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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 746 |
| Acc65I | GGTACC | 1 cut(s) | 801 |
| AccB1I | GGYRCC | 1 cut(s) | 801 |
| AciI | CCGC | 2 cut(s) | 368, 1042 |
| AclWI | GGATC | 4 cut(s) | 897, 995, 1025, 1038 |
| AcoI | YGGCCR | 1 cut(s) | 491 |
| AcsI | RAATTY | 2 cut(s) | 619, 1144 |
| AcuI | CTGAAG | 1 cut(s) | 717 |
| AfaI | GTAC | 3 cut(s) | 258, 558, 803 |
| AgsI | TTSAA | 3 cut(s) | 123, 661, 686 |
| AjiI | CACGTC | 1 cut(s) | 742 |
| AjnI | CCWGG | 2 cut(s) | 894, 940 |
| AleI | CACNNNNGTG | 1 cut(s) | 326 |
| AluBI | AGCT | 5 cut(s) | 74, 178, 314, 502, 608 |
| AluI | AGCT | 5 cut(s) | 74, 178, 314, 502, 608 |
| Alw21I | GWGCWC | 1 cut(s) | 715 |
| Alw26I | GTCTC | 2 cut(s) | 24, 403 |
| Alw44I | GTGCAC | 1 cut(s) | 711 |
| AlwI | GGATC | 4 cut(s) | 897, 995, 1025, 1038 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 401 |
| AoxI | GGCC | 5 cut(s) | 276, 468, 491, 892, 1120 |
| ApaLI | GTGCAC | 1 cut(s) | 711 |
| ApeKI | GCWGC | 3 cut(s) | 605, 958, 1173 |
| ApoI | RAATTY | 2 cut(s) | 619, 1144 |
| Asp718I | GGTACC | 1 cut(s) | 801 |
| AspLEI | GCGC | 1 cut(s) | 747 |
| AsuHPI | GGTGA | 3 cut(s) | 455, 659, 670 |
| BaeGI | GKGCMC | 1 cut(s) | 715 |
| BamHI | GGATCC | 1 cut(s) | 1030 |
| BanI | GGYRCC | 1 cut(s) | 801 |
| BbsI | GAAGAC | 1 cut(s) | 570 |
| Bbv12I | GWGCWC | 1 cut(s) | 715 |
| BbvI | GCAGC | 3 cut(s) | 617, 945, 1185 |
| BccI | CCATC | 3 cut(s) | 47, 134, 659 |
| BciT130I | CCWGG | 2 cut(s) | 896, 942 |
| BclI | TGATCA | 2 cut(s) | 217, 301 |
| BcoDI | GTCTC | 2 cut(s) | 24, 403 |
| BfaI | CTAG | 3 cut(s) | 371, 731, 1170 |
| BisI | GCNGC | 4 cut(s) | 606, 959, 1043, 1174 |
| BlpI | GCTNAGC | 1 cut(s) | 179 |
| BlsI | GCNGC | 4 cut(s) | 607, 960, 1044, 1175 |
| Bme1390I | CCNGG | 2 cut(s) | 896, 942 |
| BmgBI | CACGTC | 1 cut(s) | 742 |
| BmiI | GGNNCC | 2 cut(s) | 803, 1032 |
| BmrFI | CCNGG | 2 cut(s) | 896, 942 |
| BoxI | GACNNNNGTC | 1 cut(s) | 995 |
| BpiI | GAAGAC | 1 cut(s) | 570 |
| BpmI | CTGGAG | 1 cut(s) | 1077 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 179 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 21, 51, 1050, 1080 |
| Bse1I | ACTGG | 2 cut(s) | 778, 1060 |
| BseBI | CCWGG | 2 cut(s) | 896, 942 |
| BseGI | GGATG | 5 cut(s) | 58, 110, 178, 586, 636 |
| BseMII | CTCAG | 5 cut(s) | 258, 522, 567, 809, 984 |
| BseNI | ACTGG | 2 cut(s) | 778, 1060 |
| BseRI | GAGGAG | 3 cut(s) | 428, 553, 1152 |
