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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 735 |
| AccB1I | GGYRCC | 1 cut(s) | 247 |
| AccII | CGCG | 1 cut(s) | 354 |
| AccIII | TCCGGA | 1 cut(s) | 942 |
| AciI | CCGC | 1 cut(s) | 822 |
| AclWI | GGATC | 5 cut(s) | 626, 659, 672, 857, 870 |
| AcsI | RAATTY | 1 cut(s) | 729 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AcyI | GRCGYC | 1 cut(s) | 248 |
| AfaI | GTAC | 1 cut(s) | 440 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 115, 674, 976 |
| AgsI | TTSAA | 5 cut(s) | 73, 140, 237, 457, 563 |
| AjnI | CCWGG | 3 cut(s) | 22, 604, 975 |
| AluBI | AGCT | 5 cut(s) | 99, 164, 413, 530, 554 |
| AluI | AGCT | 5 cut(s) | 99, 164, 413, 530, 554 |
| AlwI | GGATC | 5 cut(s) | 626, 659, 672, 857, 870 |
| Ama87I | CYCGRG | 1 cut(s) | 14 |
| Aor13HI | TCCGGA | 1 cut(s) | 942 |
| AoxI | GGCC | 4 cut(s) | 10, 607, 699, 757 |
| ApaI | GGGCCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 2 cut(s) | 474, 551 |
| ApoI | RAATTY | 1 cut(s) | 729 |
| AspLEI | GCGC | 2 cut(s) | 250, 840 |
| AspS9I | GGNCC | 2 cut(s) | 10, 11 |
| AsuC2I | CCSGG | 1 cut(s) | 675 |
| AsuHPI | GGTGA | 2 cut(s) | 587, 965 |
| AvaI | CYCGRG | 1 cut(s) | 14 |
| AxyI | CCTNAGG | 1 cut(s) | 300 |
| BaeGI | GKGCMC | 1 cut(s) | 14 |
| BamHI | GGATCC | 2 cut(s) | 664, 862 |
| BanI | GGYRCC | 1 cut(s) | 247 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| BauI | CACGAG | 1 cut(s) | 293 |
| BbvI | GCAGC | 2 cut(s) | 486, 563 |
| BccI | CCATC | 2 cut(s) | 184, 259 |
| BceAI | ACGGC | 2 cut(s) | 594, 744 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 277, 311 |
| BciT130I | CCWGG | 3 cut(s) | 24, 606, 977 |
| BcnI | CCSGG | 1 cut(s) | 675 |
| BfaI | CTAG | 2 cut(s) | 198, 347 |
| BfmI | CTRYAG | 1 cut(s) | 501 |
| BfoI | RGCGCY | 1 cut(s) | 251 |
| BisI | GCNGC | 2 cut(s) | 475, 552 |
| BlsI | GCNGC | 2 cut(s) | 476, 553 |
| Bme1390I | CCNGG | 4 cut(s) | 24, 606, 675, 977 |
| BmeT110I | CYCGRG | 1 cut(s) | 14 |
| BmgT120I | GGNCC | 2 cut(s) | 10, 11 |
| BmiI | GGNNCC | 5 cut(s) | 12, 13, 249, 666, 864 |
| BmrFI | CCNGG | 4 cut(s) | 24, 606, 675, 977 |
| BmsI | GCATC | 3 cut(s) | 28, 582, 825 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BpuMI | CCSGG | 1 cut(s) | 675 |
| BsaHI | GRCGYC | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 3 cut(s) | 59, 870, 894 |
| BsaWI | WCCGGW | 1 cut(s) | 942 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 402, 432 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 115, 674, 976 |
| Bse1I | ACTGG | 1 cut(s) | 549 |
| Bse21I | CCTNAGG | 1 cut(s) | 300 |
| Bse3DI | GCAATG | 1 cut(s) | 420 |
| BseAI | TCCGGA | 1 cut(s) | 942 |
| BseBI | CCWGG | 3 cut(s) | 24, 606, 977 |
| BseDI | CCNNGG | 3 cut(s) | 59, 870, 894 |
| BseGI | GGATG | 3 cut(s) | 19, 99, 195 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 115, 674, 976 |
| BseMI | GCAATG | 1 cut(s) | 420 |
| BseMII | CTCAG | 1 cut(s) | 314 |
