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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 702 |
| Acc65I | GGTACC | 2 cut(s) | 316, 675 |
| AccB1I | GGYRCC | 3 cut(s) | 316, 478, 675 |
| AccI | GTMKAC | 2 cut(s) | 15, 429 |
| AccII | CGCG | 1 cut(s) | 296 |
| AciI | CCGC | 4 cut(s) | 86, 294, 1025, 1059 |
| AclWI | GGATC | 5 cut(s) | 224, 616, 869, 899, 912 |
| AcsI | RAATTY | 1 cut(s) | 1018 |
| AcuI | CTGAAG | 1 cut(s) | 591 |
| AdeI | CACNNNGTG | 1 cut(s) | 263 |
| AfaI | GTAC | 7 cut(s) | 5, 66, 318, 668, 677, 889, 1064 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 884 |
| AgsI | TTSAA | 5 cut(s) | 191, 344, 458, 502, 913 |
| AjnI | CCWGG | 2 cut(s) | 148, 814 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 945, 977 |
| AluBI | AGCT | 2 cut(s) | 160, 465 |
| AluI | AGCT | 2 cut(s) | 160, 465 |
| Alw21I | GWGCWC | 1 cut(s) | 256 |
| Alw26I | GTCTC | 3 cut(s) | 38, 649, 948 |
| AlwI | GGATC | 5 cut(s) | 224, 616, 869, 899, 912 |
| AoxI | GGCC | 4 cut(s) | 380, 777, 817, 994 |
| ApaI | GGGCCC | 1 cut(s) | 781 |
| ApeKI | GCWGC | 2 cut(s) | 165, 470 |
| ApoI | RAATTY | 1 cut(s) | 1018 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 586, 618 |
| Asp718I | GGTACC | 2 cut(s) | 316, 675 |
| AspLEI | GCGC | 1 cut(s) | 298 |
| AspS9I | GGNCC | 4 cut(s) | 388, 777, 778, 994 |
| AsuHPI | GGTGA | 5 cut(s) | 138, 275, 396, 533, 1216 |
| AvaII | GGWCC | 1 cut(s) | 388 |
| AxyI | CCTNAGG | 1 cut(s) | 384 |
| BaeGI | GKGCMC | 1 cut(s) | 781 |
| BamHI | GGATCC | 1 cut(s) | 904 |
| BanI | GGYRCC | 3 cut(s) | 316, 478, 675 |
| BanII | GRGCYC | 1 cut(s) | 781 |
| BbsI | GAAGAC | 1 cut(s) | 1214 |
| Bbv12I | GWGCWC | 1 cut(s) | 256 |
| BbvI | GCAGC | 2 cut(s) | 152, 482 |
| BccI | CCATC | 4 cut(s) | 260, 293, 533, 557 |
| BciT130I | CCWGG | 2 cut(s) | 150, 816 |
| BclI | TGATCA | 1 cut(s) | 850 |
| BcoDI | GTCTC | 3 cut(s) | 38, 649, 948 |
| BfaI | CTAG | 2 cut(s) | 48, 260 |
| BisI | GCNGC | 3 cut(s) | 86, 166, 471 |
| BlsI | GCNGC | 3 cut(s) | 87, 167, 472 |
| Bme1390I | CCNGG | 2 cut(s) | 150, 816 |
| Bme18I | GGWCC | 1 cut(s) | 388 |
| BmgT120I | GGNCC | 4 cut(s) | 388, 777, 778, 994 |
| BmiI | GGNNCC | 7 cut(s) | 84, 318, 480, 567, 677, 779, 906 |
| BmrFI | CCNGG | 2 cut(s) | 150, 816 |
| BmsI | GCATC | 2 cut(s) | 495, 1062 |
| BpiI | GAAGAC | 1 cut(s) | 1214 |
| BpmI | CTGGAG | 1 cut(s) | 951 |
| Bpu10I | CCTNAGC | 1 cut(s) | 30 |
| BsaAI | YACGTR | 2 cut(s) | 7, 112 |
