source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 70 | 5.1e-15 | Transposase-associated domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 674 |
| AccB1I | GGYRCC | 1 cut(s) | 583 |
| AccI | GTMKAC | 1 cut(s) | 729 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 1 cut(s) | 757 |
| AclWI | GGATC | 1 cut(s) | 319 |
| AcoI | YGGCCR | 1 cut(s) | 236 |
| AcsI | RAATTY | 3 cut(s) | 61, 105, 133 |
| AcuI | CTGAAG | 2 cut(s) | 99, 172 |
| AfaI | GTAC | 3 cut(s) | 44, 340, 612 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 520 |
| AgsI | TTSAA | 6 cut(s) | 59, 139, 391, 556, 595, 764 |
| AluBI | AGCT | 4 cut(s) | 404, 528, 688, 770 |
| AluI | AGCT | 4 cut(s) | 404, 528, 688, 770 |
| Alw21I | GWGCWC | 1 cut(s) | 530 |
| Alw26I | GTCTC | 1 cut(s) | 290 |
| AlwI | GGATC | 1 cut(s) | 319 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| AoxI | GGCC | 1 cut(s) | 236 |
| ApeKI | GCWGC | 4 cut(s) | 252, 331, 685, 710 |
| ApoI | RAATTY | 3 cut(s) | 61, 105, 133 |
| AspS9I | GGNCC | 2 cut(s) | 487, 754 |
| AsuC2I | CCSGG | 1 cut(s) | 606 |
| AvaII | GGWCC | 2 cut(s) | 487, 754 |
| BalI | TGGCCA | 1 cut(s) | 238 |
| BanI | GGYRCC | 1 cut(s) | 583 |
| BanII | GRGCYC | 1 cut(s) | 530 |
| Bbv12I | GWGCWC | 1 cut(s) | 530 |
| BbvI | GCAGC | 4 cut(s) | 264, 318, 697, 722 |
| BceAI | ACGGC | 2 cut(s) | 219, 277 |
| BciVI | GTATCC | 3 cut(s) | 25, 191, 300 |
| BcnI | CCSGG | 1 cut(s) | 606 |
| BcoDI | GTCTC | 1 cut(s) | 290 |
| BfaI | CTAG | 1 cut(s) | 90 |
| BfuI | GTATCC | 3 cut(s) | 25, 191, 300 |
| BisI | GCNGC | 4 cut(s) | 253, 332, 686, 711 |
| BlsI | GCNGC | 4 cut(s) | 254, 333, 687, 712 |
| Bme1390I | CCNGG | 1 cut(s) | 606 |
| Bme18I | GGWCC | 2 cut(s) | 487, 754 |
| BmgT120I | GGNCC | 2 cut(s) | 487, 754 |
| BmiI | GGNNCC | 2 cut(s) | 489, 585 |
| BmrFI | CCNGG | 1 cut(s) | 606 |
| BmrI | ACTGGG | 1 cut(s) | 632 |
| BmuI | ACTGGG | 1 cut(s) | 632 |
| BpuMI | CCSGG | 1 cut(s) | 606 |
| Bsa29I | ATCGAT | 1 cut(s) | 211 |
| BsaAI | YACGTR | 1 cut(s) | 338 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 520 |
| Bse1I | ACTGG | 1 cut(s) | 627 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseCI | ATCGAT | 1 cut(s) | 211 |
| BseGI | GGATG | 1 cut(s) | 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BseNI | ACTGG | 1 cut(s) | 627 |
| BseXI | GCAGC | 4 cut(s) | 264, 318, 697, 722 |
| BshFI | GGCC | 1 cut(s) | 238 |
| BshNI | GGYRCC | 1 cut(s) | 583 |
| BshVI | ATCGAT | 1 cut(s) | 211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 530 |
| BsiSI | CCGG | 2 cut(s) | 434, 605 |
| BslFI | GGGAC | 1 cut(s) | 180 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BsmAI | GTCTC | 1 cut(s) | 290 |
| BsmBI | CGTCTC | 1 cut(s) | 290 |
| BsmFI | GGGAC | 1 cut(s) | 180 |
| BsnI | GGCC | 1 cut(s) | 238 |
| Bsp1286I | GDGCHC | 1 cut(s) | 530 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp143I | GATC | 4 cut(s) | 212, 324, 356, 406 |
| BspACI | CCGC | 1 cut(s) | 757 |
| BspANI | GGCC | 1 cut(s) | 238 |
| BspDI | ATCGAT | 1 cut(s) | 211 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 2 cut(s) | 489, 585 |
