 915 |
| SfcI | CTRYAG | 1 cut(s) | 687 |
| SfoI | GGCGCC | 1 cut(s) | 435 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 947 |
| SphI | GCATGC | 1 cut(s) | 190 |
| SsiI | CCGC | 1 cut(s) | 912 |
| SspDI | GGCGCC | 1 cut(s) | 433 |
| SspMI | CTAG | 2 cut(s) | 105, 533 |
| StyD4I | CCNGG | 2 cut(s) | 396, 763 |
| StyI | CCWWGG | 2 cut(s) | 960, 984 |
| TaaI | ACNGT | 5 cut(s) | 17, 29, 604, 691, 809 |
| TaqI | TCGA | 3 cut(s) | 678, 780, 906 |
| Tru1I | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 405, 446 |
| Tru9I | TTAA | 7 cut(s) | 20, 32, 92, 164, 192, 405, 446 |
| TscAI | CASTG | 2 cut(s) | 814, 907 |
| TseFI | GTSAC | 1 cut(s) | 938 |
| TseI | GCWGC | 2 cut(s) | 243, 660 |
| Tsp45I | GTSAC | 1 cut(s) | 938 |
| TspRI | CASTG | 2 cut(s) | 814, 907 |
| VspI | ATTAAT | 1 cut(s) | 164 |
| XapI | RAATTY | 1 cut(s) | 449 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XceI | RCATGY | 1 cut(s) | 190 |
| XspI | CTAG | 2 cut(s) | 105, 533 |