| BsaJI | CCNNGG | 1 cut(s) | 883 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1046, 1076 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 884 |
| Bse1I | ACTGG | 2 cut(s) | 688, 934 |
| Bse21I | CCTNAGG | 1 cut(s) | 384 |
| Bse3DI | GCAATG | 2 cut(s) | 480, 657 |
| BseBI | CCWGG | 2 cut(s) | 150, 816 |
| BseDI | CCNNGG | 1 cut(s) | 883 |
| BseGI | GGATG | 4 cut(s) | 40, 442, 864, 945 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 884 |
| BseMI | GCAATG | 2 cut(s) | 480, 657 |
| BseMII | CTCAG | 1 cut(s) | 462 |
| BseNI | ACTGG | 2 cut(s) | 688, 934 |
| BseRI | GAGGAG | 4 cut(s) | 110, 113, 1026, 1150 |
| BseSI | GKGCMC | 1 cut(s) | 781 |
| BseXI | GCAGC | 2 cut(s) | 152, 482 |
| Bsh1236I | CGCG | 1 cut(s) | 296 |
| BshFI | GGCC | 4 cut(s) | 382, 779, 819, 996 |
| BshNI | GGYRCC | 3 cut(s) | 316, 478, 675 |
| BsiHKAI | GWGCWC | 1 cut(s) | 256 |
| BsiSI | CCGG | 1 cut(s) | 997 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 884 |
| BsmAI | GTCTC | 3 cut(s) | 38, 649, 948 |
| BsmI | GAATGC | 1 cut(s) | 1029 |
| BsnI | GGCC | 4 cut(s) | 382, 779, 819, 996 |
| Bsp120I | GGGCCC | 1 cut(s) | 777 |
| Bsp1286I | GDGCHC | 2 cut(s) | 256, 781 |
| Bsp143I | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| BspACI | CCGC | 4 cut(s) | 86, 294, 1025, 1059 |
| BspANI | GGCC | 4 cut(s) | 382, 779, 819, 996 |
| BspCNI | CTCAG | 1 cut(s) | 461 |
| BspFNI | CGCG | 1 cut(s) | 296 |
| BspLI | GGNNCC | 7 cut(s) | 84, 318, 480, 567, 677, 779, 906 |
| BspPI | GGATC | 5 cut(s) | 224, 616, 869, 899, 912 |
| BspT107I | GGYRCC | 3 cut(s) | 316, 478, 675 |
| BsrDI | GCAATG | 2 cut(s) | 480, 657 |
| BsrI | ACTGG | 2 cut(s) | 688, 934 |
| BssECI | CCNNGG | 1 cut(s) | 883 |
| BssMI | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| Bst2UI | CCWGG | 2 cut(s) | 150, 816 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 349, 772 |
| Bst6I | CTCTTC | 2 cut(s) | 407, 951 |
| BstBAI | YACGTR | 2 cut(s) | 7, 112 |
| BstC8I | GCNNGC | 3 cut(s) | 357, 631, 1027 |
| BstDEI | CTNAG | 3 cut(s) | 30, 384, 448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 882 |
| BstF5I | GGATG | 4 cut(s) | 40, 442, 864, 945 |
| BstFNI | CGCG | 1 cut(s) | 296 |
| BstHHI | GCGC | 1 cut(s) | 298 |
| BstKTI | GATC | 5 cut(s) | 232, 611, 853, 877, 907 |
| BstMAI | GTCTC | 3 cut(s) | 38, 649, 948 |
| BstMBI | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 476, 1081 |
| BstNI | CCWGG | 2 cut(s) | 150, 816 |
| BstNSI | RCATGY | 1 cut(s) | 1084 |
| BstSCI | CCNGG | 2 cut(s) | 148, 814 |
| BstSLI | GKGCMC | 1 cut(s) | 781 |
