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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 488, 1307 |
| AciI | CCGC | 1 cut(s) | 1407 |
| AclWI | GGATC | 4 cut(s) | 44, 1026, 1460, 1473 |
| AcoI | YGGCCR | 3 cut(s) | 454, 1037, 1378 |
| AcsI | RAATTY | 1 cut(s) | 472 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AcvI | CACGTG | 1 cut(s) | 1343 |
| AfaI | GTAC | 2 cut(s) | 627, 822 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1066 |
| AgsI | TTSAA | 4 cut(s) | 278, 471, 1255, 1474 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1030 |
| AjiI | CACGTC | 1 cut(s) | 47 |
| AjnI | CCWGG | 1 cut(s) | 908 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1122, 1154, 1321, 1353, 1466, 1498 |
| AluBI | AGCT | 5 cut(s) | 236, 772, 842, 1215, 1352 |
| AluI | AGCT | 5 cut(s) | 236, 772, 842, 1215, 1352 |
| Alw26I | GTCTC | 1 cut(s) | 83 |
| AlwI | GGATC | 4 cut(s) | 44, 1026, 1460, 1473 |
| AoxI | GGCC | 4 cut(s) | 454, 911, 1037, 1378 |
| ApeKI | GCWGC | 3 cut(s) | 236, 950, 1215 |
| ApoI | RAATTY | 1 cut(s) | 472 |
| AseI | ATTAAT | 3 cut(s) | 513, 582, 1179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 466 |
| AspLEI | GCGC | 2 cut(s) | 155, 261 |
| AsuHPI | GGTGA | 2 cut(s) | 671, 806 |
| BalI | TGGCCA | 3 cut(s) | 456, 1039, 1380 |
| BamHI | GGATCC | 1 cut(s) | 1465 |
| BanI | GGYRCC | 2 cut(s) | 488, 1307 |
| BanII | GRGCYC | 1 cut(s) | 1414 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1471, 1503 |
| BbrPI | CACGTG | 1 cut(s) | 1343 |
| BbsI | GAAGAC | 2 cut(s) | 1112, 1452 |
| BbvCI | CCTCAGC | 1 cut(s) | 129 |
| BbvI | GCAGC | 3 cut(s) | 223, 962, 1202 |
| BccI | CCATC | 5 cut(s) | 386, 608, 940, 1232, 1261 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BciT130I | CCWGG | 1 cut(s) | 910 |
| BciVI | GTATCC | 1 cut(s) | 794 |
| BcoDI | GTCTC | 1 cut(s) | 83 |
| BfaI | CTAG | 2 cut(s) | 198, 479 |
| BfmI | CTRYAG | 4 cut(s) | 78, 1296, 1347, 1488 |
| BfoI | RGCGCY | 1 cut(s) | 262 |
| BfuI | GTATCC | 1 cut(s) | 794 |
| BglII | AGATCT | 1 cut(s) | 870 |
| BisI | GCNGC | 3 cut(s) | 237, 951, 1216 |
| BlsI | GCNGC | 3 cut(s) | 238, 952, 1217 |
| Bme1390I | CCNGG | 1 cut(s) | 910 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1030 |
| BmgBI | CACGTC | 1 cut(s) | 47 |
| BmiI | GGNNCC | 3 cut(s) | 490, 1309, 1467 |
| BmrFI | CCNGG | 1 cut(s) | 910 |
| BmsI | GCATC | 4 cut(s) | 556, 877, 1064, 1410 |
| BpiI | GAAGAC | 2 cut(s) | 1112, 1452 |
| Bpu10I | CCTNAGC | 1 cut(s) | 129 |
| Bsa29I | ATCGAT | 1 cut(s) | 815 |
| BsaAI | YACGTR | 1 cut(s) | 1343 |
| BsaJI | CCNNGG | 3 cut(s) | 429, 457, 778 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 210, 240, 350, 380 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1066 |
| Bse3DI | GCAATG | 1 cut(s) | 526 |
| BseBI | CCWGG | 1 cut(s) | 910 |
| BseCI | ATCGAT | 1 cut(s) | 815 |
| BseDI | CCNNGG | 3 cut(s) | 429, 457, 778 |
| BseGI | GGATG | 6 cut(s) | 10, 619, 841, 1055, 1365, 1425 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1066 |
| BseMI | GCAATG | 1 cut(s) | 526 |