| BseSI | GKGCMC | 1 cut(s) | 715 |
| BseXI | GCAGC | 3 cut(s) | 617, 945, 1185 |
| BshFI | GGCC | 5 cut(s) | 278, 470, 493, 894, 1122 |
| BshNI | GGYRCC | 1 cut(s) | 801 |
| BsiHKAI | GWGCWC | 1 cut(s) | 715 |
| BslFI | GGGAC | 1 cut(s) | 246 |
| BsmAI | GTCTC | 2 cut(s) | 24, 403 |
| BsmBI | CGTCTC | 1 cut(s) | 24 |
| BsmFI | GGGAC | 1 cut(s) | 246 |
| BsmI | GAATGC | 1 cut(s) | 424 |
| BsnI | GGCC | 5 cut(s) | 278, 470, 493, 894, 1122 |
| Bsp1286I | GDGCHC | 1 cut(s) | 715 |
| Bsp143I | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 179 |
| BspACI | CCGC | 2 cut(s) | 368, 1042 |
| BspANI | GGCC | 5 cut(s) | 278, 470, 493, 894, 1122 |
| BspCNI | CTCAG | 5 cut(s) | 259, 523, 568, 810, 983 |
| BspLI | GGNNCC | 2 cut(s) | 803, 1032 |
| BspPI | GGATC | 4 cut(s) | 897, 995, 1025, 1038 |
| BspT107I | GGYRCC | 1 cut(s) | 801 |
| BsrI | ACTGG | 2 cut(s) | 778, 1060 |
| BssMI | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| Bst2UI | CCWGG | 2 cut(s) | 896, 942 |
| Bst4CI | ACNGT | 2 cut(s) | 325, 460 |
| Bst6I | CTCTTC | 1 cut(s) | 530 |
| BstC8I | GCNNGC | 2 cut(s) | 468, 711 |
| BstDEI | CTNAG | 7 cut(s) | 179, 267, 424, 531, 576, 818, 970 |
| BstF5I | GGATG | 5 cut(s) | 58, 110, 178, 586, 636 |
| BstHHI | GCGC | 1 cut(s) | 747 |
| BstKTI | GATC | 6 cut(s) | 220, 304, 571, 905, 1003, 1033 |
| BstMAI | GTCTC | 2 cut(s) | 24, 403 |
| BstMBI | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 284, 499, 1119 |
| BstNI | CCWGG | 2 cut(s) | 896, 942 |
| BstNSI | RCATGY | 1 cut(s) | 643 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 995 |
| BstSCI | CCNGG | 2 cut(s) | 894, 940 |
| BstSLI | GKGCMC | 1 cut(s) | 715 |
| BstV1I | GCAGC | 3 cut(s) | 617, 945, 1185 |
| BstV2I | GAAGAC | 1 cut(s) | 570 |
| BstX2I | RGATCY | 2 cut(s) | 902, 1030 |
| BstYI | RGATCY | 2 cut(s) | 902, 1030 |
| BsuRI | GGCC | 5 cut(s) | 278, 470, 493, 894, 1122 |
| BtgZI | GCGATG | 1 cut(s) | 878 |
| BtrI | CACGTC | 1 cut(s) | 742 |
| BtsCI | GGATG | 5 cut(s) | 58, 110, 178, 586, 636 |
| BtsIMutI | CAGTG | 2 cut(s) | 321, 1053 |
| Cac8I | GCNNGC | 2 cut(s) | 468, 711 |
| CaiI | CAGNNNCTG | 1 cut(s) | 401 |
| CfoI | GCGC | 1 cut(s) | 747 |
| Csp6I | GTAC | 3 cut(s) | 257, 557, 802 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1165, 1200 |
| CviAII | CATG | 8 cut(s) | 221, 359, 489, 640, 760, 955, 1093, 1198 |
| CviQI | GTAC | 3 cut(s) | 257, 557, 802 |
| DdeI | CTNAG | 7 cut(s) | 179, 267, 424, 531, 576, 818, 970 |
| DpnI | GATC | 6 cut(s) | 219, 303, 570, 904, 1002, 1032 |