| BstSNI | TACGTA | 1 cut(s) | 7 |
| BstUI | CGCG | 1 cut(s) | 296 |
| BstV1I | GCAGC | 2 cut(s) | 152, 482 |
| BstV2I | GAAGAC | 1 cut(s) | 1214 |
| BstX2I | RGATCY | 1 cut(s) | 904 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 904 |
| Bsu36I | CCTNAGG | 1 cut(s) | 384 |
| BsuRI | GGCC | 4 cut(s) | 382, 779, 819, 996 |
| BtgZI | GCGATG | 1 cut(s) | 240 |
| BtsCI | GGATG | 4 cut(s) | 40, 442, 864, 945 |
| BtsIMutI | CAGTG | 2 cut(s) | 210, 927 |
| Cac8I | GCNNGC | 3 cut(s) | 357, 631, 1027 |
| CfoI | GCGC | 1 cut(s) | 298 |
| Cfr13I | GGNCC | 4 cut(s) | 388, 777, 778, 994 |
| Csp6I | GTAC | 7 cut(s) | 4, 65, 317, 667, 676, 888, 1063 |
| CviAII | CATG | 9 cut(s) | 89, 248, 378, 433, 562, 634, 715, 829, 1081 |
| CviQI | GTAC | 7 cut(s) | 4, 65, 317, 667, 676, 888, 1063 |
| DdeI | CTNAG | 3 cut(s) | 30, 384, 448 |
| DpnI | GATC | 5 cut(s) | 231, 610, 852, 876, 906 |
| DpnII | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| DraIII | CACNNNGTG | 1 cut(s) | 263 |
| Eam1104I | CTCTTC | 2 cut(s) | 407, 951 |
| EarI | CTCTTC | 2 cut(s) | 407, 951 |
| Eco105I | TACGTA | 1 cut(s) | 7 |
| Eco24I | GRGCYC | 1 cut(s) | 781 |
| Eco32I | GATATC | 1 cut(s) | 1090 |
| Eco47I | GGWCC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 1 cut(s) | 591 |
| Eco81I | CCTNAGG | 1 cut(s) | 384 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 882 |
| EcoO109I | RGGNCCY | 2 cut(s) | 388, 777 |
| EcoRII | CCWGG | 2 cut(s) | 148, 814 |
| EcoRV | GATATC | 1 cut(s) | 1090 |
| EcoT38I | GRGCYC | 1 cut(s) | 781 |
| FaeI | CATG | 9 cut(s) | 92, 251, 381, 436, 565, 637, 718, 832, 1084 |
| FatI | CATG | 9 cut(s) | 88, 247, 377, 432, 561, 633, 714, 828, 1080 |
| FauI | CCCGC | 2 cut(s) | 1018, 1052 |
| FbaI | TGATCA | 1 cut(s) | 850 |
| FblI | GTMKAC | 2 cut(s) | 15, 429 |
| Fnu4HI | GCNGC | 3 cut(s) | 86, 166, 471 |
| FokI | GGATG | 4 cut(s) | 47, 449, 871, 952 |
| FriOI | GRGCYC | 1 cut(s) | 781 |
| Fsp4HI | GCNGC | 3 cut(s) | 86, 166, 471 |
| FspBI | CTAG | 2 cut(s) | 48, 260 |
| GlaI | GCGC | 1 cut(s) | 297 |
| GluI | GCNGC | 3 cut(s) | 86, 166, 471 |
| GsuI | CTGGAG | 1 cut(s) | 951 |
| HaeIII | GGCC | 4 cut(s) | 382, 779, 819, 996 |
| HapII | CCGG | 1 cut(s) | 997 |
| HhaI | GCGC | 1 cut(s) | 298 |
| Hin1II | CATG | 9 cut(s) | 92, 251, 381, 436, 565, 637, 718, 832, 1084 |
| Hin6I | GCGC | 1 cut(s) | 296 |
| HinP1I | GCGC | 1 cut(s) | 296 |
| HincII | GTYRAC | 6 cut(s) | 16, 130, 430, 693, 730, 864 |
| HindII | GTYRAC | 6 cut(s) | 16, 130, 430, 693, 730, 864 |