| BseMII | CTCAG | 4 cut(s) | 120, 284, 597, 930 |
| BseRI | GAGGAG | 6 cut(s) | 101, 225, 374, 385, 1025, 1028 |
| BseXI | GCAGC | 3 cut(s) | 223, 962, 1202 |
| BsgI | GTGCAG | 2 cut(s) | 519, 1102 |
| BshFI | GGCC | 4 cut(s) | 456, 913, 1039, 1380 |
| BshNI | GGYRCC | 2 cut(s) | 488, 1307 |
| BshVI | ATCGAT | 1 cut(s) | 815 |
| BslFI | GGGAC | 1 cut(s) | 910 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1066 |
| BsmAI | GTCTC | 1 cut(s) | 83 |
| BsmBI | CGTCTC | 1 cut(s) | 83 |
| BsmFI | GGGAC | 1 cut(s) | 910 |
| BsmI | GAATGC | 1 cut(s) | 403 |
| BsnI | GGCC | 4 cut(s) | 456, 913, 1039, 1380 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1414 |
| Bsp143I | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| Bsp19I | CCATGG | 1 cut(s) | 778 |
| BspACI | CCGC | 1 cut(s) | 1407 |
| BspANI | GGCC | 4 cut(s) | 456, 913, 1039, 1380 |
| BspCNI | CTCAG | 4 cut(s) | 121, 285, 598, 931 |
| BspDI | ATCGAT | 1 cut(s) | 815 |
| BspHI | TCATGA | 2 cut(s) | 187, 1441 |
| BspLI | GGNNCC | 3 cut(s) | 490, 1309, 1467 |
| BspPI | GGATC | 4 cut(s) | 44, 1026, 1460, 1473 |
| BspT107I | GGYRCC | 2 cut(s) | 488, 1307 |
| BsrDI | GCAATG | 1 cut(s) | 526 |
| BssECI | CCNNGG | 3 cut(s) | 429, 457, 778 |
| BssMI | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| BssT1I | CCWWGG | 2 cut(s) | 457, 778 |
| Bst2UI | CCWGG | 1 cut(s) | 910 |
| Bst4CI | ACNGT | 4 cut(s) | 286, 433, 880, 1429 |
| Bst6I | CTCTTC | 1 cut(s) | 1469 |
| BstBAI | YACGTR | 1 cut(s) | 1343 |
| BstC8I | GCNNGC | 2 cut(s) | 234, 770 |
| BstDEI | CTNAG | 4 cut(s) | 129, 293, 606, 939 |
| BstDSI | CCRYGG | 2 cut(s) | 429, 778 |
| BstF5I | GGATG | 6 cut(s) | 10, 619, 841, 1055, 1365, 1425 |
| BstH2I | RGCGCY | 1 cut(s) | 262 |
| BstHHI | GCGC | 2 cut(s) | 155, 261 |
| BstKTI | GATC | 6 cut(s) | 22, 39, 827, 873, 1021, 1468 |
| BstMAI | GTCTC | 1 cut(s) | 83 |
| BstMBI | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 150, 497, 1036 |
| BstNI | CCWGG | 1 cut(s) | 910 |
| BstNSI | RCATGY | 3 cut(s) | 197, 1030, 1078 |
| BstSCI | CCNGG | 1 cut(s) | 908 |
| BstSFI | CTRYAG | 4 cut(s) | 78, 1296, 1347, 1488 |
| BstV1I | GCAGC | 3 cut(s) | 223, 962, 1202 |
| BstV2I | GAAGAC | 2 cut(s) | 1112, 1452 |
| BstX2I | RGATCY | 3 cut(s) | 870, 1018, 1465 |
| BstYI | RGATCY | 3 cut(s) | 870, 1018, 1465 |
| Bsu15I | ATCGAT | 1 cut(s) | 815 |
| BsuI | GTATCC | 1 cut(s) | 794 |
| BsuRI | GGCC | 4 cut(s) | 456, 913, 1039, 1380 |
| BsuTUI | ATCGAT | 1 cut(s) | 815 |
| BtgI | CCRYGG | 2 cut(s) | 429, 778 |
| BtrI | CACGTC | 1 cut(s) | 47 |
| BtsCI | GGATG | 6 cut(s) | 10, 619, 841, 1055, 1365, 1425 |
| Cac8I | GCNNGC | 2 cut(s) | 234, 770 |
| CciI | TCATGA | 2 cut(s) | 187, 1441 |
| CfoI | GCGC | 2 cut(s) | 155, 261 |
| ClaI | ATCGAT | 1 cut(s) | 815 |
| Csp6I | GTAC | 2 cut(s) | 626, 821 |
| CviQI | GTAC | 2 cut(s) | 626, 821 |
| DdeI | CTNAG | 4 cut(s) | 129, 293, 606, 939 |
| DpnI | GATC | 6 cut(s) | 21, 38, 826, 872, 1020, 1467 |
| DpnII | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| DraI | TTTAAA | 1 cut(s) | 70 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1030 |