| BseNI | ACTGG | 1 cut(s) | 549 |
| BseSI | GKGCMC | 1 cut(s) | 14 |
| BseXI | GCAGC | 2 cut(s) | 486, 563 |
| BseYI | CCCAGC | 2 cut(s) | 47, 806 |
| BsgI | GTGCAG | 1 cut(s) | 493 |
| Bsh1236I | CGCG | 1 cut(s) | 354 |
| Bsh1285I | CGRYCG | 1 cut(s) | 109 |
| BshFI | GGCC | 4 cut(s) | 12, 609, 701, 759 |
| BshNI | GGYRCC | 1 cut(s) | 247 |
| BsiEI | CGRYCG | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 1 cut(s) | 14 |
| BsiSI | CCGG | 2 cut(s) | 675, 943 |
| BslFI | GGGAC | 1 cut(s) | 863 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 115, 674, 976 |
| BsmFI | GGGAC | 1 cut(s) | 863 |
| BsmI | GAATGC | 1 cut(s) | 824 |
| BsnI | GGCC | 4 cut(s) | 12, 609, 701, 759 |
| BsoBI | CYCGRG | 1 cut(s) | 14 |
| Bsp120I | GGGCCC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp13I | TCCGGA | 1 cut(s) | 942 |
| Bsp143I | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| BspACI | CCGC | 1 cut(s) | 822 |
| BspANI | GGCC | 4 cut(s) | 12, 609, 701, 759 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspEI | TCCGGA | 1 cut(s) | 942 |
| BspFNI | CGCG | 1 cut(s) | 354 |
| BspHI | TCATGA | 2 cut(s) | 588, 843 |
| BspLI | GGNNCC | 5 cut(s) | 12, 13, 249, 666, 864 |
| BspPI | GGATC | 5 cut(s) | 626, 659, 672, 857, 870 |
| BspT107I | GGYRCC | 1 cut(s) | 247 |
| BsrDI | GCAATG | 1 cut(s) | 420 |
| BsrI | ACTGG | 1 cut(s) | 549 |
| BssECI | CCNNGG | 3 cut(s) | 59, 870, 894 |
| BssMI | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| BssNI | GRCGYC | 1 cut(s) | 248 |
| BssSI | CACGAG | 1 cut(s) | 293 |
| BssT1I | CCWWGG | 3 cut(s) | 59, 870, 894 |
| Bst2BI | CACGAG | 1 cut(s) | 293 |
| Bst2UI | CCWGG | 3 cut(s) | 24, 606, 977 |
| Bst4CI | ACNGT | 7 cut(s) | 110, 122, 418, 505, 575, 652, 719 |
| Bst6I | CTCTTC | 3 cut(s) | 138, 171, 690 |
| BstACI | GRCGYC | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 1 cut(s) | 394 |
| BstDEI | CTNAG | 2 cut(s) | 165, 300 |
| BstF5I | GGATG | 3 cut(s) | 19, 99, 195 |
| BstFNI | CGCG | 1 cut(s) | 354 |
| BstH2I | RGCGCY | 1 cut(s) | 251 |
| BstHHI | GCGC | 2 cut(s) | 250, 840 |
| BstKTI | GATC | 6 cut(s) | 451, 539, 621, 667, 755, 865 |
| BstMBI | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| BstMCI | CGRYCG | 1 cut(s) | 109 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 483 |
| BstNI | CCWGG | 3 cut(s) | 24, 606, 977 |
| BstSCI | CCNGG | 4 cut(s) | 22, 604, 673, 975 |
| BstSFI | CTRYAG | 1 cut(s) | 501 |
| BstSLI | GKGCMC | 1 cut(s) | 14 |
| BstUI | CGCG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 2 cut(s) | 486, 563 |
| BstX2I | RGATCY | 3 cut(s) | 618, 664, 862 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 211 |
| BstYI | RGATCY | 3 cut(s) | 618, 664, 862 |
| Bsu36I | CCTNAGG | 1 cut(s) | 300 |
| BsuRI | GGCC | 4 cut(s) | 12, 609, 701, 759 |
| BtsCI | GGATG | 3 cut(s) | 19, 99, 195 |
| BtsI | GCAGTG | 1 cut(s) | 817 |
| BtsIMutI | CAGTG | 2 cut(s) | 724, 817 |
| Cac8I | GCNNGC | 1 cut(s) | 394 |
| CciI | TCATGA | 2 cut(s) | 588, 843 |