| HinfI | GANTC | 4 cut(s) | 17, 446, 494, 524 |
| HpaII | CCGG | 1 cut(s) | 997 |
| HphI | GGTGA | 5 cut(s) | 138, 275, 396, 533, 1216 |
| Hpy166II | GTNNAC | 8 cut(s) | 16, 130, 430, 667, 693, 712, 730, 864 |
| Hpy188I | TCNGA | 2 cut(s) | 451, 613 |
| Hpy188III | TCNNGA | 5 cut(s) | 588, 648, 738, 878, 950 |
| Hpy8I | GTNNAC | 8 cut(s) | 16, 130, 430, 667, 693, 712, 730, 864 |
| HpyAV | CCTTC | 2 cut(s) | 744, 985 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 349, 772 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 111, 1211 |
| HpyCH4V | TGCA | 8 cut(s) | 23, 168, 530, 629, 657, 722, 893, 959 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 476, 1081 |
| HpyF3I | CTNAG | 3 cut(s) | 30, 384, 448 |
| HpySE526I | ACGT | 3 cut(s) | 6, 111, 1211 |
| Hsp92II | CATG | 9 cut(s) | 92, 251, 381, 436, 565, 637, 718, 832, 1084 |
| HspAI | GCGC | 1 cut(s) | 296 |
| KpnI | GGTACC | 2 cut(s) | 320, 679 |
| Ksp22I | TGATCA | 1 cut(s) | 850 |
| Kzo9I | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| LmnI | GCTCC | 2 cut(s) | 82, 259 |
| Lsp1109I | GCAGC | 2 cut(s) | 152, 482 |
| LweI | GCATC | 2 cut(s) | 495, 1062 |
| MaeI | CTAG | 2 cut(s) | 48, 260 |
| MaeII | ACGT | 3 cut(s) | 6, 111, 1211 |
| MaeIII | GTNAC | 3 cut(s) | 144, 402, 1142 |
| MalI | GATC | 5 cut(s) | 231, 610, 852, 876, 906 |
| MboI | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| MboII | GAAGA | 9 cut(s) | 65, 116, 424, 514, 938, 997, 1000, 1175, 1219 |
| MfeI | CAATTG | 1 cut(s) | 867 |
| MflI | RGATCY | 1 cut(s) | 904 |
| MhlI | GDGCHC | 2 cut(s) | 256, 781 |
| MluCI | AATT | 7 cut(s) | 243, 339, 458, 652, 741, 867, 1018 |
| MlyI | GAGTC | 3 cut(s) | 11, 440, 533 |
| MseI | TTAA | 4 cut(s) | 78, 330, 351, 972 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 662 |
| MspI | CCGG | 1 cut(s) | 997 |
| MspR9I | CCNGG | 2 cut(s) | 150, 816 |
| MunI | CAATTG | 1 cut(s) | 867 |
| Mva1269I | GAATGC | 1 cut(s) | 1029 |
| MvaI | CCWGG | 2 cut(s) | 150, 816 |
| MvnI | CGCG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 476, 1081 |
| NdeII | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| NlaIII | CATG | 9 cut(s) | 92, 251, 381, 436, 565, 637, 718, 832, 1084 |
| NlaIV | GGNNCC | 7 cut(s) | 84, 318, 480, 567, 677, 779, 906 |
| NmuCI | GTSAC | 2 cut(s) | 144, 402 |
| NspI | RCATGY | 1 cut(s) | 1084 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 12 |
| PctI | GAATGC | 1 cut(s) | 1029 |
| PfeI | GAWTC | 1 cut(s) | 494 |