| DpnII | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| EaeI | YGGCCR | 1 cut(s) | 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 530 |
| EarI | CTCTTC | 1 cut(s) | 530 |
| Eco32I | GATATC | 1 cut(s) | 930 |
| Eco57I | CTGAAG | 1 cut(s) | 717 |
| EcoRII | CCWGG | 2 cut(s) | 894, 940 |
| EcoRV | GATATC | 1 cut(s) | 930 |
| Esp3I | CGTCTC | 1 cut(s) | 24 |
| FaeI | CATG | 8 cut(s) | 224, 362, 492, 643, 763, 958, 1096, 1201 |
| FaqI | GGGAC | 1 cut(s) | 246 |
| FatI | CATG | 8 cut(s) | 220, 358, 488, 639, 759, 954, 1092, 1197 |
| FbaI | TGATCA | 2 cut(s) | 217, 301 |
| Fnu4HI | GCNGC | 4 cut(s) | 606, 959, 1043, 1174 |
| FokI | GGATG | 5 cut(s) | 65, 117, 185, 593, 643 |
| Fsp4HI | GCNGC | 4 cut(s) | 606, 959, 1043, 1174 |
| FspBI | CTAG | 3 cut(s) | 371, 731, 1170 |
| FspI | TGCGCA | 1 cut(s) | 746 |
| GlaI | GCGC | 1 cut(s) | 746 |
| GluI | GCNGC | 4 cut(s) | 606, 959, 1043, 1174 |
| GsuI | CTGGAG | 1 cut(s) | 1077 |
| HaeIII | GGCC | 5 cut(s) | 278, 470, 493, 894, 1122 |
| HhaI | GCGC | 1 cut(s) | 747 |
| Hin1II | CATG | 8 cut(s) | 224, 362, 492, 643, 763, 958, 1096, 1201 |
| Hin6I | GCGC | 1 cut(s) | 745 |
| HinP1I | GCGC | 1 cut(s) | 745 |
| HinfI | GANTC | 2 cut(s) | 657, 820 |
| HphI | GGTGA | 3 cut(s) | 455, 659, 670 |
| Hpy166II | GTNNAC | 1 cut(s) | 713 |
| Hpy188I | TCNGA | 2 cut(s) | 577, 973 |
| Hpy188III | TCNNGA | 2 cut(s) | 817, 1004 |
| Hpy8I | GTNNAC | 1 cut(s) | 713 |
| HpyAV | CCTTC | 2 cut(s) | 124, 664 |
| HpyCH4III | ACNGT | 2 cut(s) | 325, 460 |
| HpyCH4IV | ACGT | 1 cut(s) | 741 |
| HpyCH4V | TGCA | 9 cut(s) | 407, 639, 713, 755, 783, 875, 935, 1085, 1103 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 284, 499, 1119 |
| HpyF3I | CTNAG | 7 cut(s) | 179, 267, 424, 531, 576, 818, 970 |
| HpySE526I | ACGT | 1 cut(s) | 741 |
| Hsp92II | CATG | 8 cut(s) | 224, 362, 492, 643, 763, 958, 1096, 1201 |
| HspAI | GCGC | 1 cut(s) | 745 |
| KpnI | GGTACC | 1 cut(s) | 805 |
| Ksp22I | TGATCA | 2 cut(s) | 217, 301 |
| Kzo9I | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| Lsp1109I | GCAGC | 3 cut(s) | 617, 945, 1185 |
| MaeI | CTAG | 3 cut(s) | 371, 731, 1170 |
| MaeII | ACGT | 1 cut(s) | 741 |
| MaeIII | GTNAC | 2 cut(s) | 191, 776 |
| MalI | GATC | 6 cut(s) | 219, 303, 570, 904, 1002, 1032 |
| MboI | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| MboII | GAAGA | 3 cut(s) | 535, 547, 575 |
| MfeI | CAATTG | 2 cut(s) | 408, 876 |
| MflI | RGATCY | 2 cut(s) | 902, 1030 |
| MhlI | GDGCHC | 1 cut(s) | 715 |