| CfoI | GCGC | 2 cut(s) | 250, 840 |
| Cfr13I | GGNCC | 2 cut(s) | 10, 11 |
| CseI | GACGC | 1 cut(s) | 900 |
| Csp6I | GTAC | 1 cut(s) | 439 |
| CviAII | CATG | 6 cut(s) | 157, 397, 478, 589, 844, 859 |
| CviQI | GTAC | 1 cut(s) | 439 |
| DdeI | CTNAG | 2 cut(s) | 165, 300 |
| DinI | GGCGCC | 1 cut(s) | 249 |
| DpnI | GATC | 6 cut(s) | 450, 538, 620, 666, 754, 864 |
| DpnII | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| DraI | TTTAAA | 2 cut(s) | 114, 261 |
| Eam1104I | CTCTTC | 3 cut(s) | 138, 171, 690 |
| EarI | CTCTTC | 3 cut(s) | 138, 171, 690 |
| Eco130I | CCWWGG | 3 cut(s) | 59, 870, 894 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| Eco81I | CCTNAGG | 1 cut(s) | 300 |
| Eco88I | CYCGRG | 1 cut(s) | 14 |
| EcoO109I | RGGNCCY | 1 cut(s) | 11 |
| EcoRII | CCWGG | 3 cut(s) | 22, 604, 975 |
| EcoT14I | CCWWGG | 3 cut(s) | 59, 870, 894 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| EgeI | GGCGCC | 1 cut(s) | 249 |
| EheI | GGCGCC | 1 cut(s) | 249 |
| ErhI | CCWWGG | 3 cut(s) | 59, 870, 894 |
| FaeI | CATG | 6 cut(s) | 160, 400, 481, 592, 847, 862 |
| FaqI | GGGAC | 1 cut(s) | 863 |
| FatI | CATG | 6 cut(s) | 156, 396, 477, 588, 843, 858 |
| FauI | CCCGC | 1 cut(s) | 815 |
| Fnu4HI | GCNGC | 2 cut(s) | 475, 552 |
| FokI | GGATG | 3 cut(s) | 6, 106, 202 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 2 cut(s) | 475, 552 |
| FspBI | CTAG | 2 cut(s) | 198, 347 |
| GlaI | GCGC | 2 cut(s) | 249, 839 |
| GluI | GCNGC | 2 cut(s) | 475, 552 |
| GsaI | CCCAGC | 2 cut(s) | 51, 810 |
| HaeII | RGCGCY | 1 cut(s) | 251 |
| HaeIII | GGCC | 4 cut(s) | 12, 609, 701, 759 |
| HapII | CCGG | 2 cut(s) | 675, 943 |
| HgaI | GACGC | 1 cut(s) | 900 |
| HhaI | GCGC | 2 cut(s) | 250, 840 |
| Hin1I | GRCGYC | 1 cut(s) | 248 |
| Hin1II | CATG | 6 cut(s) | 160, 400, 481, 592, 847, 862 |
| Hin6I | GCGC | 2 cut(s) | 248, 838 |
| HinP1I | GCGC | 2 cut(s) | 248, 838 |
| HpaII | CCGG | 2 cut(s) | 675, 943 |
| HphI | GGTGA | 2 cut(s) | 587, 965 |
| Hpy166II | GTNNAC | 2 cut(s) | 578, 715 |
| Hpy188III | TCNNGA | 9 cut(s) | 140, 302, 347, 540, 589, 662, 712, 844, 943 |
| Hpy8I | GTNNAC | 2 cut(s) | 578, 715 |
| HpyAV | CCTTC | 4 cut(s) | 146, 370, 876, 980 |
| HpyCH4III | ACNGT | 7 cut(s) | 110, 122, 418, 505, 575, 652, 719 |
| HpyCH4V | TGCA | 2 cut(s) | 392, 474 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 483 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 300 |
| Hsp92I | GRCGYC | 1 cut(s) | 248 |
| Hsp92II | CATG | 6 cut(s) | 160, 400, 481, 592, 847, 862 |
| HspAI | GCGC | 2 cut(s) | 248, 838 |
| KasI | GGCGCC | 1 cut(s) | 247 |
| Kpn2I | TCCGGA | 1 cut(s) | 942 |
| Kzo9I | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| LmnI | GCTCC | 1 cut(s) | 410 |
| Lsp1109I | GCAGC | 2 cut(s) | 486, 563 |
| LweI | GCATC | 3 cut(s) | 28, 582, 825 |
| MaeI | CTAG | 2 cut(s) | 198, 347 |
| MalI | GATC | 6 cut(s) | 450, 538, 620, 666, 754, 864 |