| BspPI | GGATC | 1 cut(s) | 319 |
| BspT107I | GGYRCC | 1 cut(s) | 583 |
| BsrI | ACTGG | 1 cut(s) | 627 |
| BssMI | GATC | 4 cut(s) | 212, 324, 356, 406 |
| BssNAI | GTATAC | 1 cut(s) | 730 |
| Bst1107I | GTATAC | 1 cut(s) | 730 |
| BstBAI | YACGTR | 1 cut(s) | 338 |
| BstDEI | CTNAG | 3 cut(s) | 99, 218, 376 |
| BstF5I | GGATG | 1 cut(s) | 475 |
| BstKTI | GATC | 4 cut(s) | 215, 327, 359, 409 |
| BstMAI | GTCTC | 1 cut(s) | 290 |
| BstMBI | GATC | 4 cut(s) | 212, 324, 356, 406 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 261 |
| BstSCI | CCNGG | 1 cut(s) | 604 |
| BstSNI | TACGTA | 1 cut(s) | 338 |
| BstV1I | GCAGC | 4 cut(s) | 264, 318, 697, 722 |
| BstZ17I | GTATAC | 1 cut(s) | 730 |
| Bsu15I | ATCGAT | 1 cut(s) | 211 |
| BsuI | GTATCC | 3 cut(s) | 25, 191, 300 |
| BsuRI | GGCC | 1 cut(s) | 238 |
| BsuTUI | ATCGAT | 1 cut(s) | 211 |
| BtsCI | GGATG | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 2 cut(s) | 487, 754 |
| ClaI | ATCGAT | 1 cut(s) | 211 |
| Csp6I | GTAC | 3 cut(s) | 43, 339, 611 |
| CviAII | CATG | 3 cut(s) | 277, 519, 661 |
| CviQI | GTAC | 3 cut(s) | 43, 339, 611 |
| DdeI | CTNAG | 3 cut(s) | 99, 218, 376 |
| DpnI | GATC | 4 cut(s) | 214, 326, 358, 408 |
| DpnII | GATC | 4 cut(s) | 212, 324, 356, 406 |
| DraI | TTTAAA | 1 cut(s) | 39 |
| EaeI | YGGCCR | 1 cut(s) | 236 |
| Ecl136II | GAGCTC | 1 cut(s) | 528 |
| Eco105I | TACGTA | 1 cut(s) | 338 |
| Eco24I | GRGCYC | 1 cut(s) | 530 |
| Eco47I | GGWCC | 2 cut(s) | 487, 754 |
| Eco53kI | GAGCTC | 1 cut(s) | 528 |
| Eco57I | CTGAAG | 2 cut(s) | 99, 172 |
| EcoICRI | GAGCTC | 1 cut(s) | 528 |
| EcoRI | GAATTC | 1 cut(s) | 105 |
| EcoT38I | GRGCYC | 1 cut(s) | 530 |
| Esp3I | CGTCTC | 1 cut(s) | 290 |
| FaeI | CATG | 3 cut(s) | 280, 522, 664 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 729, 761 |
| FaqI | GGGAC | 1 cut(s) | 180 |
| FatI | CATG | 3 cut(s) | 276, 518, 660 |
| FauNDI | CATATG | 1 cut(s) | 461 |
| FblI | GTMKAC | 1 cut(s) | 729 |
| Fnu4HI | GCNGC | 4 cut(s) | 253, 332, 686, 711 |
| FokI | GGATG | 1 cut(s) | 482 |
| FriOI | GRGCYC | 1 cut(s) | 530 |
| Fsp4HI | GCNGC | 4 cut(s) | 253, 332, 686, 711 |
| FspBI | CTAG | 1 cut(s) | 90 |
| GluI | GCNGC | 4 cut(s) | 253, 332, 686, 711 |
| HaeIII | GGCC | 1 cut(s) | 238 |
| HapII | CCGG | 2 cut(s) | 434, 605 |
| Hin1II | CATG | 3 cut(s) | 280, 522, 664 |
| HinfI | GANTC | 2 cut(s) | 382, 718 |
| HpaII | CCGG | 2 cut(s) | 434, 605 |
| Hpy166II | GTNNAC | 1 cut(s) | 730 |
| Hpy188I | TCNGA | 3 cut(s) | 361, 699, 723 |
| Hpy188III | TCNNGA | 2 cut(s) | 67, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 730 |
| HpyAV | CCTTC | 1 cut(s) | 658 |
| HpyCH4IV | ACGT | 2 cut(s) | 337, 669 |
| HpyCH4V | TGCA | 3 cut(s) | 122, 227, 781 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 261 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 218, 376 |
| HpySE526I | ACGT | 2 cut(s) | 337, 669 |
| Hsp92II | CATG | 3 cut(s) | 280, 522, 664 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Kzo9I | GATC | 4 cut(s) | 212, 324, 356, 406 |
