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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| AciI | CCGC | 1 cut(s) | 320 |
| AclWI | GGATC | 1 cut(s) | 7 |
| AcsI | RAATTY | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 22, 62 |
| AflII | CTTAAG | 1 cut(s) | 323 |
| AgsI | TTSAA | 1 cut(s) | 358 |
| AjnI | CCWGG | 1 cut(s) | 21 |
| AluBI | AGCT | 3 cut(s) | 75, 466, 522 |
| AluI | AGCT | 3 cut(s) | 75, 466, 522 |
| Alw21I | GWGCWC | 1 cut(s) | 338 |
| AlwI | GGATC | 1 cut(s) | 7 |
| ApeKI | GCWGC | 1 cut(s) | 522 |
| ApoI | RAATTY | 1 cut(s) | 66 |
| AspS9I | GGNCC | 1 cut(s) | 53 |
| AvaII | GGWCC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 1 cut(s) | 338 |
| BbvI | GCAGC | 1 cut(s) | 509 |
| BccI | CCATC | 1 cut(s) | 356 |
| BciT130I | CCWGG | 1 cut(s) | 23 |
| BciVI | GTATCC | 1 cut(s) | 250 |
| BclI | TGATCA | 1 cut(s) | 277 |
| BfrI | CTTAAG | 1 cut(s) | 323 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BfuI | GTATCC | 1 cut(s) | 250 |
| BisI | GCNGC | 1 cut(s) | 523 |
| BlsI | GCNGC | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 1 cut(s) | 23 |
| Bme18I | GGWCC | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 1 cut(s) | 53 |
| BmrFI | CCNGG | 1 cut(s) | 23 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 22, 62 |
| BseBI | CCWGG | 1 cut(s) | 23 |
| BseGI | GGATG | 2 cut(s) | 367, 442 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 22, 62 |
| BseRI | GAGGAG | 1 cut(s) | 256 |
| BseXI | GCAGC | 1 cut(s) | 509 |
| BsiHKAI | GWGCWC | 1 cut(s) | 338 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 22, 62 |
| Bsp1286I | GDGCHC | 1 cut(s) | 338 |
| Bsp143I | GATC | 2 cut(s) | 12, 277 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspHI | TCATGA | 1 cut(s) | 280 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BspPI | GGATC | 1 cut(s) | 7 |
| BspTI | CTTAAG | 1 cut(s) | 323 |
| BssMI | GATC | 2 cut(s) | 12, 277 |
| Bst2UI | CCWGG | 1 cut(s) | 23 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 479 |
| BstAFI | CTTAAG | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 1 cut(s) | 218 |
| BstF5I | GGATG | 2 cut(s) | 367, 442 |
| BstKTI | GATC | 2 cut(s) | 15, 280 |
| BstMBI | GATC | 2 cut(s) | 12, 277 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 319 |
| BstNI | CCWGG | 1 cut(s) | 23 |
| BstSCI | CCNGG | 1 cut(s) | 21 |
| BstV1I | GCAGC | 1 cut(s) | 509 |
| BstX2I | RGATCY | 1 cut(s) | 12 |
| BstYI | RGATCY | 1 cut(s) | 12 |
| BsuI | GTATCC | 1 cut(s) | 250 |
| BtsCI | GGATG | 2 cut(s) | 367, 442 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 1 cut(s) | 218 |
| CciI | TCATGA | 1 cut(s) | 280 |
| Cfr13I | GGNCC | 1 cut(s) | 53 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 291, 326 |
| CviAII | CATG | 5 cut(s) | 263, 281, 339, 448, 457 |
| CviJI | RGCY | 6 cut(s) | 48, 75, 142, 344, 466, 522 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 75, 142, 344, 466, 522 |
| DpnI | GATC | 2 cut(s) | 14, 279 |
| DpnII | GATC | 2 cut(s) | 12, 277 |
| DraI | TTTAAA | 1 cut(s) | 514 |
| Eco32I | GATATC | 1 cut(s) | 407 |