| PkrI | GCNGC | 3 cut(s) | 87, 167, 472 |
| PleI | GAGTC | 3 cut(s) | 11, 440, 532 |
| PpsI | GAGTC | 3 cut(s) | 11, 440, 532 |
| Ppu21I | YACGTR | 2 cut(s) | 7, 112 |
| PpuMI | RGGWCCY | 1 cut(s) | 388 |
| PsiI | TTATAA | 1 cut(s) | 702 |
| Psp5II | RGGWCCY | 1 cut(s) | 388 |
| Psp6I | CCWGG | 2 cut(s) | 148, 814 |
| PspGI | CCWGG | 2 cut(s) | 148, 814 |
| PspN4I | GGNNCC | 7 cut(s) | 84, 318, 480, 567, 677, 779, 906 |
| PspOMI | GGGCCC | 1 cut(s) | 777 |
| PspPI | GGNCC | 4 cut(s) | 388, 777, 778, 994 |
| PspPPI | RGGWCCY | 1 cut(s) | 388 |
| PsuI | RGATCY | 1 cut(s) | 904 |
| RsaI | GTAC | 7 cut(s) | 5, 66, 318, 668, 677, 889, 1064 |
| RsaNI | GTAC | 7 cut(s) | 4, 65, 317, 667, 676, 888, 1063 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 662 |
| SalI | GTCGAC | 2 cut(s) | 14, 428 |
| SaqAI | TTAA | 4 cut(s) | 78, 330, 351, 972 |
| SatI | GCNGC | 3 cut(s) | 86, 166, 471 |
| Sau3AI | GATC | 5 cut(s) | 229, 608, 850, 874, 904 |
| Sau96I | GGNCC | 4 cut(s) | 388, 777, 778, 994 |
| SchI | GAGTC | 3 cut(s) | 11, 440, 533 |
| ScrFI | CCNGG | 2 cut(s) | 150, 816 |
| SduI | GDGCHC | 2 cut(s) | 256, 781 |
| SfaNI | GCATC | 2 cut(s) | 495, 1062 |
| SinI | GGWCC | 1 cut(s) | 388 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 662 |
| SnaBI | TACGTA | 1 cut(s) | 7 |
| Sse9I | AATT | 7 cut(s) | 243, 339, 458, 652, 741, 867, 1018 |
| SsiI | CCGC | 4 cut(s) | 86, 294, 1025, 1059 |
| SspI | AATATT | 1 cut(s) | 196 |
| SspMI | CTAG | 2 cut(s) | 48, 260 |
| StyD4I | CCNGG | 2 cut(s) | 148, 814 |
| TaaI | ACNGT | 3 cut(s) | 214, 349, 772 |
| TaiI | ACGT | 3 cut(s) | 9, 114, 1214 |
| TaqI | TCGA | 3 cut(s) | 15, 429, 589 |
| TaqII | GACCGA | 1 cut(s) | 897 |
| TasI | AATT | 7 cut(s) | 243, 339, 458, 652, 741, 867, 1018 |
| TauI | GCSGC | 1 cut(s) | 88 |
| TfiI | GAWTC | 1 cut(s) | 494 |
| Tru1I | TTAA | 4 cut(s) | 78, 330, 351, 972 |
| Tru9I | TTAA | 4 cut(s) | 78, 330, 351, 972 |
| TscAI | CASTG | 2 cut(s) | 217, 934 |
| TseFI | GTSAC | 2 cut(s) | 144, 402 |
| TseI | GCWGC | 2 cut(s) | 165, 470 |
| Tsp45I | GTSAC | 2 cut(s) | 144, 402 |
| TspDTI | ATGAA | 5 cut(s) | 236, 351, 453, 547, 817 |
| TspGWI | ACGGA | 1 cut(s) | 390 |
| TspRI | CASTG | 2 cut(s) | 217, 934 |
| VpaK11BI | GGWCC | 1 cut(s) | 388 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 882 |
| XapI | RAATTY | 1 cut(s) | 1018 |
| XceI | RCATGY | 1 cut(s) | 1084 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 245 |
| XmiI | GTMKAC | 2 cut(s) | 15, 429 |
| XspI | CTAG | 2 cut(s) | 48, 260 |