| MlyI | GAGTC | 1 cut(s) | 829 |
| MmeI | TCCRAC | 5 cut(s) | 30, 180, 223, 634, 816 |
| MseI | TTAA | 2 cut(s) | 41, 852 |
| MslI | CAYNNNNRTG | 1 cut(s) | 326 |
| MspR9I | CCNGG | 2 cut(s) | 896, 942 |
| MunI | CAATTG | 2 cut(s) | 408, 876 |
| Mva1269I | GAATGC | 1 cut(s) | 424 |
| MvaI | CCWGG | 2 cut(s) | 896, 942 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 284, 499, 1119 |
| NdeII | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| NlaIII | CATG | 8 cut(s) | 224, 362, 492, 643, 763, 958, 1096, 1201 |
| NlaIV | GGNNCC | 2 cut(s) | 803, 1032 |
| NmuCI | GTSAC | 1 cut(s) | 191 |
| NsbI | TGCGCA | 1 cut(s) | 746 |
| NspI | RCATGY | 1 cut(s) | 643 |
| OliI | CACNNNNGTG | 1 cut(s) | 326 |
| PctI | GAATGC | 1 cut(s) | 424 |
| PfeI | GAWTC | 1 cut(s) | 657 |
| PkrI | GCNGC | 4 cut(s) | 607, 960, 1044, 1175 |
| PleI | GAGTC | 1 cut(s) | 828 |
| PpsI | GAGTC | 1 cut(s) | 828 |
| PshAI | GACNNNNGTC | 1 cut(s) | 995 |
| Psp6I | CCWGG | 2 cut(s) | 894, 940 |
| PspGI | CCWGG | 2 cut(s) | 894, 940 |
| PspN4I | GGNNCC | 2 cut(s) | 803, 1032 |
| PstNI | CAGNNNCTG | 1 cut(s) | 401 |
| PsuI | RGATCY | 2 cut(s) | 902, 1030 |
| RsaI | GTAC | 3 cut(s) | 258, 558, 803 |
| RsaNI | GTAC | 3 cut(s) | 257, 557, 802 |
| RseI | CAYNNNNRTG | 1 cut(s) | 326 |
| SaqAI | TTAA | 2 cut(s) | 41, 852 |
| SatI | GCNGC | 4 cut(s) | 606, 959, 1043, 1174 |
| Sau3AI | GATC | 6 cut(s) | 217, 301, 568, 902, 1000, 1030 |
| SchI | GAGTC | 1 cut(s) | 829 |
| ScrFI | CCNGG | 2 cut(s) | 896, 942 |
| SduI | GDGCHC | 1 cut(s) | 715 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 326 |
| SsiI | CCGC | 2 cut(s) | 368, 1042 |
| SspMI | CTAG | 3 cut(s) | 371, 731, 1170 |
| StyD4I | CCNGG | 2 cut(s) | 894, 940 |
| TaaI | ACNGT | 2 cut(s) | 325, 460 |
| TaiI | ACGT | 1 cut(s) | 744 |
| TaqI | TCGA | 2 cut(s) | 13, 999 |
| TauI | GCSGC | 1 cut(s) | 1045 |
| TfiI | GAWTC | 1 cut(s) | 657 |
| Tru1I | TTAA | 2 cut(s) | 41, 852 |
| Tru9I | TTAA | 2 cut(s) | 41, 852 |
| TscAI | CASTG | 2 cut(s) | 328, 1060 |
| TseFI | GTSAC | 1 cut(s) | 191 |
| TseI | GCWGC | 3 cut(s) | 605, 958, 1173 |
| Tsp45I | GTSAC | 1 cut(s) | 191 |
| TspDTI | ATGAA | 5 cut(s) | 462, 600, 612, 943, 1052 |
| TspGWI | ACGGA | 1 cut(s) | 730 |
| TspRI | CASTG | 2 cut(s) | 328, 1060 |
| VneI | GTGCAC | 1 cut(s) | 711 |
| XapI | RAATTY | 2 cut(s) | 619, 1144 |
| XceI | RCATGY | 1 cut(s) | 643 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 356 |
| XspI | CTAG | 3 cut(s) | 371, 731, 1170 |