| Eco47I | GGWCC | 1 cut(s) | 53 |
| EcoRII | CCWGG | 1 cut(s) | 21 |
| EcoRV | GATATC | 1 cut(s) | 407 |
| EcoT22I | ATGCAT | 1 cut(s) | 510 |
| FaeI | CATG | 5 cut(s) | 266, 284, 342, 451, 460 |
| FatI | CATG | 5 cut(s) | 262, 280, 338, 447, 456 |
| FbaI | TGATCA | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 1 cut(s) | 523 |
| FokI | GGATG | 2 cut(s) | 374, 449 |
| Fsp4HI | GCNGC | 1 cut(s) | 523 |
| GluI | GCNGC | 1 cut(s) | 523 |
| Hin1II | CATG | 5 cut(s) | 266, 284, 342, 451, 460 |
| Hpy188I | TCNGA | 2 cut(s) | 404, 431 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 183, 281 |
| HpyAV | CCTTC | 4 cut(s) | 247, 352, 426, 454 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 479 |
| HpyCH4V | TGCA | 2 cut(s) | 161, 508 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 319 |
| Hsp92II | CATG | 5 cut(s) | 266, 284, 342, 451, 460 |
| Ksp22I | TGATCA | 1 cut(s) | 277 |
| Kzo9I | GATC | 2 cut(s) | 12, 277 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| LpnPI | CCDG | 4 cut(s) | 8, 35, 171, 311 |
| Lsp1109I | GCAGC | 1 cut(s) | 509 |
| MaeIII | GTNAC | 3 cut(s) | 94, 121, 367 |
| MalI | GATC | 2 cut(s) | 14, 279 |
| MboI | GATC | 2 cut(s) | 12, 277 |
| MflI | RGATCY | 1 cut(s) | 12 |
| MhlI | GDGCHC | 1 cut(s) | 338 |
| MluCI | AATT | 6 cut(s) | 66, 107, 234, 307, 395, 515 |
| MnlI | CCTC | 9 cut(s) | 19, 56, 74, 83, 234, 237, 324, 385, 489 |
| Mph1103I | ATGCAT | 1 cut(s) | 510 |
| MseI | TTAA | 3 cut(s) | 324, 513, 518 |
| MspCI | CTTAAG | 1 cut(s) | 323 |
| MspR9I | CCNGG | 1 cut(s) | 23 |
| MvaI | CCWGG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 319 |
| NdeII | GATC | 2 cut(s) | 12, 277 |
| NlaIII | CATG | 5 cut(s) | 266, 284, 342, 451, 460 |
| NmuCI | GTSAC | 1 cut(s) | 94 |
| NsiI | ATGCAT | 1 cut(s) | 510 |
| PagI | TCATGA | 1 cut(s) | 280 |
| PfoI | TCCNGGA | 1 cut(s) | 21 |
| PkrI | GCNGC | 1 cut(s) | 524 |
| Psp6I | CCWGG | 1 cut(s) | 21 |
| PspGI | CCWGG | 1 cut(s) | 21 |
| PspPI | GGNCC | 1 cut(s) | 53 |
| PsuI | RGATCY | 1 cut(s) | 12 |
| SaqAI | TTAA | 3 cut(s) | 324, 513, 518 |
| SatI | GCNGC | 1 cut(s) | 523 |
| Sau3AI | GATC | 2 cut(s) | 12, 277 |
| Sau96I | GGNCC | 1 cut(s) | 53 |
| ScrFI | CCNGG | 1 cut(s) | 23 |
| SduI | GDGCHC | 1 cut(s) | 338 |
| SetI | ASST | 7 cut(s) | 43, 77, 300, 420, 468, 500, 524 |
| SinI | GGWCC | 1 cut(s) | 53 |
| SmlI | CTYRAG | 1 cut(s) | 323 |
| SmoI | CTYRAG | 1 cut(s) | 323 |
| Sse9I | AATT | 6 cut(s) | 66, 107, 234, 307, 395, 515 |
| SsiI | CCGC | 1 cut(s) | 320 |
| StyD4I | CCNGG | 1 cut(s) | 21 |
| TaaI | ACNGT | 2 cut(s) | 37, 479 |
| TaqI | TCGA | 1 cut(s) | 184 |
| TasI | AATT | 6 cut(s) | 66, 107, 234, 307, 395, 515 |
| Tru1I | TTAA | 3 cut(s) | 324, 513, 518 |
| Tru9I | TTAA | 3 cut(s) | 324, 513, 518 |
| TseFI | GTSAC | 1 cut(s) | 94 |
| TseI | GCWGC | 1 cut(s) | 522 |
| Tsp45I | GTSAC | 1 cut(s) | 94 |
| TspDTI | ATGAA | 1 cut(s) | 473 |
| TspGWI | ACGGA | 1 cut(s) | 5 |
| Vha464I | CTTAAG | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 1 cut(s) | 53 |
| XapI | RAATTY | 1 cut(s) | 66 |
| Zsp2I | ATGCAT | 1 cut(s) | 510 |