| MboI | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| MboII | GAAGA | 7 cut(s) | 155, 188, 246, 386, 413, 707, 895 |
| MfeI | CAATTG | 3 cut(s) | 209, 324, 930 |
| MflI | RGATCY | 3 cut(s) | 618, 664, 862 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| MluCI | AATT | 8 cut(s) | 73, 209, 324, 386, 729, 736, 771, 930 |
| Mly113I | GGCGCC | 1 cut(s) | 248 |
| MroI | TCCGGA | 1 cut(s) | 942 |
| MseI | TTAA | 5 cut(s) | 113, 125, 185, 219, 260 |
| MslI | CAYNNNNRTG | 1 cut(s) | 857 |
| MspI | CCGG | 2 cut(s) | 675, 943 |
| MspR9I | CCNGG | 4 cut(s) | 24, 606, 675, 977 |
| MunI | CAATTG | 3 cut(s) | 209, 324, 930 |
| Mva1269I | GAATGC | 1 cut(s) | 824 |
| MvaI | CCWGG | 3 cut(s) | 24, 606, 977 |
| MvnI | CGCG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 483 |
| NarI | GGCGCC | 1 cut(s) | 248 |
| NciI | CCSGG | 1 cut(s) | 675 |
| NdeII | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| NlaIII | CATG | 6 cut(s) | 160, 400, 481, 592, 847, 862 |
| NlaIV | GGNNCC | 5 cut(s) | 12, 13, 249, 666, 864 |
| PagI | TCATGA | 2 cut(s) | 588, 843 |
| PctI | GAATGC | 1 cut(s) | 824 |
| PkrI | GCNGC | 2 cut(s) | 476, 553 |
| PluTI | GGCGCC | 1 cut(s) | 251 |
| PsiI | TTATAA | 1 cut(s) | 735 |
| Psp6I | CCWGG | 3 cut(s) | 22, 604, 975 |
| PspFI | CCCAGC | 2 cut(s) | 47, 806 |
| PspGI | CCWGG | 3 cut(s) | 22, 604, 975 |
| PspN4I | GGNNCC | 5 cut(s) | 12, 13, 249, 666, 864 |
| PspOMI | GGGCCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 2 cut(s) | 10, 11 |
| PsuI | RGATCY | 3 cut(s) | 618, 664, 862 |
| RsaI | GTAC | 1 cut(s) | 440 |
| RsaNI | GTAC | 1 cut(s) | 439 |
| RseI | CAYNNNNRTG | 1 cut(s) | 857 |
| SaqAI | TTAA | 5 cut(s) | 113, 125, 185, 219, 260 |
| SatI | GCNGC | 2 cut(s) | 475, 552 |
| Sau3AI | GATC | 6 cut(s) | 448, 536, 618, 664, 752, 862 |
| Sau96I | GGNCC | 2 cut(s) | 10, 11 |
| ScrFI | CCNGG | 4 cut(s) | 24, 606, 675, 977 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 3 cut(s) | 28, 582, 825 |
| SfcI | CTRYAG | 1 cut(s) | 501 |
| SfoI | GGCGCC | 1 cut(s) | 249 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 857 |
| Sse9I | AATT | 8 cut(s) | 73, 209, 324, 386, 729, 736, 771, 930 |
| SsiI | CCGC | 1 cut(s) | 822 |
| SspDI | GGCGCC | 1 cut(s) | 247 |
| SspI | AATATT | 1 cut(s) | 68 |
| SspMI | CTAG | 2 cut(s) | 198, 347 |
| StyD4I | CCNGG | 4 cut(s) | 22, 604, 673, 975 |
| StyI | CCWWGG | 3 cut(s) | 59, 870, 894 |
| TaaI | ACNGT | 7 cut(s) | 110, 122, 418, 505, 575, 652, 719 |
| TaqI | TCGA | 4 cut(s) | 492, 556, 690, 816 |
| TasI | AATT | 8 cut(s) | 73, 209, 324, 386, 729, 736, 771, 930 |
| Tru1I | TTAA | 5 cut(s) | 113, 125, 185, 219, 260 |
| Tru9I | TTAA | 5 cut(s) | 113, 125, 185, 219, 260 |
| TscAI | CASTG | 2 cut(s) | 724, 817 |
| TseI | GCWGC | 2 cut(s) | 474, 551 |
| TspDTI | ATGAA | 5 cut(s) | 577, 708, 832, 951, 963 |
| TspRI | CASTG | 2 cut(s) | 724, 817 |
| XapI | RAATTY | 1 cut(s) | 729 |
| XbaI | TCTAGA | 1 cut(s) | 346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 612 |
| XspI | CTAG | 2 cut(s) | 198, 347 |