| LpnPI | CCDG | 4 cut(s) | 341, 447, 608, 618 |
| Lsp1109I | GCAGC | 4 cut(s) | 264, 318, 697, 722 |
| MaeI | CTAG | 1 cut(s) | 90 |
| MaeII | ACGT | 2 cut(s) | 337, 669 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 4 cut(s) | 214, 326, 358, 408 |
| MboI | GATC | 4 cut(s) | 212, 324, 356, 406 |
| MboII | GAAGA | 2 cut(s) | 92, 752 |
| MhlI | GDGCHC | 1 cut(s) | 530 |
| MlsI | TGGCCA | 1 cut(s) | 238 |
| MluCI | AATT | 6 cut(s) | 47, 61, 105, 133, 590, 630 |
| MluNI | TGGCCA | 1 cut(s) | 238 |
| MlyI | GAGTC | 1 cut(s) | 712 |
| MmeI | TCCRAC | 2 cut(s) | 284, 722 |
| MnlI | CCTC | 4 cut(s) | 388, 430, 460, 745 |
| Mox20I | TGGCCA | 1 cut(s) | 238 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MscI | TGGCCA | 1 cut(s) | 238 |
| MseI | TTAA | 3 cut(s) | 38, 153, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 174 |
| Msp20I | TGGCCA | 1 cut(s) | 238 |
| MspI | CCGG | 2 cut(s) | 434, 605 |
| MspR9I | CCNGG | 1 cut(s) | 606 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 261 |
| NciI | CCSGG | 1 cut(s) | 606 |
| NdeI | CATATG | 1 cut(s) | 461 |
| NdeII | GATC | 4 cut(s) | 212, 324, 356, 406 |
| NlaIII | CATG | 3 cut(s) | 280, 522, 664 |
| NlaIV | GGNNCC | 2 cut(s) | 489, 585 |
| PfeI | GAWTC | 1 cut(s) | 382 |
| PflFI | GACNNNGTC | 1 cut(s) | 752 |
| PkrI | GCNGC | 4 cut(s) | 254, 333, 687, 712 |
| PleI | GAGTC | 1 cut(s) | 712 |
| PpsI | GAGTC | 1 cut(s) | 712 |
| Ppu21I | YACGTR | 1 cut(s) | 338 |
| PsiI | TTATAA | 1 cut(s) | 674 |
| Psp124BI | GAGCTC | 1 cut(s) | 530 |
| PspN4I | GGNNCC | 2 cut(s) | 489, 585 |
| PspPI | GGNCC | 2 cut(s) | 487, 754 |
| PsyI | GACNNNGTC | 1 cut(s) | 752 |
| RsaI | GTAC | 3 cut(s) | 44, 340, 612 |
| RsaNI | GTAC | 3 cut(s) | 43, 339, 611 |
| RseI | CAYNNNNRTG | 1 cut(s) | 174 |
| SacI | GAGCTC | 1 cut(s) | 530 |
| SaqAI | TTAA | 3 cut(s) | 38, 153, 546 |
| SatI | GCNGC | 4 cut(s) | 253, 332, 686, 711 |
| Sau3AI | GATC | 4 cut(s) | 212, 324, 356, 406 |
| Sau96I | GGNCC | 2 cut(s) | 487, 754 |
| SchI | GAGTC | 1 cut(s) | 712 |
| ScrFI | CCNGG | 1 cut(s) | 606 |
| SduI | GDGCHC | 1 cut(s) | 530 |
| SetI | ASST | 9 cut(s) | 340, 406, 530, 585, 616, 672, 690, 756, 772 |
| SinI | GGWCC | 2 cut(s) | 487, 754 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 174 |
| SnaBI | TACGTA | 1 cut(s) | 338 |
| Sse9I | AATT | 6 cut(s) | 47, 61, 105, 133, 590, 630 |
| SsiI | CCGC | 1 cut(s) | 757 |
| SspMI | CTAG | 1 cut(s) | 90 |
| SstI | GAGCTC | 1 cut(s) | 530 |
| StyD4I | CCNGG | 1 cut(s) | 604 |
| TaiI | ACGT | 2 cut(s) | 340, 672 |
| TaqI | TCGA | 2 cut(s) | 149, 211 |
| TasI | AATT | 6 cut(s) | 47, 61, 105, 133, 590, 630 |
| TfiI | GAWTC | 1 cut(s) | 382 |
| Tru1I | TTAA | 3 cut(s) | 38, 153, 546 |
| Tru9I | TTAA | 3 cut(s) | 38, 153, 546 |
| TseI | GCWGC | 4 cut(s) | 252, 331, 685, 710 |
| TspDTI | ATGAA | 4 cut(s) | 293, 486, 677, 681 |
| Tth111I | GACNNNGTC | 1 cut(s) | 752 |
| VpaK11BI | GGWCC | 2 cut(s) | 487, 754 |
| XapI | RAATTY | 3 cut(s) | 61, 105, 133 |
| XmiI | GTMKAC | 1 cut(s) | 729 |
| XspI | CTAG | 1 cut(s) | 90 |