| EaeI | YGGCCR | 3 cut(s) | 454, 1037, 1378 |
| Eam1104I | CTCTTC | 1 cut(s) | 1469 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1030 |
| EarI | CTCTTC | 1 cut(s) | 1469 |
| Eco130I | CCWWGG | 2 cut(s) | 457, 778 |
| Eco24I | GRGCYC | 1 cut(s) | 1414 |
| Eco32I | GATATC | 1 cut(s) | 649 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| Eco72I | CACGTG | 1 cut(s) | 1343 |
| EcoRII | CCWGG | 1 cut(s) | 908 |
| EcoRV | GATATC | 1 cut(s) | 649 |
| EcoT14I | CCWWGG | 2 cut(s) | 457, 778 |
| EcoT22I | ATGCAT | 1 cut(s) | 1076 |
| EcoT38I | GRGCYC | 1 cut(s) | 1414 |
| ErhI | CCWWGG | 2 cut(s) | 457, 778 |
| Esp3I | CGTCTC | 1 cut(s) | 83 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 831, 863 |
| FaqI | GGGAC | 1 cut(s) | 910 |
| FauI | CCCGC | 1 cut(s) | 1400 |
| FauNDI | CATATG | 1 cut(s) | 901 |
| Fnu4HI | GCNGC | 3 cut(s) | 237, 951, 1216 |
| FokI | GGATG | 6 cut(s) | 17, 626, 848, 1042, 1372, 1432 |
| FriOI | GRGCYC | 1 cut(s) | 1414 |
| Fsp4HI | GCNGC | 3 cut(s) | 237, 951, 1216 |
| FspBI | CTAG | 2 cut(s) | 198, 479 |
| GlaI | GCGC | 2 cut(s) | 154, 260 |
| GluI | GCNGC | 3 cut(s) | 237, 951, 1216 |
| HaeII | RGCGCY | 1 cut(s) | 262 |
| HaeIII | GGCC | 4 cut(s) | 456, 913, 1039, 1380 |
| HhaI | GCGC | 2 cut(s) | 155, 261 |
| Hin6I | GCGC | 2 cut(s) | 153, 259 |
| HinP1I | GCGC | 2 cut(s) | 153, 259 |
| HincII | GTYRAC | 2 cut(s) | 168, 436 |
| HindII | GTYRAC | 2 cut(s) | 168, 436 |
| HindIII | AAGCTT | 1 cut(s) | 840 |
| HinfI | GANTC | 6 cut(s) | 8, 74, 184, 413, 574, 588 |
| HphI | GGTGA | 2 cut(s) | 671, 806 |
| Hpy166II | GTNNAC | 5 cut(s) | 168, 436, 1340, 1456, 1513 |
| Hpy188I | TCNGA | 2 cut(s) | 303, 936 |
| Hpy188III | TCNNGA | 7 cut(s) | 50, 188, 874, 884, 895, 1022, 1442 |
| Hpy8I | GTNNAC | 5 cut(s) | 168, 436, 1340, 1456, 1513 |
| HpyAV | CCTTC | 8 cut(s) | 181, 478, 604, 740, 986, 1165, 1192, 1495 |
| HpyCH4III | ACNGT | 4 cut(s) | 286, 433, 880, 1429 |
| HpyCH4IV | ACGT | 2 cut(s) | 46, 1342 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 150, 497, 1036 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 293, 606, 939 |
| HpySE526I | ACGT | 2 cut(s) | 46, 1342 |
| HspAI | GCGC | 2 cut(s) | 153, 259 |
| Kzo9I | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| Lsp1109I | GCAGC | 3 cut(s) | 223, 962, 1202 |
| LweI | GCATC | 4 cut(s) | 556, 877, 1064, 1410 |
| MaeI | CTAG | 2 cut(s) | 198, 479 |
| MaeII | ACGT | 2 cut(s) | 46, 1342 |
| MalI | GATC | 6 cut(s) | 21, 38, 826, 872, 1020, 1467 |
| MboI | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| MfeI | CAATTG | 1 cut(s) | 1329 |
| MflI | RGATCY | 3 cut(s) | 870, 1018, 1465 |
| MhlI | GDGCHC | 1 cut(s) | 1414 |
| MlsI | TGGCCA | 3 cut(s) | 456, 1039, 1380 |
| MluCI | AATT | 9 cut(s) | 102, 110, 472, 678, 695, 738, 927, 1110, 1329 |
| MluNI | TGGCCA | 3 cut(s) | 456, 1039, 1380 |
| MlyI | GAGTC | 2 cut(s) | 407, 582 |
| MmeI | TCCRAC | 2 cut(s) | 959, 1261 |
| Mox20I | TGGCCA | 3 cut(s) | 456, 1039, 1380 |
| Mph1103I | ATGCAT | 1 cut(s) | 1076 |
| MroXI | GAANNNNTTC | 1 cut(s) | 466 |
| MscI | TGGCCA | 3 cut(s) | 456, 1039, 1380 |
| MseI | TTAA | 8 cut(s) | 69, 113, 246, 513, 582, 1062, 1164, 1179 |
| MslI | CAYNNNNRTG | 2 cut(s) | 192, 582 |
| Msp20I | TGGCCA | 3 cut(s) | 456, 1039, 1380 |
| MspR9I | CCNGG | 1 cut(s) | 910 |
| MunI | CAATTG | 1 cut(s) | 1329 |
| Mva1269I | GAATGC | 1 cut(s) | 403 |
| MvaI | CCWGG | 1 cut(s) | 910 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 150, 497, 1036 |
| NcoI | CCATGG | 1 cut(s) | 778 |
| NdeI | CATATG | 1 cut(s) | 901 |
| NdeII | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| NlaIV | GGNNCC | 3 cut(s) | 490, 1309, 1467 |
| NmeAIII | GCCGAG | 1 cut(s) | 1002 |
| NsiI | ATGCAT | 1 cut(s) | 1076 |
| NspI | RCATGY | 3 cut(s) | 197, 1030, 1078 |
| PagI | TCATGA | 2 cut(s) | 187, 1441 |
| PctI | GAATGC | 1 cut(s) | 403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 466 |
| PfeI | GAWTC | 4 cut(s) | 8, 74, 184, 574 |
| PkrI | GCNGC | 3 cut(s) | 238, 952, 1217 |
| PleI | GAGTC | 2 cut(s) | 407, 582 |
| PmaCI | CACGTG | 1 cut(s) | 1343 |
| PmlI | CACGTG | 1 cut(s) | 1343 |
| PpsI | GAGTC | 2 cut(s) | 407, 582 |
| Ppu21I | YACGTR | 1 cut(s) | 1343 |
| PshBI | ATTAAT | 3 cut(s) | 513, 582, 1179 |
| Psp6I | CCWGG | 1 cut(s) | 908 |
| PspCI | CACGTG | 1 cut(s) | 1343 |
| PspGI | CCWGG | 1 cut(s) | 908 |
| PspN4I | GGNNCC | 3 cut(s) | 490, 1309, 1467 |
| PsuI | RGATCY | 3 cut(s) | 870, 1018, 1465 |
| RsaI | GTAC | 2 cut(s) | 627, 822 |
| RsaNI | GTAC | 2 cut(s) | 626, 821 |
| RseI | CAYNNNNRTG | 2 cut(s) | 192, 582 |
| SaqAI | TTAA | 8 cut(s) | 69, 113, 246, 513, 582, 1062, 1164, 1179 |
| SatI | GCNGC | 3 cut(s) | 237, 951, 1216 |
| Sau3AI | GATC | 6 cut(s) | 19, 36, 824, 870, 1018, 1465 |
| SchI | GAGTC | 2 cut(s) | 407, 582 |
| ScrFI | CCNGG | 1 cut(s) | 910 |
| SduI | GDGCHC | 1 cut(s) | 1414 |
| SfaNI | GCATC | 4 cut(s) | 556, 877, 1064, 1410 |
| SfcI | CTRYAG | 4 cut(s) | 78, 1296, 1347, 1488 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 192, 582 |
| Sse9I | AATT | 9 cut(s) | 102, 110, 472, 678, 695, 738, 927, 1110, 1329 |
| SsiI | CCGC | 1 cut(s) | 1407 |
| SspI | AATATT | 1 cut(s) | 805 |
| SspMI | CTAG | 2 cut(s) | 198, 479 |
| StyD4I | CCNGG | 1 cut(s) | 908 |
| StyI | CCWWGG | 2 cut(s) | 457, 778 |
| TaaI | ACNGT | 4 cut(s) | 286, 433, 880, 1429 |
| TaiI | ACGT | 2 cut(s) | 49, 1345 |
| TaqI | TCGA | 3 cut(s) | 815, 1151, 1272 |
| TasI | AATT | 9 cut(s) | 102, 110, 472, 678, 695, 738, 927, 1110, 1329 |
| TfiI | GAWTC | 4 cut(s) | 8, 74, 184, 574 |
| Tru1I | TTAA | 8 cut(s) | 69, 113, 246, 513, 582, 1062, 1164, 1179 |
| Tru9I | TTAA | 8 cut(s) | 69, 113, 246, 513, 582, 1062, 1164, 1179 |
| TseI | GCWGC | 3 cut(s) | 236, 950, 1215 |
| TspGWI | ACGGA | 1 cut(s) | 569 |
| VspI | ATTAAT | 3 cut(s) | 513, 582, 1179 |
| XapI | RAATTY | 1 cut(s) | 472 |
| XceI | RCATGY | 3 cut(s) | 197, 1030, 1078 |
| XmnI | GAANNNNTTC | 1 cut(s) | 466 |
| XspI | CTAG | 2 cut(s) | 198, 479 |
| Zsp2I | ATGCAT | 1 cut(s) | 1076 |